Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_25525 and AO353_25530 are separated by 358 nucleotides AO353_25530 and AO353_25535 are separated by 5 nucleotides
AO353_25525: AO353_25525 - sugar ABC transporter, at 5,629,984 to 5,631,090
_25525
AO353_25530: AO353_25530 - UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, at 5,631,449 to 5,632,588
_25530
AO353_25535: AO353_25535 - UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 5,632,594 to 5,633,613
_25535
Position (kb)
5631
5632
5633 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5630.653 kb on + strand, within AO353_25525 at 5630.653 kb on + strand, within AO353_25525 at 5630.654 kb on - strand, within AO353_25525 at 5630.654 kb on - strand, within AO353_25525 at 5630.654 kb on - strand, within AO353_25525 at 5630.654 kb on - strand, within AO353_25525 at 5630.769 kb on + strand, within AO353_25525 at 5630.769 kb on + strand, within AO353_25525 at 5630.769 kb on + strand, within AO353_25525 at 5630.770 kb on - strand, within AO353_25525 at 5630.770 kb on - strand, within AO353_25525 at 5630.899 kb on - strand, within AO353_25525 at 5630.899 kb on - strand, within AO353_25525 at 5631.089 kb on - strand at 5631.089 kb on - strand at 5631.089 kb on - strand at 5631.122 kb on + strand at 5631.122 kb on + strand at 5631.123 kb on - strand at 5631.123 kb on - strand at 5631.123 kb on - strand at 5631.153 kb on - strand at 5631.159 kb on + strand at 5631.165 kb on + strand at 5631.165 kb on + strand at 5631.165 kb on + strand at 5631.165 kb on + strand at 5631.166 kb on - strand at 5631.272 kb on + strand at 5631.272 kb on + strand at 5631.273 kb on - strand at 5631.273 kb on - strand at 5631.273 kb on - strand at 5631.273 kb on - strand at 5631.283 kb on + strand at 5631.283 kb on + strand at 5631.283 kb on + strand at 5631.323 kb on - strand at 5631.323 kb on - strand at 5631.429 kb on + strand at 5631.429 kb on + strand at 5631.430 kb on - strand at 5631.430 kb on - strand at 5631.584 kb on + strand, within AO353_25530 at 5631.584 kb on + strand, within AO353_25530 at 5631.585 kb on - strand, within AO353_25530 at 5631.585 kb on - strand, within AO353_25530 at 5631.585 kb on - strand, within AO353_25530 at 5631.744 kb on + strand, within AO353_25530 at 5631.745 kb on - strand, within AO353_25530 at 5631.840 kb on - strand, within AO353_25530 at 5631.872 kb on + strand, within AO353_25530 at 5631.873 kb on - strand, within AO353_25530 at 5632.157 kb on + strand, within AO353_25530 at 5632.157 kb on + strand, within AO353_25530 at 5632.157 kb on + strand, within AO353_25530 at 5632.157 kb on + strand, within AO353_25530 at 5632.158 kb on - strand, within AO353_25530 at 5632.251 kb on - strand, within AO353_25530 at 5632.330 kb on + strand, within AO353_25530 at 5632.330 kb on + strand, within AO353_25530 at 5632.332 kb on + strand, within AO353_25530 at 5632.332 kb on + strand, within AO353_25530 at 5632.332 kb on + strand, within AO353_25530 at 5632.445 kb on + strand, within AO353_25530 at 5632.445 kb on + strand, within AO353_25530 at 5632.445 kb on + strand, within AO353_25530 at 5632.445 kb on + strand, within AO353_25530 at 5632.445 kb on + strand, within AO353_25530 at 5632.448 kb on + strand, within AO353_25530 at 5632.611 kb on + strand at 5633.535 kb on + strand at 5633.535 kb on + strand at 5633.535 kb on + strand at 5633.535 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 5,630,653 + AO353_25525 0.60 +1.2 5,630,653 + AO353_25525 0.60 +0.5 5,630,654 - AO353_25525 0.61 -0.9 5,630,654 - AO353_25525 0.61 -0.1 5,630,654 - AO353_25525 0.61 +0.3 5,630,654 - AO353_25525 0.61 -1.4 5,630,769 + AO353_25525 0.71 +1.2 5,630,769 + AO353_25525 0.71 -0.5 5,630,769 + AO353_25525 0.71 +0.5 5,630,770 - AO353_25525 0.71 -1.4 5,630,770 - AO353_25525 0.71 -1.4 5,630,899 - AO353_25525 0.83 -0.5 5,630,899 - AO353_25525 0.83 +2.1 5,631,089 - -0.7 5,631,089 - -1.7 5,631,089 - +0.1 5,631,122 + +0.3 5,631,122 + -2.0 5,631,123 - -1.9 5,631,123 - -0.7 5,631,123 - -2.5 5,631,153 - -1.6 5,631,159 + +0.6 5,631,165 + -0.1 5,631,165 + +0.8 5,631,165 + +1.9 5,631,165 + -1.5 5,631,166 - -0.5 5,631,272 + +0.6 5,631,272 + +1.4 5,631,273 - -0.7 5,631,273 - -0.9 5,631,273 - -2.0 5,631,273 - -1.9 5,631,283 + +0.3 5,631,283 + +0.1 5,631,283 + -0.1 5,631,323 - -1.6 5,631,323 - -0.5 5,631,429 + -0.5 5,631,429 + -0.7 5,631,430 - -0.3 5,631,430 - -0.7 5,631,584 + AO353_25530 0.12 -0.7 5,631,584 + AO353_25530 0.12 -0.7 5,631,585 - AO353_25530 0.12 -2.0 5,631,585 - AO353_25530 0.12 -2.8 5,631,585 - AO353_25530 0.12 -1.5 5,631,744 + AO353_25530 0.26 -1.1 5,631,745 - AO353_25530 0.26 -1.1 5,631,840 - AO353_25530 0.34 -0.7 5,631,872 + AO353_25530 0.37 -2.2 5,631,873 - AO353_25530 0.37 -1.2 5,632,157 + AO353_25530 0.62 +0.1 5,632,157 + AO353_25530 0.62 -1.1 5,632,157 + AO353_25530 0.62 -0.1 5,632,157 + AO353_25530 0.62 -0.9 5,632,158 - AO353_25530 0.62 -0.5 5,632,251 - AO353_25530 0.70 -0.3 5,632,330 + AO353_25530 0.77 -0.7 5,632,330 + AO353_25530 0.77 -0.1 5,632,332 + AO353_25530 0.77 -1.1 5,632,332 + AO353_25530 0.77 -0.5 5,632,332 + AO353_25530 0.77 -1.6 5,632,445 + AO353_25530 0.87 -0.7 5,632,445 + AO353_25530 0.87 +0.3 5,632,445 + AO353_25530 0.87 +0.3 5,632,445 + AO353_25530 0.87 -0.9 5,632,445 + AO353_25530 0.87 -0.5 5,632,448 + AO353_25530 0.88 +0.5 5,632,611 + +0.1 5,633,535 + +1.5 5,633,535 + -1.5 5,633,535 + -1.6 5,633,535 + -0.9
Or see this region's nucleotide sequence