Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22810

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22805 and AO353_22810 are separated by 15 nucleotidesAO353_22810 and AO353_22815 are separated by 77 nucleotidesAO353_22815 and AO353_22820 are separated by 504 nucleotides AO353_22805: AO353_22805 - LacI family transcriptional regulator, at 4,997,753 to 4,998,838 _22805 AO353_22810: AO353_22810 - hypothetical protein, at 4,998,854 to 4,999,072 _22810 AO353_22815: AO353_22815 - hypothetical protein, at 4,999,150 to 4,999,506 _22815 AO353_22820: AO353_22820 - NAD-glutamate dehydrogenase, at 5,000,011 to 5,004,912 _22820 Position (kb) 4998 4999 5000Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4997.873 kb on + strand, within AO353_22805at 4997.873 kb on + strand, within AO353_22805at 4997.874 kb on - strand, within AO353_22805at 4997.874 kb on - strand, within AO353_22805at 4997.874 kb on - strand, within AO353_22805at 4998.003 kb on - strand, within AO353_22805at 4998.003 kb on - strand, within AO353_22805at 4998.003 kb on - strand, within AO353_22805at 4998.026 kb on + strand, within AO353_22805at 4998.026 kb on + strand, within AO353_22805at 4998.026 kb on + strand, within AO353_22805at 4998.026 kb on + strand, within AO353_22805at 4998.026 kb on + strand, within AO353_22805at 4998.026 kb on + strand, within AO353_22805at 4998.027 kb on - strand, within AO353_22805at 4998.027 kb on - strand, within AO353_22805at 4998.027 kb on - strand, within AO353_22805at 4998.027 kb on - strand, within AO353_22805at 4998.027 kb on - strand, within AO353_22805at 4998.027 kb on - strand, within AO353_22805at 4998.027 kb on - strand, within AO353_22805at 4998.027 kb on - strand, within AO353_22805at 4998.080 kb on - strand, within AO353_22805at 4998.189 kb on - strand, within AO353_22805at 4998.480 kb on - strand, within AO353_22805at 4998.480 kb on - strandat 4998.533 kb on - strand, within AO353_22805at 4998.533 kb on - strand, within AO353_22805at 4998.533 kb on - strand, within AO353_22805at 4998.575 kb on - strand, within AO353_22805at 4998.575 kb on - strand, within AO353_22805at 4998.575 kb on - strand, within AO353_22805at 4998.575 kb on - strand, within AO353_22805at 4998.575 kb on - strand, within AO353_22805at 4998.575 kb on - strand, within AO353_22805at 4998.579 kb on + strand, within AO353_22805at 4998.580 kb on - strand, within AO353_22805at 4998.580 kb on - strand, within AO353_22805at 4998.580 kb on - strand, within AO353_22805at 4998.586 kb on - strand, within AO353_22805at 4998.635 kb on + strand, within AO353_22805at 4998.635 kb on + strand, within AO353_22805at 4998.635 kb on + strand, within AO353_22805at 4998.635 kb on + strand, within AO353_22805at 4998.635 kb on + strand, within AO353_22805at 4998.636 kb on - strand, within AO353_22805at 4998.636 kb on - strand, within AO353_22805at 4998.752 kb on + strandat 4998.752 kb on + strandat 4998.752 kb on + strandat 4998.752 kb on + strandat 4998.753 kb on - strandat 4998.753 kb on - strandat 4998.753 kb on - strandat 4998.753 kb on - strandat 4998.753 kb on - strandat 4998.801 kb on - strandat 4998.855 kb on + strandat 4998.996 kb on - strand, within AO353_22810at 4999.072 kb on + strandat 4999.072 kb on + strandat 4999.072 kb on + strandat 4999.072 kb on + strandat 4999.073 kb on - strandat 4999.094 kb on + strandat 4999.094 kb on + strandat 4999.094 kb on + strandat 4999.094 kb on + strandat 4999.094 kb on + strandat 4999.095 kb on - strandat 4999.095 kb on - strandat 4999.095 kb on - strandat 4999.095 kb on - strandat 4999.098 kb on - strandat 4999.098 kb on - strandat 4999.107 kb on + strandat 4999.107 kb on + strandat 4999.107 kb on + strandat 4999.108 kb on - strandat 4999.108 kb on - strandat 4999.108 kb on - strandat 4999.169 kb on + strandat 4999.169 kb on + strandat 4999.169 kb on + strandat 4999.169 kb on + strandat 4999.169 kb on + strandat 4999.169 kb on + strandat 4999.169 kb on + strandat 4999.169 kb on + strandat 4999.169 kb on + strandat 4999.169 kb on + strandat 