Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0846

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0845 and Ga0059261_0846 overlap by 4 nucleotidesGa0059261_0846 and Ga0059261_0847 are separated by 121 nucleotides Ga0059261_0845: Ga0059261_0845 - Predicted aminoglycoside phosphotransferase, at 885,199 to 886,260 _0845 Ga0059261_0846: Ga0059261_0846 - Zn-dependent alcohol dehydrogenases, class III, at 886,257 to 887,342 _0846 Ga0059261_0847: Ga0059261_0847 - Acyl-CoA dehydrogenases, at 887,464 to 888,747 _0847 Position (kb) 886 887 888Strain fitness (log2 ratio) -2 -1 0 1 2at 885.360 kb on - strand, within Ga0059261_0845at 885.509 kb on + strand, within Ga0059261_0845at 885.509 kb on + strand, within Ga0059261_0845at 885.510 kb on - strand, within Ga0059261_0845at 885.510 kb on - strand, within Ga0059261_0845at 885.510 kb on - strand, within Ga0059261_0845at 885.597 kb on + strand, within Ga0059261_0845at 885.597 kb on + strand, within Ga0059261_0845at 885.597 kb on + strand, within Ga0059261_0845at 885.597 kb on + strand, within Ga0059261_0845at 885.597 kb on + strand, within Ga0059261_0845at 885.597 kb on + strand, within Ga0059261_0845at 885.597 kb on + strand, within Ga0059261_0845at 885.597 kb on + strand, within Ga0059261_0845at 885.597 kb on + strand, within Ga0059261_0845at 885.598 kb on - strand, within Ga0059261_0845at 885.598 kb on - strand, within Ga0059261_0845at 885.598 kb on - strand, within Ga0059261_0845at 885.598 kb on - strand, within Ga0059261_0845at 885.598 kb on - strand, within Ga0059261_0845at 885.598 kb on - strand, within Ga0059261_0845at 885.604 kb on + strandat 885.606 kb on + strand, within Ga0059261_0845at 885.606 kb on + strand, within Ga0059261_0845at 885.607 kb on - strand, within Ga0059261_0845at 885.717 kb on - strand, within Ga0059261_0845at 885.752 kb on + strand, within Ga0059261_0845at 885.770 kb on + strand, within Ga0059261_0845at 885.794 kb on + strand, within Ga0059261_0845at 885.794 kb on + strand, within Ga0059261_0845at 885.794 kb on + strand, within Ga0059261_0845at 885.794 kb on + strandat 885.795 kb on - strand, within Ga0059261_0845at 885.795 kb on - strand, within Ga0059261_0845at 885.795 kb on - strand, within Ga0059261_0845at 885.795 kb on - strand, within Ga0059261_0845at 885.839 kb on + strand, within Ga0059261_0845at 885.839 kb on + strand, within Ga0059261_0845at 885.840 kb on - strand, within Ga0059261_0845at 885.840 kb on - strand, within Ga0059261_0845at 885.840 kb on - strand, within Ga0059261_0845at 885.890 kb on + strand, within Ga0059261_0845at 885.890 kb on + strand, within Ga0059261_0845at 885.890 kb on + strand, within Ga0059261_0845at 885.890 kb on + strand, within Ga0059261_0845at 885.891 kb on - strand, within Ga0059261_0845at 885.891 kb on - strand, within Ga0059261_0845at 885.891 kb on - strand, within Ga0059261_0845at 885.891 kb on - strand, within Ga0059261_0845at 885.920 kb on + strand, within Ga0059261_0845at 885.920 kb on + strand, within Ga0059261_0845at 885.920 kb on + strand, within Ga0059261_0845at 885.920 kb on + strand, within Ga0059261_0845at 885.920 kb on + strand, within Ga0059261_0845at 885.920 kb on + strand, within Ga0059261_0845at 885.920 kb on + strand, within Ga0059261_0845at 885.920 kb on + strand, within Ga0059261_0845at 