Experiment: Cisplatin 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0534 and Ga0059261_0535 are separated by 63 nucleotides Ga0059261_0535 and Ga0059261_0536 are separated by 57 nucleotides Ga0059261_0536 and Ga0059261_0537 are separated by 50 nucleotides
Ga0059261_0534: Ga0059261_0534 - TonB dependent receptor/Secretin and TonB N terminus short domain/TonB-dependent Receptor Plug Domain, at 536,348 to 539,530
_0534
Ga0059261_0535: Ga0059261_0535 - PAP2 superfamily, at 539,594 to 540,409
_0535
Ga0059261_0536: Ga0059261_0536 - transcriptional regulator, TetR family, at 540,467 to 541,063
_0536
Ga0059261_0537: Ga0059261_0537 - Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit, at 541,114 to 542,295
_0537
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 539.480 kb on + strand at 539.480 kb on + strand at 539.481 kb on - strand at 539.481 kb on - strand at 539.481 kb on - strand at 539.481 kb on - strand at 539.481 kb on - strand at 539.498 kb on + strand at 539.504 kb on + strand at 539.709 kb on + strand, within Ga0059261_0535 at 539.714 kb on + strand, within Ga0059261_0535 at 539.714 kb on + strand, within Ga0059261_0535 at 539.714 kb on + strand, within Ga0059261_0535 at 539.715 kb on - strand, within Ga0059261_0535 at 539.715 kb on - strand, within Ga0059261_0535 at 539.715 kb on - strand, within Ga0059261_0535 at 539.739 kb on - strand, within Ga0059261_0535 at 539.873 kb on + strand, within Ga0059261_0535 at 540.014 kb on + strand, within Ga0059261_0535 at 540.023 kb on + strand, within Ga0059261_0535 at 540.023 kb on + strand, within Ga0059261_0535 at 540.024 kb on - strand, within Ga0059261_0535 at 540.096 kb on - strand, within Ga0059261_0535 at 540.116 kb on + strand, within Ga0059261_0535 at 540.116 kb on + strand, within Ga0059261_0535 at 540.116 kb on + strand, within Ga0059261_0535 at 540.117 kb on - strand, within Ga0059261_0535 at 540.117 kb on - strand, within Ga0059261_0535 at 540.117 kb on - strand, within Ga0059261_0535 at 540.117 kb on - strand, within Ga0059261_0535 at 540.117 kb on - strand, within Ga0059261_0535 at 540.194 kb on + strand, within Ga0059261_0535 at 540.194 kb on + strand, within Ga0059261_0535 at 540.194 kb on + strand, within Ga0059261_0535 at 540.194 kb on + strand, within Ga0059261_0535 at 540.194 kb on + strand, within Ga0059261_0535 at 540.195 kb on - strand, within Ga0059261_0535 at 540.222 kb on - strand, within Ga0059261_0535 at 540.333 kb on - strand at 540.333 kb on - strand at 540.666 kb on + strand, within Ga0059261_0536 at 540.666 kb on + strand, within Ga0059261_0536 at 540.666 kb on + strand, within Ga0059261_0536 at 540.667 kb on - strand, within Ga0059261_0536 at 540.667 kb on - strand, within Ga0059261_0536 at 540.667 kb on - strand, within Ga0059261_0536 at 540.667 kb on - strand, within Ga0059261_0536 at 540.667 kb on - strand, within Ga0059261_0536 at 540.783 kb on + strand, within Ga0059261_0536 at 540.783 kb on + strand, within Ga0059261_0536 