Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0684

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0681 and Ga0059261_0682 are separated by 4 nucleotidesGa0059261_0682 and Ga0059261_0683 are separated by 22 nucleotidesGa0059261_0683 and Ga0059261_0684 are separated by 93 nucleotidesGa0059261_0684 and Ga0059261_0685 are separated by 172 nucleotides Ga0059261_0681: Ga0059261_0681 - Glutathionylspermidine synthase, at 721,707 to 722,852 _0681 Ga0059261_0682: Ga0059261_0682 - hypothetical protein, at 722,857 to 723,276 _0682 Ga0059261_0683: Ga0059261_0683 - Predicted membrane protein, at 723,299 to 723,706 _0683 Ga0059261_0684: Ga0059261_0684 - Uncharacterized protein conserved in bacteria, at 723,800 to 724,174 _0684 Ga0059261_0685: Ga0059261_0685 - pyruvate kinase, at 724,347 to 725,798 _0685 Position (kb) 723 724 725Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 722.957 kb on + strand, within Ga0059261_0682at 722.957 kb on + strand, within Ga0059261_0682at 722.957 kb on + strand, within Ga0059261_0682at 722.957 kb on + strand, within Ga0059261_0682at 722.957 kb on + strand, within Ga0059261_0682at 722.957 kb on + strand, within Ga0059261_0682at 722.957 kb on + strand, within Ga0059261_0682at 722.957 kb on + strand, within Ga0059261_0682at 722.957 kb on + strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.958 kb on - strand, within Ga0059261_0682at 722.981 kb on + strand, within Ga0059261_0682at 722.981 kb on + strand, within Ga0059261_0682at 722.981 kb on + strand, within Ga0059261_0682at 722.982 kb on - strand, within Ga0059261_0682at 722.982 kb on - strand, within Ga0059261_0682at 722.999 kb on + strand, within Ga0059261_0682at 723.026 kb on + strand, within Ga0059261_0682at 723.026 kb on + strand, within Ga0059261_0682at 723.027 kb on - strand, within Ga0059261_0682at 723.027 kb on - strand, within Ga0059261_0682at 723.029 kb on + strand, within Ga0059261_0682at 723.029 kb on + strand, within Ga0059261_0682at 723.029 kb on + strand, within Ga0059261_0682at 723.029 kb on + strand, within Ga0059261_0682at 723.029 kb on + strand, within Ga0059261_0682at 723.030 kb on - strand, within Ga0059261_0682at 723.030 kb on - strand, within Ga0059261_0682at 723.030 kb on - strand, within Ga0059261_0682at 723.030 kb on - strand, within Ga0059261_0682at 723.030 kb on - strand, within Ga0059261_0682at 723.030 kb on - strandat 723.030 kb on - strand, within Ga0059261_0682at 723.030 kb on - strand, within Ga0059261_0682at 723.056 kb on + strand, within Ga0059261_0682at 723.056 kb on + strand, within Ga0059261_0682at 723.056 kb on + strand, within Ga0059261_0682at 723.057 kb on - strand, within Ga0059261_0682at 723.057 kb on - strand, within Ga0059261_0682at 723.057 kb on - strand, within Ga0059261_0682at 723.057 kb on - strand, within Ga0059261_0682at 723.059 kb on + strand, within Ga0059261_0682at 723.060 kb on - strandat 723.060 kb on - strand, within Ga0059261_0682at 723.060 