885.920 kb on + strand, within Ga0059261_0845at 885.921 kb on - strand, within Ga0059261_0845at 885.921 kb on - strand, within Ga0059261_0845at 885.921 kb on - strand, within Ga0059261_0845at 885.921 kb on - strand, within Ga0059261_0845at 885.921 kb on - strand, within Ga0059261_0845at 885.921 kb on - strand, within Ga0059261_0845at 885.921 kb on - strand, within Ga0059261_0845at 885.921 kb on - strand, within Ga0059261_0845at 885.921 kb on - strand, within Ga0059261_0845at 885.921 kb on - strand, within Ga0059261_0845at 885.962 kb on + strand, within Ga0059261_0845at 885.962 kb on + strand, within Ga0059261_0845at 886.014 kb on - strand, within Ga0059261_0845at 886.076 kb on + strand, within Ga0059261_0845at 886.076 kb on + strand, within Ga0059261_0845at 886.076 kb on + strand, within Ga0059261_0845at 886.076 kb on + strand, within Ga0059261_0845at 886.076 kb on + strand, within Ga0059261_0845at 886.076 kb on + strand, within Ga0059261_0845at 886.076 kb on + strand, within Ga0059261_0845at 886.076 kb on + strandat 886.076 kb on + strand, within Ga0059261_0845at 886.076 kb on + strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.077 kb on - strand, within Ga0059261_0845at 886.103 kb on + strand, within Ga0059261_0845at 886.103 kb on + strand, within Ga0059261_0845at 886.103 kb on + strand, within Ga0059261_0845at 886.104 kb on - strand, within Ga0059261_0845at 886.104 kb on - strand, within Ga0059261_0845at 886.104 kb on - strand, within Ga0059261_0845at 886.139 kb on + strand, within Ga0059261_0845at 886.139 kb on + strand, within Ga0059261_0845at 886.139 kb on + strand, within Ga0059261_0845at 886.139 kb on + strand, within Ga0059261_0845at 886.139 kb on + strand, within Ga0059261_0845at 886.139 kb on + strand, within Ga0059261_0845at 886.139 kb on + strand, within Ga0059261_0845at 886.140 kb on - strand, within Ga0059261_0845at 886.323 kb on - strandat 886.381 kb on + strand, within Ga0059261_0846at 886.381 kb on + strand, within Ga0059261_0846at 886.381 kb on + strand, within Ga0059261_0846at 886.381 kb on + strand, within Ga0059261_0846at 886.382 kb on - strand, within Ga0059261_0846at 886.382 kb on - strand, within Ga0059261_0846at 886.382 kb on - strand, within Ga0059261_0846at 886.382 kb on - strand, within Ga0059261_0846at 886.382 kb on - strand, within Ga0059261_0846at 886.382 kb on - strand, within Ga0059261_0846at 886.562 kb on + strand, within Ga0059261_0846at 886.591 kb on + strand, within Ga0059261_0846at 886.591 kb on + strand, within Ga0059261_0846at 886.591 kb on + strand, within Ga0059261_0846at 886.591 kb on + strand, within Ga0059261_0846at 886.592 kb on - strand, within Ga0059261_0846at 886.592 kb on - strand, within Ga0059261_0846at 887.197 kb on + strand, within Ga0059261_0846at 887.197 kb on + strand, within Ga0059261_0846at 887.198 kb on - strand, within Ga0059261_0846at 887.198 kb on - strand, within Ga0059261_0846at 887.291 kb on + strandat 887.291 kb on + strandat 887.291 kb on + strandat 887.291 kb on + strandat 887.292 kb on - strandat 887.292 kb on - strandat 887.292 kb on - strandat 887.292 kb on - strandat 887.344 kb on + strandat 887.344 kb on + strandat 887.344 kb on + strandat 887.344 kb on + strandat 887.344 kb on + strandat 887.345 kb on - strandat 887.345 kb on - strandat 887.520 