Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27515 and AO353_27520 are separated by 217 nucleotides AO353_27520 and AO353_27525 are separated by 160 nucleotides AO353_27525 and AO353_27530 are separated by 133 nucleotides
AO353_27515: AO353_27515 - radical SAM protein, at 6,004,307 to 6,005,770
_27515
AO353_27520: AO353_27520 - 3-demethylubiquinone-9 3-methyltransferase, at 6,005,988 to 6,006,401
_27520
AO353_27525: AO353_27525 - AraC family transcriptional regulator, at 6,006,562 to 6,007,584
_27525
AO353_27530: AO353_27530 - acetyl-CoA acetyltransferase, at 6,007,718 to 6,008,902
_27530
Position (kb)
6006
6007
6008 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6005.581 kb on + strand, within AO353_27515 at 6005.581 kb on + strand, within AO353_27515 at 6005.581 kb on + strand, within AO353_27515 at 6005.581 kb on + strand, within AO353_27515 at 6005.581 kb on + strand, within AO353_27515 at 6005.582 kb on - strand, within AO353_27515 at 6005.582 kb on - strand, within AO353_27515 at 6005.582 kb on - strand, within AO353_27515 at 6005.582 kb on - strand, within AO353_27515 at 6005.582 kb on - strand, within AO353_27515 at 6005.582 kb on - strand, within AO353_27515 at 6005.582 kb on - strand, within AO353_27515 at 6005.582 kb on - strand, within AO353_27515 at 6005.621 kb on + strand, within AO353_27515 at 6005.621 kb on + strand at 6005.622 kb on - strand, within AO353_27515 at 6005.622 kb on - strand, within AO353_27515 at 6005.622 kb on - strand, within AO353_27515 at 6005.622 kb on - strand, within AO353_27515 at 6005.725 kb on + strand at 6005.768 kb on + strand at 6005.768 kb on + strand at 6005.768 kb on + strand at 6005.768 kb on + strand at 6005.768 kb on + strand at 6005.768 kb on + strand at 6005.768 kb on + strand at 6005.769 kb on - strand at 6005.769 kb on - strand at 6005.769 kb on - strand at 6005.769 kb on - strand at 6005.769 kb on - strand at 6005.783 kb on - strand at 6005.858 kb on - strand at 6005.881 kb on + strand at 6005.881 kb on + strand at 6005.881 kb on + strand at 6005.881 kb on + strand at 6005.882 kb on - strand at 6005.882 kb on - strand at 6005.882 kb on - strand at 6005.882 kb on - strand at 6005.882 kb on - strand at 6005.882 kb on - strand at 6005.885 kb on + strand at 6005.886 kb on - strand at 6005.953 kb on + strand at 6006.004 kb on - strand at 6006.004 kb on - strand at 6006.045 kb on + strand, within AO353_27520 at 6006.045 kb on + strand, within AO353_27520 at 6006.046 kb on - strand, within AO353_27520 at 6006.046 kb on - strand, within AO353_27520 at 6006.046 kb on - strand, within AO353_27520 at 6006.046 kb on - strand, within AO353_27520 at 6006.126 kb on - strand, within AO353_27520 at 6006.399 kb on + strand at 6006.400 kb on - strand at 6006.400 kb on - strand at 6006.400 kb on - strand at 6006.400 kb on - strand at 6006.408 kb on - strand at 6006.434 kb on + strand at 6006.434 kb on + strand at 6006.434 kb on + strand at 6006.434 kb on + strand at 6006.434 kb on + strand at 6006.435 kb on - strand at 6006.435 kb on - strand at 6006.435 kb on - strand at 6006.556 kb on + strand at 6006.556 kb on + strand at 6006.556 kb on + strand at 6006.556 kb on + strand at 6006.556 kb on + strand at 6006.556 kb on + strand at 6006.736 kb on + strand, within AO353_27525 at 6006.851 kb on + strand, within AO353_27525 at 6006.852 kb on - strand, within AO353_27525 at 6006.989 kb on + strand, within AO353_27525 at 6006.990 kb on - strand, within AO353_27525 at 6007.456 kb on - strand, within AO353_27525 at 6007.547 kb on + strand at 6007.547 kb on + strand at 6007.547 kb on + strand at 6007.547 kb on + strand at 6007.548 kb on - strand at 6007.556 kb on + strand at 6007.557 kb on - strand