Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25505

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25500 and AO353_25505 are separated by 529 nucleotidesAO353_25505 and AO353_25510 are separated by 155 nucleotides AO353_25500: AO353_25500 - phosphoglycerate mutase, at 5,622,622 to 5,623,164 _25500 AO353_25505: AO353_25505 - 4-amino-4-deoxy-L-arabinose transferase, at 5,623,694 to 5,625,343 _25505 AO353_25510: AO353_25510 - dolichyl-phosphate-mannose-protein mannosyltransferase, at 5,625,499 to 5,627,034 _25510 Position (kb) 5623 5624 5625 5626Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5622.767 kb on + strand, within AO353_25500at 5622.768 kb on - strand, within AO353_25500at 5622.768 kb on - strand, within AO353_25500at 5622.874 kb on + strand, within AO353_25500at 5622.874 kb on + strand, within AO353_25500at 5622.874 kb on + strand, within AO353_25500at 5622.874 kb on + strand, within AO353_25500at 5622.874 kb on + strand, within AO353_25500at 5622.874 kb on + strand, within AO353_25500at 5622.875 kb on - strand, within AO353_25500at 5622.875 kb on - strand, within AO353_25500at 5622.875 kb on - strand, within AO353_25500at 5622.875 kb on - strand, within AO353_25500at 5622.875 kb on - strand, within AO353_25500at 5622.875 kb on - strand, within AO353_25500at 5622.875 kb on - strand, within AO353_25500at 5622.875 kb on - strand, within AO353_25500at 5622.999 kb on + strand, within AO353_25500at 5623.000 kb on - strand, within AO353_25500at 5623.051 kb on + strandat 5623.051 kb on + strand, within AO353_25500at 5623.051 kb on + strand, within AO353_25500at 5623.051 kb on + strand, within AO353_25500at 5623.052 kb on - strand, within AO353_25500at 5623.143 kb on + strandat 5623.162 kb on + strandat 5623.162 kb on + strandat 5623.162 kb on + strandat 5623.163 kb on - strandat 5623.163 kb on - strandat 5623.163 kb on - strandat 5623.163 kb on - strandat 5623.166 kb on - strandat 5623.363 kb on + strandat 5623.364 kb on - strandat 5623.364 kb on - strandat 5623.364 kb on - strandat 5623.364 kb on - strandat 5623.399 kb on + strandat 5623.400 kb on - strandat 5623.466 kb on + strandat 5623.549 kb on - strandat 5623.613 kb on - strandat 5623.613 kb on - strandat 5623.615 kb on + strandat 5623.616 kb on - strandat 5623.635 kb on - strandat 5623.635 kb on - strandat 5623.726 kb on - strandat 5623.745 kb on + strandat 5623.745 kb on + strandat 5623.745 kb on + strandat 5623.745 kb on + strandat 5623.745 kb on + strandat 5623.745 kb on + strandat 5623.746 kb on - strandat 5623.746 kb on - strandat 5623.746 kb on - strandat 5623.746 kb on - strandat 5623.866 kb on - strand, within AO353_25505at 5623.945 kb on + strand, within AO353_25505at 5623.945 kb on + strand, within AO353_25505at 5623.945 kb on + strand, within AO353_25505at 5623.946 kb on - strand, within AO353_25505at 5624.048 kb on + strand, within AO353_25505at 5624.048 kb on + strand, within AO353_25505at 5624.048 kb on + strand, within AO353_25505at 5624.048 kb on + strand, within AO353_25505at 5624.048 kb on + strand, within AO353_25505at 5624.048 kb on + strand, within