at 540.783 kb on + strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.784 kb on - strand, within Ga0059261_0536 at 540.824 kb on + strand, within Ga0059261_0536 at 540.870 kb on + strand, within Ga0059261_0536 at 540.871 kb on - strand, within Ga0059261_0536 at 540.871 kb on - strand, within Ga0059261_0536 at 540.871 kb on - strand, within Ga0059261_0536 at 540.871 kb on - strand, within Ga0059261_0536 at 541.186 kb on + strand at 541.186 kb on + strand at 541.187 kb on - strand at 541.187 kb on - strand at 541.187 kb on - strand at 541.432 kb on + strand, within Ga0059261_0537 at 541.433 kb on - strand, within Ga0059261_0537 at 541.447 kb on + strand, within Ga0059261_0537 at 541.447 kb on + strand, within Ga0059261_0537 at 541.447 kb on + strand, within Ga0059261_0537 at 541.447 kb on + strand, within Ga0059261_0537 at 541.448 kb on - strand, within Ga0059261_0537 at 541.448 kb on - strand, within Ga0059261_0537 at 541.493 kb on - strand, within Ga0059261_0537 at 541.493 kb on - strand, within Ga0059261_0537 at 541.616 kb on - strand, within Ga0059261_0537 at 541.616 kb on - strand, within Ga0059261_0537 at 541.718 kb on - strand, within Ga0059261_0537 at 541.718 kb on - strand, within Ga0059261_0537 at 541.780 kb on + strand, within Ga0059261_0537 at 541.780 kb on + strand, within Ga0059261_0537 at 541.822 kb on + strand, within Ga0059261_0537 at 541.822 kb on + strand, within Ga0059261_0537 at 541.864 kb on + strand, within Ga0059261_0537 at 541.865 kb on - strand, within Ga0059261_0537 at 541.865 kb on - strand, within Ga0059261_0537 at 541.924 kb on + strand, within Ga0059261_0537 at 541.924 kb on + strand, within Ga0059261_0537 at 541.924 kb on + strand, within Ga0059261_0537 at 541.924 kb on + strand, within Ga0059261_0537 at 541.924 kb on + strand, within Ga0059261_0537 at 541.927 kb on + strand, within Ga0059261_0537 at 541.928 kb on - strand, within Ga0059261_0537 at 541.928 kb on - strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.960 kb on + strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537 at 541.961 kb on - strand, within Ga0059261_0537
Per-strain Table
Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml remove 539,480 + -0.7 539,480 + +0.5 539,481 - -0.9 539,481 - +2.1 539,481 - -0.3 539,481 - -0.5 539,481 - +1.0 539,498 + -0.5 539,504 + -0.2 539,709 + Ga0059261_0535 0.14 -2.2 539,714 + Ga0059261_0535 0.15 -0.3 539,714 + Ga0059261_0535 0.15 +0.1 539,714 + Ga0059261_0535 0.15 +0.0 539,715 - Ga0059261_0535 0.15 -0.4 539,715 - Ga0059261_0535 0.15 -0.8 539,715 - Ga0059261_0535 0.15 +0.2 539,739 - Ga0059261_0535 0.18 -0.4 539,873 + Ga0059261_0535 0.34 +0.1 540,014 + Ga0059261_0535 0.51 -0.0 540,023 + Ga0059261_0535 0.53 -0.5 540,023 + Ga0059261_0535 0.53 -0.3 540,024 - Ga0059261_0535 0.53 -2.4 540,096 - Ga0059261_0535 0.62 +0.0 540,116 + Ga0059261_0535 0.64 +0.1 540,116 + Ga0059261_0535 0.64 -1.3 540,116 + Ga0059261_0535 0.64 -0.2 540,117 - Ga0059261_0535 0.64 -0.7 540,117 - Ga0059261_0535 0.64 +0.1 540,117 - Ga0059261_0535 0.64 -0.4 540,117 - Ga0059261_0535 0.64 -0.4 540,117 - Ga0059261_0535 0.64 -1.2 540,194 + Ga0059261_0535 0.74 -0.4 540,194 + Ga0059261_0535 0.74 -1.0 540,194 + Ga0059261_0535 0.74 -0.2 540,194 + Ga0059261_0535 0.74 -0.1 540,194 + Ga0059261_0535 0.74 -0.1 540,195 - Ga0059261_0535 0.74 -0.6 540,222 - Ga0059261_0535 0.77 -0.4 540,333 - +0.2 540,333 - +0.8 540,666 + Ga0059261_0536 0.33 +0.2 540,666 + Ga0059261_0536 0.33 -1.5 540,666 + Ga0059261_0536 0.33 +1.0 540,667 - Ga0059261_0536 0.34 +0.5 540,667 - Ga0059261_0536 0.34 -1.6 540,667 - Ga0059261_0536 0.34 +0.2 540,667 - Ga0059261_0536 0.34 -0.8 540,667 - Ga0059261_0536 0.34 -0.8 540,783 + Ga0059261_0536 0.53 +0.3 540,783 + Ga0059261_0536 0.53 -0.5 540,783 + Ga0059261_0536 0.53 +0.2 540,784 - Ga0059261_0536 0.53 -2.3 540,784 - Ga0059261_0536 0.53 +0.5 540,784 - Ga0059261_0536 0.53 -1.2 540,784 - Ga0059261_0536 0.53 +0.3 540,784 - Ga0059261_0536 0.53 -0.2 540,784 - Ga0059261_0536 0.53 +0.1 540,784 - Ga0059261_0536 0.53 -0.3 540,824 + Ga0059261_0536 0.60 -0.3 540,870 + Ga0059261_0536 0.68 +0.3 540,871 - Ga0059261_0536 0.68 +0.3 540,871 - Ga0059261_0536 0.68 +0.0 540,871 - Ga0059261_0536 0.68 -0.1 540,871 - Ga0059261_0536 0.68 -0.0 541,186 + -0.1 541,186 + -1.6 541,187 - -0.9 541,187 - -0.6 541,187 - -1.0 541,432 + Ga0059261_0537 0.27 +0.0 541,433 - Ga0059261_0537 0.27 -0.5 541,447 + Ga0059261_0537 0.28 -0.8 541,447 + Ga0059261_0537 0.28 +0.1 541,447 + Ga0059261_0537 0.28 +0.1 541,447 + Ga0059261_0537 0.28 -0.1 541,448 - Ga0059261_0537 0.28 +0.3 541,448 - Ga0059261_0537 0.28 -0.1 541,493 - Ga0059261_0537 0.32 -0.4 541,493 - Ga0059261_0537 0.32 +0.1 541,616 - Ga0059261_0537 0.42 +0.2 541,616 - Ga0059261_0537 0.42 -0.1 541,718 - Ga0059261_0537 0.51 -0.2 541,718 - Ga0059261_0537 0.51 +1.2 541,780 + Ga0059261_0537 0.56 +0.1 541,780 + Ga0059261_0537 0.56 -0.9 541,822 + Ga0059261_0537 0.60 -0.0 541,822 + Ga0059261_0537 0.60 -0.9 541,864 + Ga0059261_0537 0.63 -0.3 541,865 - Ga0059261_0537 0.64 +0.4 541,865 - Ga0059261_0537 0.64 -0.8 541,924 + Ga0059261_0537 0.69 -0.6 541,924 + Ga0059261_0537 0.69 -0.5 541,924 + Ga0059261_0537 0.69 +0.2 541,924 + Ga0059261_0537 0.69 -0.1 541,924 + Ga0059261_0537 0.69 -0.4 541,927 + Ga0059261_0537 0.69 -0.1 541,928 - Ga0059261_0537 0.69 +0.6 541,928 - Ga0059261_0537 0.69 +0.4 541,960 + Ga0059261_0537 0.72 +0.4 541,960 + Ga0059261_0537 0.72 +0.3 541,960 + Ga0059261_0537 0.72 +0.7 541,960 + Ga0059261_0537 0.72 +0.5 541,960 + Ga0059261_0537 0.72 -1.0 541,960 + Ga0059261_0537 0.72 +0.2 541,960 + Ga0059261_0537 0.72 +0.0 541,960 + Ga0059261_0537 0.72 -0.1 541,961 - Ga0059261_0537 0.72 -0.3 541,961 - Ga0059261_0537 0.72 +0.2 541,961 - Ga0059261_0537 0.72 +0.2 541,961 - Ga0059261_0537 0.72 -0.6 541,961 - Ga0059261_0537 0.72 -1.5 541,961 - Ga0059261_0537 0.72 +0.2 541,961 - Ga0059261_0537 0.72 +0.1 541,961 - Ga0059261_0537 0.72 -0.0 541,961 - Ga0059261_0537 0.72 +1.2
Or see this region's nucleotide sequence