kb on - strandat 887.520 kb on - strandat 887.520 kb on - strandat 887.997 kb on + strand, within Ga0059261_0847at 887.997 kb on + strand, within Ga0059261_0847at 887.998 kb on - strandat 888.234 kb on + strand, within Ga0059261_0847at 888.234 kb on + strand, within Ga0059261_0847at 888.234 kb on + strand, within Ga0059261_0847at 888.234 kb on + strand, within Ga0059261_0847at 888.234 kb on + strand, within Ga0059261_0847at 888.235 kb on - strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.239 kb on + strand, within Ga0059261_0847at 888.240 kb on - strand, within Ga0059261_0847at 888.240 kb on - strand, within Ga0059261_0847at 888.240 kb on - strand, within Ga0059261_0847at 888.240 kb on - strand, within Ga0059261_0847at 888.240 kb on - strand, within Ga0059261_0847at 888.240 kb on - strand, within Ga0059261_0847

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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885,360 - Ga0059261_0845 0.15 +0.6
885,509 + Ga0059261_0845 0.29 -0.6
885,509 + Ga0059261_0845 0.29 +1.3
885,510 - Ga0059261_0845 0.29 -0.5
885,510 - Ga0059261_0845 0.29 -0.0
885,510 - Ga0059261_0845 0.29 -0.7
885,597 + Ga0059261_0845 0.37 -0.0
885,597 + Ga0059261_0845 0.37 -0.0
885,597 + Ga0059261_0845 0.37 -0.8
885,597 + Ga0059261_0845 0.37 -0.1
885,597 + Ga0059261_0845 0.37 +0.8
885,597 + Ga0059261_0845 0.37 +0.1
885,597 + Ga0059261_0845 0.37 +0.1
885,597 + Ga0059261_0845 0.37 -1.4
885,597 + Ga0059261_0845 0.37 -0.4
885,598 - Ga0059261_0845 0.38 +0.0
885,598 - Ga0059261_0845 0.38 +0.4
885,598 - Ga0059261_0845 0.38 -0.2
885,598 - Ga0059261_0845 0.38 -0.0
885,598 - Ga0059261_0845 0.38 +0.3
885,598 - Ga0059261_0845 0.38 -0.3
885,604 + -0.6
885,606 + Ga0059261_0845 0.38 -0.4
885,606 + Ga0059261_0845 0.38 +0.1
885,607 - Ga0059261_0845 0.38 -1.0
885,717 - Ga0059261_0845 0.49 -0.0
885,752 + Ga0059261_0845 0.52 +0.7
885,770 + Ga0059261_0845 0.54 -0.3
885,794 + Ga0059261_0845 0.56 +0.4
885,794 + Ga0059261_0845 0.56 -0.6
885,794 + Ga0059261_0845 0.56 +0.1
885,794 + -0.8
885,795 - Ga0059261_0845 0.56 -0.2
885,795 - Ga0059261_0845 0.56 +0.1
885,795 - Ga0059261_0845 0.56 +0.0
885,795 - Ga0059261_0845 0.56 +0.2
885,839 + Ga0059261_0845 0.60 -0.9
885,839 + Ga0059261_0845 0.60 +0.3
885,840 - Ga0059261_0845 0.60 -0.2
885,840 - Ga0059261_0845 0.60 +1.1
885,840 - Ga0059261_0845 0.60 -0.1
885,890 + Ga0059261_0845 0.65 +0.5
885,890 + Ga0059261_0845 0.65 -1.3
885,890 + Ga0059261_0845 0.65 -0.0
885,890 + Ga0059261_0845 0.65 +0.2
885,891 - Ga0059261_0845 0.65 +0.4
885,891 - Ga0059261_0845 0.65 +0.9
885,891 - Ga0059261_0845 0.65 -0.4
885,891 - Ga0059261_0845 0.65 +0.6
885,920 + Ga0059261_0845 0.68 -1.9
885,920 + Ga0059261_0845 0.68 +0.4
885,920 + Ga0059261_0845 0.68 -1.5
885,920 + Ga0059261_0845 0.68 -0.6
885,920 + Ga0059261_0845 0.68 -0.6
885,920 + Ga0059261_0845 0.68 -0.8
885,920 + Ga0059261_0845 0.68 -0.7
885,920 + Ga0059261_0845 0.68 -0.8
885,920 + Ga0059261_0845 0.68 -0.4
885,921 - Ga0059261_0845 0.68 +0.4
885,921 - Ga0059261_0845 0.68 -0.8
885,921 - Ga0059261_0845 0.68 -0.7
885,921 - Ga0059261_0845 0.68 +0.1
885,921 - Ga0059261_0845 0.68 -0.3
885,921 - Ga0059261_0845 0.68 +0.6
885,921 - Ga0059261_0845 0.68 +0.3
885,921 - Ga0059261_0845 0.68 +0.4
885,921 - Ga0059261_0845 0.68 +1.1
885,921 - Ga0059261_0845 0.68 +0.4