AO353_25505at 5624.049 kb on - strand, within AO353_25505at 5624.049 kb on - strand, within AO353_25505at 5624.273 kb on + strand, within AO353_25505at 5624.273 kb on + strand, within AO353_25505at 5624.273 kb on + strand, within AO353_25505at 5624.273 kb on + strandat 5624.273 kb on + strand, within AO353_25505at 5624.273 kb on + strand, within AO353_25505at 5624.273 kb on + strand, within AO353_25505at 5624.274 kb on - strand, within AO353_25505at 5624.274 kb on - strand, within AO353_25505at 5624.274 kb on - strand, within AO353_25505at 5624.274 kb on - strand, within AO353_25505at 5624.274 kb on - strand, within AO353_25505at 5624.375 kb on - strand, within AO353_25505at 5624.601 kb on + strand, within AO353_25505at 5624.636 kb on + strand, within AO353_25505at 5624.636 kb on + strand, within AO353_25505at 5624.636 kb on + strand, within AO353_25505at 5624.636 kb on + strand, within AO353_25505at 5624.636 kb on + strand, within AO353_25505at 5624.636 kb on + strand, within AO353_25505at 5624.636 kb on + strand, within AO353_25505at 5624.636 kb on + strand, within AO353_25505at 5624.637 kb on - strand, within AO353_25505at 5624.637 kb on - strand, within AO353_25505at 5624.637 kb on - strand, within AO353_25505at 5624.637 kb on - strand, within AO353_25505at 5624.637 kb on - strand, within AO353_25505at 5624.637 kb on - strand, within AO353_25505at 5624.745 kb on + strand, within AO353_25505at 5624.746 kb on - strand, within AO353_25505at 5624.780 kb on + strand, within AO353_25505at 5624.780 kb on + strand, within AO353_25505at 5624.780 kb on + strand, within AO353_25505at 5624.781 kb on - strand, within AO353_25505at 5624.781 kb on - strand, within AO353_25505at 5624.781 kb on - strand, within AO353_25505at 5624.781 kb on - strand, within AO353_25505at 5624.900 kb on + strand, within AO353_25505at 5624.900 kb on + strand, within AO353_25505at 5624.901 kb on - strand, within AO353_25505at 5624.901 kb on - strand, within AO353_25505at 5625.047 kb on - strand, within AO353_25505at 5625.107 kb on + strand, within AO353_25505at 5625.107 kb on + strand, within AO353_25505at 5625.107 kb on + strand, within AO353_25505at 5625.107 kb on + strand, within AO353_25505at 5625.108 kb on - strand, within AO353_25505at 5625.108 kb on - strand, within AO353_25505at 5625.108 kb on - strand, within AO353_25505at 5625.108 kb on - strand, within AO353_25505at 5625.131 kb on + strand, within AO353_25505at 5625.131 kb on + strand, within AO353_25505at 5625.131 kb on + strand, within AO353_25505at 5625.132 kb on - strand, within AO353_25505at 5625.132 kb on - strand, within AO353_25505at 5625.132 kb on - strand, within AO353_25505at 5625.132 kb on - strand, within AO353_25505at 5625.296 kb on + strandat 5625.296 kb on + strandat 5625.297 kb on - strandat 5625.297 kb on - strandat 5625.379 kb on + strandat 5625.379 kb on + strandat 5625.379 kb on + strandat 5625.380 kb on - strandat 5625.380 kb on - strandat 5625.400 kb on + strandat 5625.400 kb on + strandat 5625.401 kb on - strandat 5625.494 kb on - strandat 5625.494 kb on - strandat 5625.494 kb on - strandat 