Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0128

Experiment: Cisplatin 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0126 and Ga0059261_0127 are separated by 8 nucleotidesGa0059261_0127 and Ga0059261_0128 overlap by 4 nucleotidesGa0059261_0128 and Ga0059261_0129 are separated by 22 nucleotidesGa0059261_0129 and Ga0059261_0130 are separated by 67 nucleotides Ga0059261_0126: Ga0059261_0126 - hydrolase, TatD family, at 120,448 to 121,227 _0126 Ga0059261_0127: Ga0059261_0127 - Metal-dependent hydrolases of the beta-lactamase superfamily I, at 121,236 to 122,000 _0127 Ga0059261_0128: Ga0059261_0128 - clan AA aspartic protease, TIGR02281 family, at 121,997 to 122,617 _0128 Ga0059261_0129: Ga0059261_0129 - MazG family protein, at 122,640 to 123,431 _0129 Ga0059261_0130: Ga0059261_0130 - Predicted lactoylglutathione lyase, at 123,499 to 123,888 _0130 Position (kb) 121 122 123Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 121.225 kb on + strandat 121.225 kb on + strandat 121.225 kb on + strandat 121.225 kb on + strandat 121.225 kb on + strandat 121.225 kb on + strandat 121.579 kb on - strand, within Ga0059261_0127at 121.602 kb on + strand, within Ga0059261_0127at 121.603 kb on - strand, within Ga0059261_0127at 121.764 kb on - strand, within Ga0059261_0127at 121.911 kb on - strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.919 kb on + strand, within Ga0059261_0127at 121.920 kb on - strandat 121.920 kb on - strand, within Ga0059261_0127at 121.920 kb on - strand, within Ga0059261_0127at 121.920 kb on - strand, within Ga0059261_0127at 121.929 kb on + strandat 121.929 kb on + strandat 121.929 kb on + strandat 121.929 kb on + strandat 121.930 kb on - strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.931 kb on + strandat 121.932 kb on - strandat 121.932 kb on - strandat 121.932 kb on - strandat 121.932 kb on - strandat 121.932 kb on - strandat 122.138 kb on + strand, within Ga0059261_0128at 122.138 kb on + strand, within Ga0059261_0128at 122.138 kb on + strand, within Ga0059261_0128at 122.138 kb on + strand, within Ga0059261_0128at 122.138 kb on + strand, within Ga0059261_0128at 122.138 kb on + strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strandat 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.139 kb on - strand, within Ga0059261_0128at 122.378 kb on + strand, within Ga0059261_0128at 122.378 kb on + strand, within Ga0059261_0128at 122.379 kb on - strand, within Ga0059261_0128at 122.379 kb on - strand, within Ga0059261_0128at 122.379 kb on - strand, within Ga0059261_0128at 122.379 kb on - strand, within Ga0059261_0128at 122.565 kb on + strandat 122.616 kb on - strandat 122.616 kb on - strandat 122.620 kb on + strandat 122.621 kb on - strandat 122.623 kb on - strandat 122.623 kb on - strandat 122.759 kb on + strand, within Ga0059261_0129at 122.759 kb on + strand, within Ga0059261_0129at 122.759 kb on + strand, within Ga0059261_0129at 122.760 kb on - strand, within Ga0059261_0129at 122.791 kb on - strand, within Ga0059261_0129at 122.808 kb on + strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.809 kb on - strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.981 kb on + strand, within Ga0059261_0129at 122.982 kb on - strand, within Ga0059261_0129at 122.982 kb on - strandat 123.429 kb on + strandat 123.429 kb on + strandat 123.430 kb on - strandat 123.430 kb on - strandat 123.467 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.508 kb on + strandat 123.509 kb on - strandat 123.509 kb on - strandat 123.509 kb on - strandat 123.553 kb on + strand, within Ga0059261_0130at 123.553 kb on + strand, within Ga0059261_0130at 123.553 kb on + strand, within Ga0059261_0130at 123.554 kb on - strand, within Ga0059261_0130at 123.554 kb on - strand, within Ga0059261_0130at 123.554 kb on - strand, within Ga0059261_0130at 123.554 kb on - strand, within Ga0059261_0130at 123.616 kb on + strand, within Ga0059261_0130at 123.617 kb on - strand, within Ga0059261_0130