at 6007.652 kb on + strand at 6007.653 kb on - strand at 6007.676 kb on - strand at 6007.676 kb on - strand at 6007.676 kb on - strand at 6007.684 kb on - strand at 6007.732 kb on + strand at 6007.733 kb on - strand at 6007.916 kb on + strand, within AO353_27530 at 6008.094 kb on - strand, within AO353_27530 at 6008.094 kb on - strand, within AO353_27530 at 6008.094 kb on - strand, within AO353_27530 at 6008.150 kb on + strand, within AO353_27530 at 6008.150 kb on + strand, within AO353_27530 at 6008.151 kb on - strand, within AO353_27530 at 6008.308 kb on + strand, within AO353_27530 at 6008.308 kb on + strand, within AO353_27530 at 6008.379 kb on + strand, within AO353_27530 at 6008.379 kb on + strand, within AO353_27530 at 6008.380 kb on - strand, within AO353_27530 at 6008.380 kb on - strand, within AO353_27530 at 6008.380 kb on - strand, within AO353_27530 at 6008.380 kb on - strand, within AO353_27530
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 6,005,581 + AO353_27515 0.87 +0.8 6,005,581 + AO353_27515 0.87 +1.5 6,005,581 + AO353_27515 0.87 +0.8 6,005,581 + AO353_27515 0.87 -1.6 6,005,581 + AO353_27515 0.87 -0.8 6,005,582 - AO353_27515 0.87 -0.4 6,005,582 - AO353_27515 0.87 +1.4 6,005,582 - AO353_27515 0.87 +1.6 6,005,582 - AO353_27515 0.87 -0.8 6,005,582 - AO353_27515 0.87 -1.6 6,005,582 - AO353_27515 0.87 +1.3 6,005,582 - AO353_27515 0.87 -0.4 6,005,582 - AO353_27515 0.87 -0.2 6,005,621 + AO353_27515 0.90 -0.0 6,005,621 + +0.2 6,005,622 - AO353_27515 0.90 -1.3 6,005,622 - AO353_27515 0.90 +0.6 6,005,622 - AO353_27515 0.90 -1.6 6,005,622 - AO353_27515 0.90 +0.9 6,005,725 + +1.0 6,005,768 + +0.2 6,005,768 + -1.4 6,005,768 + +0.2 6,005,768 + -0.6 6,005,768 + +0.9 6,005,768 + +0.6 6,005,768 + +0.5 6,005,769 - -0.2 6,005,769 - +0.3 6,005,769 - -0.6 6,005,769 - -1.2 6,005,769 - +1.3 6,005,783 - -0.8 6,005,858 - +1.2 6,005,881 + -1.2 6,005,881 + -0.4 6,005,881 + -1.0 6,005,881 + +0.4 6,005,882 - -1.0 6,005,882 - +0.2 6,005,882 - +1.6 6,005,882 - -0.5 6,005,882 - -0.5 6,005,882 - -0.2 6,005,885 + +2.2 6,005,886 - +1.4 6,005,953 + -0.8 6,006,004 - -0.6 6,006,004 - +0.4 6,006,045 + AO353_27520 0.14 -0.6 6,006,045 + AO353_27520 0.14 +1.5 6,006,046 - AO353_27520 0.14 -1.7 6,006,046 - AO353_27520 0.14 +0.7 6,006,046 - AO353_27520 0.14 +0.2 6,006,046 - AO353_27520 0.14 +0.7 6,006,126 - AO353_27520 0.33 -2.1 6,006,399 + -1.6 6,006,400 - +0.2 6,006,400 - -0.6 6,006,400 - +0.4 6,006,400 - +1.2 6,006,408 - -0.0 6,006,434 + -1.0 6,006,434 + -0.4 6,006,434 + +0.4 6,006,434 + -1.6 6,006,434 + +1.6 6,006,435 - +0.4 6,006,435 - +2.5 6,006,435 - +0.8 6,006,556 + +0.2 6,006,556 + -1.2 6,006,556 + -1.0 6,006,556 + -1.6 6,006,556 + +1.2 6,006,556 + -0.6 6,006,736 + AO353_27525 0.17 +0.2 6,006,851 + AO353_27525 0.28 -2.1 6,006,852 - AO353_27525 0.28 -1.1 6,006,989 + AO353_27525 0.42 -0.7 6,006,990 - AO353_27525 0.42 -1.4 6,007,456 - AO353_27525 0.87 -0.1 6,007,547 + -1.1 6,007,547 + +0.6 6,007,547 + +0.0 6,007,547 + -1.7 6,007,548 - -0.6 6,007,556 + +0.2 6,007,557 - -1.1 6,007,652 + +0.6 6,007,653 - +1.8 6,007,676 - -2.0 6,007,676 - -0.4 6,007,676 - -0.6 6,007,684 - +0.4 6,007,732 + +0.6 6,007,733 - -0.4 6,007,916 + AO353_27530 0.17 +0.2 6,008,094 - AO353_27530 0.32 -1.0 6,008,094 - AO353_27530 0.32 +0.6 6,008,094 - AO353_27530 0.32 +0.2 6,008,150 + AO353_27530 0.36 +0.2 6,008,150 + AO353_27530 0.36 -0.1 6,008,151 - AO353_27530 0.37 +1.2 6,008,308 + AO353_27530 0.50 +2.2 6,008,308 + AO353_27530 0.50 +0.8 6,008,379 + AO353_27530 0.56 -2.1 6,008,379 + AO353_27530 0.56 +0.6 6,008,380 - AO353_27530 0.56 -0.4 6,008,380 - AO353_27530 0.56 -1.1 6,008,380 - AO353_27530 0.56 +0.9 6,008,380 - AO353_27530 0.56 -1.0
Or see this region's nucleotide sequence