5625.557 kb on + strandat 5625.558 kb on - strandat 5625.649 kb on + strandat 5625.649 kb on + strandat 5625.650 kb on - strandat 5625.650 kb on - strandat 5625.679 kb on + strand, within AO353_25510at 5625.679 kb on + strand, within AO353_25510at 5625.679 kb on + strand, within AO353_25510at 5625.679 kb on + strand, within AO353_25510at 5625.680 kb on - strand, within AO353_25510at 5625.680 kb on - strand, within AO353_25510at 5625.682 kb on + strand, within AO353_25510at 5625.683 kb on - strand, within AO353_25510at 5625.703 kb on + strand, within AO353_25510at 5625.732 kb on + strand, within AO353_25510at 5625.733 kb on - strand, within AO353_25510at 5625.805 kb on + strand, within AO353_25510at 5625.805 kb on + strand, within AO353_25510at 5625.805 kb on + strand, within AO353_25510at 5625.806 kb on - strand, within AO353_25510at 5625.806 kb on - strand, within AO353_25510at 5625.806 kb on - strand, within AO353_25510at 5625.877 kb on + strand, within AO353_25510at 5625.877 kb on + strand, within AO353_25510at 5625.877 kb on + strand, within AO353_25510at 5625.877 kb on + strand, within AO353_25510at 5625.877 kb on + strand, within AO353_25510at 5625.877 kb on + strand, within AO353_25510at 5625.877 kb on + strand, within AO353_25510at 5625.877 kb on + strand, within AO353_25510at 5625.877 kb on + strand, within AO353_25510at 5625.878 kb on - strand, within AO353_25510at 5625.878 kb on - strand, within AO353_25510at 5625.878 kb on - strand, within AO353_25510at 5625.878 kb on - strand, within AO353_25510at 5625.878 kb on - strand, within AO353_25510at 5626.047 kb on + strand, within AO353_25510at 5626.154 kb on - strand, within AO353_25510at 5626.154 kb on - strand, within AO353_25510at 5626.179 kb on + strand, within AO353_25510at 5626.180 kb on - strand, within AO353_25510at 5626.184 kb on - strand, within AO353_25510at 5626.279 kb on + strand, within AO353_25510at 5626.279 kb on + strand, within AO353_25510at 5626.279 kb on + strand, within AO353_25510at 5626.279 kb on + strand, within AO353_25510at 5626.279 kb on + strand, within AO353_25510at 5626.279 kb on + strand, within AO353_25510at 5626.280 kb on - strand, within AO353_25510at 5626.280 kb on - strand, within AO353_25510at 5626.280 kb on - strand, within AO353_25510at 5626.280 kb on - strand, within AO353_25510at 5626.280 kb on - strand, within AO353_25510at 5626.285 kb on + strand, within AO353_25510at 5626.285 kb on + strand, within AO353_25510at 5626.286 kb on - strand, within AO353_25510at 5626.286 kb on - strand, within AO353_25510at 5626.294 kb on + strand, within AO353_25510at 5626.294 kb on + strand, within AO353_25510at 5626.294 kb on + strand, within AO353_25510at 5626.295 kb on - strand, within AO353_25510at 5626.295 kb on - strand, within AO353_25510at 5626.295 kb on - strand, within AO353_25510at 5626.307 kb on - strand, within AO353_25510at 5626.308 kb on + strand, within AO353_25510at 5626.308 kb on + strand, within AO353_25510

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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5,622,767 + AO353_25500 0.27 -0.1