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Per-strain Table

Position Strand Gene LocusTag Fraction Cisplatin 0.01 mg/ml
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121,225 + +0.9
121,225 + -0.4
121,225 + +0.9
121,225 + -0.1
121,225 + +0.7
121,225 + -0.0
121,579 - Ga0059261_0127 0.45 +0.0
121,602 + Ga0059261_0127 0.48 -0.8
121,603 - Ga0059261_0127 0.48 +2.5
121,764 - Ga0059261_0127 0.69 +0.3
121,911 - Ga0059261_0127 0.88 +0.8
121,919 + Ga0059261_0127 0.89 -0.3
121,919 + Ga0059261_0127 0.89 -1.4
121,919 + Ga0059261_0127 0.89 -0.2
121,919 + Ga0059261_0127 0.89 +2.0
121,919 + Ga0059261_0127 0.89 -0.2
121,919 + Ga0059261_0127 0.89 -1.9
121,919 + Ga0059261_0127 0.89 +0.0
121,920 - -0.5
121,920 - Ga0059261_0127 0.89 -0.1
121,920 - Ga0059261_0127 0.89 +0.2
121,920 - Ga0059261_0127 0.89 +0.8
121,929 + +0.5
121,929 + -0.1
121,929 + +0.7
121,929 + +0.1
121,930 - +0.7
121,931 + +0.5
121,931 + +1.6
121,931 + +0.5
121,931 + +0.3
121,931 + +0.2
121,931 + +0.7
121,931 + +0.5
121,931 + -0.9
121,932 - +0.5
121,932 - -0.6
121,932 - +0.5
121,932 - +0.3
121,932 - +0.5
122,138 + Ga0059261_0128 0.23 -0.2
122,138 + Ga0059261_0128 0.23 +0.3
122,138 + Ga0059261_0128 0.23 +0.5
122,138 + Ga0059261_0128 0.23 +0.9
122,138 + Ga0059261_0128 0.23 -0.1
122,138 + Ga0059261_0128 0.23 -0.9
122,139 - Ga0059261_0128 0.23 +0.7
122,139 - Ga0059261_0128 0.23 +2.0
122,139 - -0.1
122,139 - Ga0059261_0128 0.23 +0.2
122,139 - Ga0059261_0128 0.23 +0.4
122,139 - Ga0059261_0128 0.23 -0.1
122,139 - Ga0059261_0128 0.23 +1.0
122,139 - Ga0059261_0128 0.23 +0.6
122,139 - Ga0059261_0128 0.23 -0.4
122,139 - Ga0059261_0128 0.23 +0.6
122,378 + Ga0059261_0128 0.61 -0.2
122,378 + Ga0059261_0128 0.61 +0.6
122,379 - Ga0059261_0128 0.62 -0.5
122,379 - Ga0059261_0128 0.62 +0.4
122,379 - Ga0059261_0128 0.62 -1.3
122,379 - Ga0059261_0128 0.62 -0.7
122,565 + +1.0
122,616 - -1.0
122,616 - -0.9
122,620 + -3.4
122,621 - -0.9
122,623 - -0.5
122,623 - -0.9
122,759 + Ga0059261_0129 0.15 +0.4
122,759 + Ga0059261_0129 0.15 -0.1
122,759 + Ga0059261_0129 0.15 -0.8
122,760 - Ga0059261_0129 0.15 -0.4
122,791 - Ga0059261_0129 0.19 +1.0
122,808 + Ga0059261_0129 0.21 -0.9
122,809 - Ga0059261_0129 0.21 -0.5
122,809 - Ga0059261_0129 0.21 +0.1
122,809 - Ga0059261_0129 0.21 +0.1
122,809 - Ga0059261_0129 0.21 -0.7
122,809 - Ga0059261_0129 0.21 +0.3
122,809 - Ga0059261_0129 0.21 -0.0
122,809 - Ga0059261_0129 0.21 -0.0
122,809 - Ga0059261_0129 0.21 -2.4
122,981 + Ga0059261_0129 0.43 -1.4
122,981 + Ga0059261_0129 0.43 -0.8
122,981 + Ga0059261_0129 0.43 +0.3
122,981 + Ga0059261_0129 0.43 +0.4
122,981 + Ga0059261_0129 0.43 +1.0
122,981 + Ga0059261_0129 0.43 +0.9
122,982 - Ga0059261_0129 0.43 -0.5
122,982 - -0.9
123,429 + +0.0
123,429 + +0.8
123,430 - +0.4
123,430 - -0.3
123,467 + -0.1
123,508 + +0.9
123,508 + -1.5
123,508 + +0.1
123,508 + +1.7
123,508 + -0.2
123,508 + +0.2
123,508 + +1.5
123,508 + +0.4
123,508 + +0.1
123,508 + -0.0
123,508 + +0.3
123,509 - -0.7
123,509 - -0.7
123,509 - -0.1
123,553 + Ga0059261_0130 0.14 -1.2
123,553 + Ga0059261_0130 0.14 -0.5
123,553 + Ga0059261_0130 0.14 +0.9
123,554 - Ga0059261_0130 0.14 +1.5
123,554 - Ga0059261_0130 0.14 -1.2
123,554 - Ga0059261_0130 0.14 +0.1
123,554 - Ga0059261_0130 0.14 -0.5
123,616 + Ga0059261_0130 0.30 -1.7
123,617 - Ga0059261_0130 0.30 +0.3

Or see this region's nucleotide sequence