885,962 + Ga0059261_0845 0.72 +1.6
885,962 + Ga0059261_0845 0.72 +0.4
886,014 - Ga0059261_0845 0.77 +0.9
886,076 + Ga0059261_0845 0.83 -0.4
886,076 + Ga0059261_0845 0.83 -1.4
886,076 + Ga0059261_0845 0.83 +0.3
886,076 + Ga0059261_0845 0.83 +0.4
886,076 + Ga0059261_0845 0.83 -0.2
886,076 + Ga0059261_0845 0.83 +0.6
886,076 + Ga0059261_0845 0.83 -0.4
886,076 + -0.4
886,076 + Ga0059261_0845 0.83 +0.3
886,076 + Ga0059261_0845 0.83 +0.1
886,077 - Ga0059261_0845 0.83 -0.2
886,077 - Ga0059261_0845 0.83 +0.0
886,077 - Ga0059261_0845 0.83 +0.3
886,077 - Ga0059261_0845 0.83 -0.1
886,077 - Ga0059261_0845 0.83 -0.1
886,077 - Ga0059261_0845 0.83 +0.3
886,077 - Ga0059261_0845 0.83 -0.5
886,077 - Ga0059261_0845 0.83 -0.3
886,077 - Ga0059261_0845 0.83 +0.1
886,077 - Ga0059261_0845 0.83 +0.7
886,077 - Ga0059261_0845 0.83 +0.1
886,077 - Ga0059261_0845 0.83 +0.6
886,077 - Ga0059261_0845 0.83 -0.8
886,077 - Ga0059261_0845 0.83 -1.2
886,077 - Ga0059261_0845 0.83 -1.0
886,077 - Ga0059261_0845 0.83 -0.2
886,103 + Ga0059261_0845 0.85 +0.5
886,103 + Ga0059261_0845 0.85 +1.3
886,103 + Ga0059261_0845 0.85 +0.1
886,104 - Ga0059261_0845 0.85 +0.2
886,104 - Ga0059261_0845 0.85 -0.2
886,104 - Ga0059261_0845 0.85 -0.1
886,139 + Ga0059261_0845 0.89 -0.5
886,139 + Ga0059261_0845 0.89 -0.2
886,139 + Ga0059261_0845 0.89 -0.5
886,139 + Ga0059261_0845 0.89 +0.2
886,139 + Ga0059261_0845 0.89 +0.1
886,139 + Ga0059261_0845 0.89 +1.0
886,139 + Ga0059261_0845 0.89 -0.3
886,140 - Ga0059261_0845 0.89 +0.0
886,323 - +0.8
886,381 + Ga0059261_0846 0.11 -0.7
886,381 + Ga0059261_0846 0.11 -0.4
886,381 + Ga0059261_0846 0.11 +1.4
886,381 + Ga0059261_0846 0.11 -1.1
886,382 - Ga0059261_0846 0.12 -0.1
886,382 - Ga0059261_0846 0.12 +0.4
886,382 - Ga0059261_0846 0.12 +0.5
886,382 - Ga0059261_0846 0.12 +0.6
886,382 - Ga0059261_0846 0.12 -0.3
886,382 - Ga0059261_0846 0.12 +1.1
886,562 + Ga0059261_0846 0.28 -1.4
886,591 + Ga0059261_0846 0.31 +0.8
886,591 + Ga0059261_0846 0.31 -0.2
886,591 + Ga0059261_0846 0.31 +0.4
886,591 + Ga0059261_0846 0.31 +1.0
886,592 - Ga0059261_0846 0.31 +0.0
886,592 - Ga0059261_0846 0.31 +0.9
887,197 + Ga0059261_0846 0.87 +0.0
887,197 + Ga0059261_0846 0.87 +1.3
887,198 - Ga0059261_0846 0.87 +0.6
887,198 - Ga0059261_0846 0.87 +0.4
887,291 + -0.1
887,291 + +0.9
887,291 + +0.3
887,291 + -0.7
887,292 - -0.9
887,292 - -0.3
887,292 - +0.5
887,292 - -0.9
887,344 + +0.2
887,344 + -0.3
887,344 + -0.7
887,344 + -0.0
887,344 + +0.6
887,345 - -0.0
887,345 - -0.0
887,520 - -0.4
887,520 - -0.1
887,520 - +0.6
887,997 + Ga0059261_0847 0.42 +0.2
887,997 + Ga0059261_0847 0.42 -0.2
887,998 - -0.0
888,234 + Ga0059261_0847 0.60 +0.3
888,234 + Ga0059261_0847 0.60 +0.3
888,234 + Ga0059261_0847 0.60 -0.5
888,234 + Ga0059261_0847 0.60 +0.3
888,234 + Ga0059261_0847 0.60 +0.1
888,235 - Ga0059261_0847 0.60 +0.2
888,239 + Ga0059261_0847 0.60 -0.5
888,239 + Ga0059261_0847 0.60 -0.2
888,239 + Ga0059261_0847 0.60 -1.2
888,239 + Ga0059261_0847 0.60 +0.3
888,239 + Ga0059261_0847 0.60 -0.8
888,239 + Ga0059261_0847 0.60 +0.1
888,239 + Ga0059261_0847 0.60 -0.1
888,240 - Ga0059261_0847 0.60 +1.9
888,240 - Ga0059261_0847 0.60 -0.6
888,240 - Ga0059261_0847 0.60 -0.7
888,240 - Ga0059261_0847 0.60 -0.5
888,240 - Ga0059261_0847 0.60 +2.0
888,240 - Ga0059261_0847 0.60 +0.7

Or see this region's nucleotide sequence