5,622,768 - AO353_25500 0.27 -0.9
5,622,768 - AO353_25500 0.27 +0.9
5,622,874 + AO353_25500 0.46 -0.1
5,622,874 + AO353_25500 0.46 -0.7
5,622,874 + AO353_25500 0.46 +0.2
5,622,874 + AO353_25500 0.46 +0.1
5,622,874 + AO353_25500 0.46 +0.4
5,622,874 + AO353_25500 0.46 +0.6
5,622,875 - AO353_25500 0.47 +0.8
5,622,875 - AO353_25500 0.47 +1.1
5,622,875 - AO353_25500 0.47 -0.5
5,622,875 - AO353_25500 0.47 -1.2
5,622,875 - AO353_25500 0.47 -0.1
5,622,875 - AO353_25500 0.47 +0.6
5,622,875 - AO353_25500 0.47 -1.5
5,622,875 - AO353_25500 0.47 -0.9
5,622,999 + AO353_25500 0.69 -0.6
5,623,000 - AO353_25500 0.70 -0.4
5,623,051 + -0.5
5,623,051 + AO353_25500 0.79 +0.3
5,623,051 + AO353_25500 0.79 +0.2
5,623,051 + AO353_25500 0.79 +1.3
5,623,052 - AO353_25500 0.79 +0.7
5,623,143 + -1.0
5,623,162 + +0.7
5,623,162 + +1.1
5,623,162 + -0.5
5,623,163 - +0.5
5,623,163 - +0.1
5,623,163 - -1.1
5,623,163 - +2.3
5,623,166 - -1.1
5,623,363 + +0.1
5,623,364 - -0.8
5,623,364 - -1.3
5,623,364 - -0.8
5,623,364 - -1.1
5,623,399 + +0.1
5,623,400 - -0.5
5,623,466 + +0.4
5,623,549 - +1.1
5,623,613 - -1.8
5,623,613 - -0.3
5,623,615 + -0.8
5,623,616 - -0.3
5,623,635 - -1.7
5,623,635 - -0.9
5,623,726 - -0.5
5,623,745 + -1.3
5,623,745 + -1.2
5,623,745 + -2.0
5,623,745 + -0.5
5,623,745 + -0.7
5,623,745 + -1.5
5,623,746 - -1.1
5,623,746 - -0.9
5,623,746 - -1.3
5,623,746 - -1.3
5,623,866 - AO353_25505 0.10 -1.4
5,623,945 + AO353_25505 0.15 -0.2
5,623,945 + AO353_25505 0.15 -1.5
5,623,945 + AO353_25505 0.15 -1.5
5,623,946 - AO353_25505 0.15 -1.6
5,624,048 + AO353_25505 0.21 -0.7
5,624,048 + AO353_25505 0.21 +0.1
5,624,048 + AO353_25505 0.21 -0.3
5,624,048 + AO353_25505 0.21 +0.3
5,624,048 + AO353_25505 0.21 -1.4
5,624,048 + AO353_25505 0.21 -0.9
5,624,049 - AO353_25505 0.22 -1.6
5,624,049 - AO353_25505 0.22 -1.8
5,624,273 + AO353_25505 0.35 -1.1
5,624,273 + AO353_25505 0.35 -1.3
5,624,273 + AO353_25505 0.35 +1.1
5,624,273 + -0.5
5,624,273 + AO353_25505 0.35 +0.5
5,624,273 + AO353_25505 0.35 -2.3
5,624,273 + AO353_25505 0.35 -0.3
5,624,274 - AO353_25505 0.35 -0.1
5,624,274 - AO353_25505 0.35 -0.3
5,624,274 - AO353_25505 0.35 -2.9
5,624,274 - AO353_25505 0.35 -0.7
5,624,274 - AO353_25505 0.35 -1.3
5,624,375 - AO353_25505 0.41 -0.2
5,624,601 + AO353_25505 0.55 -2.6
5,624,636 + AO353_25505 0.57 -1.8
5,624,636 + AO353_25505 0.57 +0.1
5,624,636 + AO353_25505 0.57 +0.1
5,624,636 + AO353_25505 0.57 +0.7
5,624,636 + AO353_25505 0.57 -1.8
5,624,636 + AO353_25505 0.57 -2.0
5,624,636 + AO353_25505 0.57 -0.7
5,624,636 + AO353_25505 0.57 -0.9
5,624,637 - AO353_25505 0.57 -1.6
5,624,637 - AO353_25505 0.57 -1.8
5,624,637 - AO353_25505 0.57 -0.3
5,624,637 - AO353_25505 0.57 +0.7
5,624,637 - AO353_25505 0.57 -0.7
5,624,637 - AO353_25505 0.57 -1.1
5,624,745 + AO353_25505 0.64 -0.5
5,624,746 - AO353_25505 0.64 -1.6
5,624,780 + AO353_25505 0.66 +1.1
5,624,780 + AO353_25505 0.66 -0.7
5,624,780 + AO353_25505 0.66 -0.7
5,624,781 - AO353_25505 0.66 -1.1
5,624,781 - AO353_25505 0.66 +0.5
5,624,781 - AO353_25505 0.66 -1.5
5,624,781 - AO353_25505 0.66 -1.5
5,624,900 + AO353_25505 0.73 -0.6
5,624,900 + AO353_25505 0.73 +0.5