kb on - strand, within Ga0059261_0682at 723.101 kb on + strand, within Ga0059261_0682at 723.101 kb on + strand, within Ga0059261_0682at 723.101 kb on + strand, within Ga0059261_0682at 723.101 kb on + strand, within Ga0059261_0682at 723.102 kb on - strand, within Ga0059261_0682at 723.104 kb on + strand, within Ga0059261_0682at 723.104 kb on + strand, within Ga0059261_0682at 723.104 kb on + strand, within Ga0059261_0682at 723.104 kb on + strand, within Ga0059261_0682at 723.104 kb on + strandat 723.105 kb on - strand, within Ga0059261_0682at 723.105 kb on - strand, within Ga0059261_0682at 723.105 kb on - strand, within Ga0059261_0682at 723.105 kb on - strand, within Ga0059261_0682at 723.105 kb on - strand, within Ga0059261_0682at 723.182 kb on + strand, within Ga0059261_0682at 723.183 kb on - strand, within Ga0059261_0682at 723.183 kb on - strand, within Ga0059261_0682at 723.183 kb on - strand, within Ga0059261_0682at 723.183 kb on - strand, within Ga0059261_0682at 723.237 kb on + strandat 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strandat 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.618 kb on + strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.619 kb on - strand, within Ga0059261_0683at 723.697 kb on - strandat 723.697 kb on - strandat 723.754 kb on + strandat 723.755 kb on - strandat 723.788 kb on + strandat 723.788 kb on + strandat 723.789 kb on - strandat 723.789 kb on - strandat 723.789 kb on - strandat 723.789 kb on - strandat 723.963 kb on + strand, within Ga0059261_0684at 723.964 kb on - strand, within Ga0059261_0684at 723.975 kb on + strand, within Ga0059261_0684at 723.975 kb on + strand, within Ga0059261_0684at 723.975 kb on + strand, within Ga0059261_0684at 723.976 kb on - strand, within Ga0059261_0684at 723.976 kb on - strand, within Ga0059261_0684at 723.976 kb on - strand, within Ga0059261_0684at 724.194 kb on + strandat 724.195 kb on - strandat 724.214 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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722,957 + Ga0059261_0682 0.24 +0.2
722,957 + Ga0059261_0682 0.24 -0.3
722,957 + Ga0059261_0682 0.24 +0.6
722,957 + Ga0059261_0682 0.24 +0.2
722,957 + Ga0059261_0682 0.24 +0.3
722,957 + Ga0059261_0682 0.24 -0.3
722,957 + Ga0059261_0682 0.24 -1.0
722,957 + Ga0059261_0682 0.24 +0.8
722,957 + Ga0059261_0682 0.24 -0.2
722,958 - Ga0059261_0682 0.24 -0.5
722,958 - Ga0059261_0682 0.24 +0.1
722,958 - Ga0059261_0682 0.24 -0.0
722,958 - Ga0059261_0682 0.24 +0.2
722,958 - Ga0059261_0682 0.24 -0.8
722,958 - Ga0059261_0682 0.24 +0.0
722,958 - Ga0059261_0682 0.24 -0.8
722,958 - Ga0059261_0682 0.24 +0.9
722,958 - Ga0059261_0682 0.24 -0.8
722,958 - Ga0059261_0682 0.24 +1.0
722,958 - Ga0059261_0682 0.24 +1.0
722,958 - Ga0059261_0682 0.24 +0.9
722,958 - Ga0059261_0682 0.24 -1.2
722,981 + Ga0059261_0682 0.30 -0.4
722,981 + Ga0059261_0682 0.30 -1.0
722,981 + Ga0059261_0682 0.30 +1.0
722,982 - Ga0059261_0682 0.30 -0.9