4999.170 kb on - strandat 4999.170 kb on - strandat 4999.170 kb on - strandat 4999.170 kb on - strandat 4999.170 kb on - strandat 4999.294 kb on + strand, within AO353_22815at 4999.533 kb on + strandat 4999.613 kb on + strandat 4999.614 kb on - strandat 4999.664 kb on - strandat 4999.720 kb on + strandat 4999.720 kb on + strandat 4999.720 kb on + strandat 4999.720 kb on + strandat 4999.720 kb on + strandat 4999.720 kb on + strandat 4999.720 kb on + strandat 4999.721 kb on - strandat 4999.721 kb on - strandat 4999.721 kb on - strandat 4999.721 kb on - strandat 4999.721 kb on - strandat 4999.724 kb on + strandat 4999.738 kb on + strandat 4999.738 kb on + strandat 4999.804 kb on + strandat 4999.805 kb on - strandat 4999.805 kb on - strandat 4999.985 kb on + strandat 4999.985 kb on + strandat 4999.986 kb on - strandat 4999.986 kb on - strandat 5000.003 kb on + strandat 5000.003 kb on + strandat 5000.003 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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4,997,873 + AO353_22805 0.11 +0.9
4,997,873 + AO353_22805 0.11 -1.7
4,997,874 - AO353_22805 0.11 -0.5
4,997,874 - AO353_22805 0.11 +1.8
4,997,874 - AO353_22805 0.11 -1.1
4,998,003 - AO353_22805 0.23 -2.7
4,998,003 - AO353_22805 0.23 -0.2
4,998,003 - AO353_22805 0.23 -2.5
4,998,026 + AO353_22805 0.25 -1.6
4,998,026 + AO353_22805 0.25 -0.5
4,998,026 + AO353_22805 0.25 +1.5
4,998,026 + AO353_22805 0.25 +1.7
4,998,026 + AO353_22805 0.25 +0.8
4,998,026 + AO353_22805 0.25 -1.1
4,998,027 - AO353_22805 0.25 +1.1
4,998,027 - AO353_22805 0.25 +0.0
4,998,027 - AO353_22805 0.25 +0.6
4,998,027 - AO353_22805 0.25 +0.3
4,998,027 - AO353_22805 0.25 +1.1
4,998,027 - AO353_22805 0.25 -1.8
4,998,027 - AO353_22805 0.25 -1.4
4,998,027 - AO353_22805 0.25 -0.2
4,998,080 - AO353_22805 0.30 -1.3
4,998,189 - AO353_22805 0.40 +1.5
4,998,480 - AO353_22805 0.67 -0.7
4,998,480 - +0.8
4,998,533 - AO353_22805 0.72 -1.2
4,998,533 - AO353_22805 0.72 -0.1
4,998,533 - AO353_22805 0.72 -2.4
4,998,575 - AO353_22805 0.76 -1.6
4,998,575 - AO353_22805 0.76 +1.0
4,998,575 - AO353_22805 0.76 +0.9
4,998,575 - AO353_22805 0.76 -1.5
4,998,575 - AO353_22805 0.76 -0.7
4,998,575 - AO353_22805 0.76 -1.6
4,998,579 + AO353_22805 0.76 -0.2
4,998,580 - AO353_22805 0.76 -1.5
4,998,580 - AO353_22805 0.76 -1.9
4,998,580 - AO353_22805 0.76 +0.0
4,998,586 - AO353_22805 0.77 -0.5
4,998,635 + AO353_22805 0.81 +0.7
4,998,635 + AO353_22805 0.81 -0.3
4,998,635 + AO353_22805 0.81 -0.2
4,998,635 + AO353_22805 0.81 -1.1
4,998,635 + AO353_22805 0.81 -0.6
4,998,636 - AO353_22805 0.81 +0.5
4,998,636 - AO353_22805 0.81 +0.1
4,998,752 + -0.9
4,998,752 + -0.9
4,998,752 + -0.7
4,998,752 + -0.9
4,998,753 - -2.0
4,998,753 - -2.5
4,998,753 - -0.7
4,998,753 - -1.5
4,998,753 - +1.1
4,998,801 - -1.1
4,998,855 + -0.1
4,998,996 - AO353_22810 0.65 -1.3
4,999,072 + -0.1
4,999,072 + +0.3
4,999,072 + +1.7
4,999,072 + +1.6
4,999,073 - +3.1
4,999,094 + +0.3
4,999,094 + +0.4
4,999,094 + +0.5
4,999,094 + +2.1
4,999,094 + -0.8
4,999,095 - -1.2
4,999,095 - +0.1
4,999,095 - +0.5
4,999,095 - -0.2
4,999,098 - -1.1
4,999,098 - -0.2
4,999,107 + -1.2
4,999,107 + +1.3
4,999,107 + -1.1
4,999,108 - -0.2
4,999,108 - +1.3
4,999,108 - +0.1
4,999,169 + -0.6
4,999,169 + +0.5
4,999,169 + +0.5
4,999,169 + -0.5
4,999,169 + +1.7
4,999,169 + -1.6
4,999,169 + -0.2
4,999,169 + -0.7
4,999,169 + +1.4
4,999,169 + +0.1
4,999,170 - -0.1
4,999,170 - +0.8
4,999,170 - -0.7
4,999,170 - -1.1
4,999,170 - +0.1
4,999,294 + AO353_22815 0.40 -0.5
4,999,533 + +0.9
4,999,613 + -1.1
4,999,614 - -2.0
4,999,664 - -0.5
4,999,720 + -1.3
4,999,720 + +1.4
4,999,720 + -1.0
4,999,720 + -0.7
4,999,720 + +1.8
4,999,720 + -1.7
4,999,720 + -0.4
4,999,721 - -1.1
4,999,721 - -0.7
4,999,721 - +2.7
4,999,721 - +0.8
4,999,721 - -1.2
4,999,724 + -3.2
4,999,738 + +1.0
4,999,738 + -0.1
4,999,804 + +0.7
4,999,805 - -1.2
4,999,805 - -2.1
4,999,985 + -0.6
4,999,985 + +1.1
4,999,986 - -2.1
4,999,986 - -1.9
5,000,003 + +0.1
5,000,003 + -1.8
5,000,003 + +1.5

Or see this region's nucleotide sequence