5,624,901 - AO353_25505 0.73 -1.2
5,624,901 - AO353_25505 0.73 -1.9
5,625,047 - AO353_25505 0.82 -1.5
5,625,107 + AO353_25505 0.86 -0.9
5,625,107 + AO353_25505 0.86 +0.9
5,625,107 + AO353_25505 0.86 -1.7
5,625,107 + AO353_25505 0.86 -1.1
5,625,108 - AO353_25505 0.86 -0.7
5,625,108 - AO353_25505 0.86 -2.3
5,625,108 - AO353_25505 0.86 +0.7
5,625,108 - AO353_25505 0.86 -1.5
5,625,131 + AO353_25505 0.87 -1.1
5,625,131 + AO353_25505 0.87 -1.5
5,625,131 + AO353_25505 0.87 +0.5
5,625,132 - AO353_25505 0.87 -0.3
5,625,132 - AO353_25505 0.87 -0.5
5,625,132 - AO353_25505 0.87 -0.7
5,625,132 - AO353_25505 0.87 -2.6
5,625,296 + -1.3
5,625,296 + -2.4
5,625,297 - -0.5
5,625,297 - -2.1
5,625,379 + +0.5
5,625,379 + -0.7
5,625,379 + +0.5
5,625,380 - -0.7
5,625,380 - +1.1
5,625,400 + -0.6
5,625,400 + +1.1
5,625,401 - +0.2
5,625,494 - -0.9
5,625,494 - +0.4
5,625,494 - -0.1
5,625,557 + -1.8
5,625,558 - +0.3
5,625,649 + -0.3
5,625,649 + +0.4
5,625,650 - +0.1
5,625,650 - +1.2
5,625,679 + AO353_25510 0.12 +0.1
5,625,679 + AO353_25510 0.12 +1.4
5,625,679 + AO353_25510 0.12 -1.8
5,625,679 + AO353_25510 0.12 +1.7
5,625,680 - AO353_25510 0.12 +0.1
5,625,680 - AO353_25510 0.12 +0.5
5,625,682 + AO353_25510 0.12 +0.1
5,625,683 - AO353_25510 0.12 +0.1
5,625,703 + AO353_25510 0.13 -1.1
5,625,732 + AO353_25510 0.15 +1.1
5,625,733 - AO353_25510 0.15 -0.4
5,625,805 + AO353_25510 0.20 -2.2
5,625,805 + AO353_25510 0.20 -0.1
5,625,805 + AO353_25510 0.20 -1.8
5,625,806 - AO353_25510 0.20 +0.3
5,625,806 - AO353_25510 0.20 +0.4
5,625,806 - AO353_25510 0.20 -1.3
5,625,877 + AO353_25510 0.25 -1.9
5,625,877 + AO353_25510 0.25 -1.4
5,625,877 + AO353_25510 0.25 -0.7
5,625,877 + AO353_25510 0.25 +0.5
5,625,877 + AO353_25510 0.25 +0.3
5,625,877 + AO353_25510 0.25 -0.1
5,625,877 + AO353_25510 0.25 -1.6
5,625,877 + AO353_25510 0.25 +0.5
5,625,877 + AO353_25510 0.25 +0.7
5,625,878 - AO353_25510 0.25 -2.1
5,625,878 - AO353_25510 0.25 +0.5
5,625,878 - AO353_25510 0.25 -0.5
5,625,878 - AO353_25510 0.25 +0.6
5,625,878 - AO353_25510 0.25 +0.4
5,626,047 + AO353_25510 0.36 +0.3
5,626,154 - AO353_25510 0.43 -0.3
5,626,154 - AO353_25510 0.43 -1.3
5,626,179 + AO353_25510 0.44 -1.3
5,626,180 - AO353_25510 0.44 +0.1
5,626,184 - AO353_25510 0.45 -1.7
5,626,279 + AO353_25510 0.51 +0.6
5,626,279 + AO353_25510 0.51 +2.3
5,626,279 + AO353_25510 0.51 -0.4
5,626,279 + AO353_25510 0.51 +0.3
5,626,279 + AO353_25510 0.51 +3.2
5,626,279 + AO353_25510 0.51 +0.5
5,626,280 - AO353_25510 0.51 +0.6
5,626,280 - AO353_25510 0.51 -1.2
5,626,280 - AO353_25510 0.51 +0.7
5,626,280 - AO353_25510 0.51 +1.5
5,626,280 - AO353_25510 0.51 +2.2
5,626,285 + AO353_25510 0.51 -1.1
5,626,285 + AO353_25510 0.51 +0.8
5,626,286 - AO353_25510 0.51 -0.3
5,626,286 - AO353_25510 0.51 +0.9
5,626,294 + AO353_25510 0.52 -0.4
5,626,294 + AO353_25510 0.52 +1.6
5,626,294 + AO353_25510 0.52 -1.3
5,626,295 - AO353_25510 0.52 +1.5
5,626,295 - AO353_25510 0.52 +1.1
5,626,295 - AO353_25510 0.52 -0.1
5,626,307 - AO353_25510 0.53 +0.7
5,626,308 + AO353_25510 0.53 +1.3
5,626,308 + AO353_25510 0.53 -0.6

Or see this region's nucleotide sequence