722,982 - Ga0059261_0682 0.30 +0.2
722,999 + Ga0059261_0682 0.34 +1.7
723,026 + Ga0059261_0682 0.40 -0.1
723,026 + Ga0059261_0682 0.40 -0.6
723,027 - Ga0059261_0682 0.40 -0.3
723,027 - Ga0059261_0682 0.40 +0.9
723,029 + Ga0059261_0682 0.41 -0.6
723,029 + Ga0059261_0682 0.41 -0.8
723,029 + Ga0059261_0682 0.41 -0.3
723,029 + Ga0059261_0682 0.41 -0.4
723,029 + Ga0059261_0682 0.41 -1.1
723,030 - Ga0059261_0682 0.41 -0.9
723,030 - Ga0059261_0682 0.41 +0.9
723,030 - Ga0059261_0682 0.41 -1.8
723,030 - Ga0059261_0682 0.41 -0.7
723,030 - Ga0059261_0682 0.41 +0.5
723,030 - +1.1
723,030 - Ga0059261_0682 0.41 -0.7
723,030 - Ga0059261_0682 0.41 +0.4
723,056 + Ga0059261_0682 0.47 +0.1
723,056 + Ga0059261_0682 0.47 -0.4
723,056 + Ga0059261_0682 0.47 +0.5
723,057 - Ga0059261_0682 0.48 +0.7
723,057 - Ga0059261_0682 0.48 -0.4
723,057 - Ga0059261_0682 0.48 +0.1
723,057 - Ga0059261_0682 0.48 +0.2
723,059 + Ga0059261_0682 0.48 -0.2
723,060 - +2.3
723,060 - Ga0059261_0682 0.48 +0.3
723,060 - Ga0059261_0682 0.48 +0.1
723,101 + Ga0059261_0682 0.58 +0.1
723,101 + Ga0059261_0682 0.58 -0.1
723,101 + Ga0059261_0682 0.58 -0.3
723,101 + Ga0059261_0682 0.58 -0.3
723,102 - Ga0059261_0682 0.58 +0.9
723,104 + Ga0059261_0682 0.59 -1.3
723,104 + Ga0059261_0682 0.59 +0.2
723,104 + Ga0059261_0682 0.59 +0.5
723,104 + Ga0059261_0682 0.59 -0.1
723,104 + +1.6
723,105 - Ga0059261_0682 0.59 -0.4
723,105 - Ga0059261_0682 0.59 +0.8
723,105 - Ga0059261_0682 0.59 -0.3
723,105 - Ga0059261_0682 0.59 +0.7
723,105 - Ga0059261_0682 0.59 +0.1
723,182 + Ga0059261_0682 0.77 -0.3
723,183 - Ga0059261_0682 0.78 +0.1
723,183 - Ga0059261_0682 0.78 -0.0
723,183 - Ga0059261_0682 0.78 -0.2
723,183 - Ga0059261_0682 0.78 -1.0
723,237 + +0.3
723,618 + Ga0059261_0683 0.78 -0.7
723,618 + Ga0059261_0683 0.78 -0.4
723,618 + Ga0059261_0683 0.78 +0.6
723,618 + -1.0
723,618 + Ga0059261_0683 0.78 -0.1
723,618 + Ga0059261_0683 0.78 -0.5
723,618 + Ga0059261_0683 0.78 +0.5
723,618 + Ga0059261_0683 0.78 +0.1
723,618 + Ga0059261_0683 0.78 -0.4
723,618 + Ga0059261_0683 0.78 -1.0
723,618 + Ga0059261_0683 0.78 -0.8
723,618 + Ga0059261_0683 0.78 +0.4
723,619 - Ga0059261_0683 0.78 +0.3
723,619 - Ga0059261_0683 0.78 -0.0
723,619 - Ga0059261_0683 0.78 -0.5
723,619 - Ga0059261_0683 0.78 +0.4
723,619 - Ga0059261_0683 0.78 +0.0
723,619 - Ga0059261_0683 0.78 +0.1
723,619 - Ga0059261_0683 0.78 -0.0
723,619 - Ga0059261_0683 0.78 +0.1
723,619 - Ga0059261_0683 0.78 -0.4
723,697 - -0.4
723,697 - +0.4
723,754 + -0.4
723,755 - -0.3
723,788 + +1.1
723,788 + +0.5
723,789 - +0.3
723,789 - -0.1
723,789 - -0.8
723,789 - +0.6
723,963 + Ga0059261_0684 0.43 +0.9
723,964 - Ga0059261_0684 0.44 +1.4
723,975 + Ga0059261_0684 0.47 -0.3
723,975 + Ga0059261_0684 0.47 -0.3
723,975 + Ga0059261_0684 0.47 +0.7
723,976 - Ga0059261_0684 0.47 -3.4
723,976 - Ga0059261_0684 0.47 -0.1
723,976 - Ga0059261_0684 0.47 -0.1
724,194 + +0.5
724,195 - +0.5
724,214 - -0.4

Or see this region's nucleotide sequence