Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_22295 and AO353_22300 are separated by 120 nucleotides AO353_22300 and AO353_22305 are separated by 83 nucleotides AO353_22305 and AO353_22310 are separated by 19 nucleotides
AO353_22295: AO353_22295 - LysR family transcriptional regulator, at 4,883,600 to 4,884,493
_22295
AO353_22300: AO353_22300 - chloroperoxidase, at 4,884,614 to 4,885,267
_22300
AO353_22305: AO353_22305 - LysR family transcriptional regulator, at 4,885,351 to 4,885,764
_22305
AO353_22310: AO353_22310 - MFS transporter, at 4,885,784 to 4,887,370
_22310
Position (kb)
4885
4886 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4884.518 kb on + strand at 4884.551 kb on + strand at 4884.551 kb on + strand at 4884.551 kb on + strand at 4884.551 kb on + strand at 4884.552 kb on - strand at 4884.552 kb on - strand at 4884.552 kb on - strand at 4884.552 kb on - strand at 4884.582 kb on + strand at 4884.582 kb on + strand at 4884.582 kb on + strand at 4884.582 kb on + strand at 4884.583 kb on - strand at 4884.598 kb on + strand at 4884.598 kb on + strand at 4884.641 kb on - strand at 4884.892 kb on + strand, within AO353_22300 at 4884.893 kb on - strand, within AO353_22300 at 4884.893 kb on - strand, within AO353_22300 at 4884.912 kb on + strand, within AO353_22300 at 4884.912 kb on + strand, within AO353_22300 at 4884.913 kb on - strand, within AO353_22300 at 4884.913 kb on - strand, within AO353_22300 at 4884.913 kb on - strand, within AO353_22300 at 4884.946 kb on + strand, within AO353_22300 at 4884.947 kb on - strand, within AO353_22300 at 4884.947 kb on - strand, within AO353_22300 at 4885.025 kb on + strand, within AO353_22300 at 4885.025 kb on + strand, within AO353_22300 at 4885.025 kb on + strand, within AO353_22300 at 4885.025 kb on + strand, within AO353_22300 at 4885.025 kb on + strand, within AO353_22300 at 4885.025 kb on + strand, within AO353_22300 at 4885.026 kb on - strand at 4885.026 kb on - strand, within AO353_22300 at 4885.026 kb on - strand, within AO353_22300 at 4885.026 kb on - strand, within AO353_22300 at 4885.026 kb on - strand, within AO353_22300 at 4885.026 kb on - strand, within AO353_22300 at 4885.026 kb on - strand, within AO353_22300 at 4885.127 kb on + strand, within AO353_22300 at 4885.128 kb on - strand, within AO353_22300 at 4885.128 kb on - strand, within AO353_22300 at 4885.169 kb on + strand, within AO353_22300 at 4885.169 kb on + strand, within AO353_22300 at 4885.169 kb on + strand, within AO353_22300 at 4885.169 kb on + strand, within AO353_22300 at 4885.169 kb on + strand, within AO353_22300 at 4885.170 kb on - strand, within AO353_22300 at 4885.170 kb on - strand, within AO353_22300 at 4885.170 kb on - strand at 4885.229 kb on + strand at 4885.230 kb on - strand at 4885.230 kb on - strand at 4885.230 kb on - strand at 4885.291 kb on + strand at 4885.350 kb on + strand at 4885.350 kb on + strand at 4885.356 kb on + strand at 4885.356 kb on + strand at 4885.356 kb on + strand at 4885.357 kb on - strand at 4885.357 kb on - strand at 4885.357 kb on - strand at 4885.357 kb on - strand at 4885.376 kb on + strand at 4885.376 kb on + strand at 4885.376 kb on + strand at 4885.377 kb on - strand at 4885.377 kb on - strand at 4885.377 kb on - strand at 4885.377 kb on - strand at 4885.377 kb on - strand at 4885.407 kb on - strand, within AO353_22305 at 4885.407 kb on - strand, within AO353_22305 at 4885.407 kb on - strand, within AO353_22305 at 4885.407 kb on - strand, within AO353_22305 at 4885.438 kb on - strand, within AO353_22305 at 4885.762 kb on + strand at 4885.763 kb on - strand at 4885.780 kb on + strand at 4885.780 kb on + strand at 4885.963 kb on - strand, within AO353_22310 at 4886.036 kb on + strand, within AO353_22310 at 4886.036 kb on + strand, within AO353_22310 at 4886.124 kb on + strand, within AO353_22310 at 4886.124 kb on + strand, within AO353_22310 at 4886.124 kb on + strand, within AO353_22310 at 4886.125 kb on - strand, within AO353_22310 at 4886.134 kb on + strand, within AO353_22310 at 4886.135 kb on - strand, within AO353_22310 at 4886.236 kb on + strand, within AO353_22310 at 4886.236 kb on + strand, within AO353_22310 at 4886.398 kb on - strand, within AO353_22310 at 4886.398 kb on - strand, within AO353_22310 at 4886.398 kb on - strand, within AO353_22310 at 4886.398 kb on - strand, within AO353_22310 at 4886.452 kb on + strand, within AO353_22310 at 4886.452 kb on + strand, within AO353_22310 at 4886.453 kb on - strand, within AO353_22310 at 4886.466 kb on + strand, within AO353_22310 at 4886.467 kb on - strand, within AO353_22310 at 4886.467 kb on - strand, within AO353_22310 at 4886.648 kb on - strand, within AO353_22310 at 4886.648 kb on - strand, within AO353_22310 at 4886.683 kb on + strand, within AO353_22310 at 4886.683 kb on + strand, within AO353_22310 at 4886.683 kb on + strand, within AO353_22310 at 4886.683 kb on + strand, within AO353_22310 at 4886.683 kb on + strand, within AO353_22310 at 4886.684 kb on - strand, within AO353_22310 at 4886.684 kb on - strand, within AO353_22310 at 4886.687 kb on + strand, within AO353_22310 at 4886.687 kb on + strand, within AO353_22310 at 4886.687 kb on + strand, within AO353_22310 at 4886.687 kb on + strand, within AO353_22310 at 4886.687 kb on + strand, within AO353_22310 at 4886.687 kb on + strand, within AO353_22310 at 4886.688 kb on - strand, within AO353_22310 at 4886.688 kb on - strand, within AO353_22310 at 4886.688 kb on - strand, within AO353_22310 at 4886.688 kb on - strand, within AO353_22310 at 4886.688 kb on - strand, within AO353_22310 at 4886.688 kb on - strand at 4886.688 kb on - strand, within AO353_22310 at 4886.688 kb on - strand, within AO353_22310 at 4886.688 kb on - strand, within AO353_22310 at 4886.729 kb on + strand, within AO353_22310 at 4886.729 kb on + strand, within AO353_22310 at 4886.730 kb on - strand, within AO353_22310
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 4,884,518 + +0.5 4,884,551 + -0.9 4,884,551 + -0.9 4,884,551 + -1.3 4,884,551 + -0.8 4,884,552 - -0.8 4,884,552 - -1.1 4,884,552 - -1.5 4,884,552 - -0.1 4,884,582 + -1.0 4,884,582 + +1.0 4,884,582 + -0.3 4,884,582 + -0.8 4,884,583 - +0.2 4,884,598 + -0.5 4,884,598 + -1.3 4,884,641 - -3.0 4,884,892 + AO353_22300 0.43 -1.0 4,884,893 - AO353_22300 0.43 -0.8 4,884,893 - AO353_22300 0.43 -1.7 4,884,912 + AO353_22300 0.46 -0.8 4,884,912 + AO353_22300 0.46 -0.9 4,884,913 - AO353_22300 0.46 -1.4 4,884,913 - AO353_22300 0.46 +0.8 4,884,913 - AO353_22300 0.46 -0.5 4,884,946 + AO353_22300 0.51 +0.0 4,884,947 - AO353_22300 0.51 -0.5 4,884,947 - AO353_22300 0.51 +0.5 4,885,025 + AO353_22300 0.63 +1.2 4,885,025 + AO353_22300 0.63 -1.3 4,885,025 + AO353_22300 0.63 +0.9 4,885,025 + AO353_22300 0.63 -1.3 4,885,025 + AO353_22300 0.63 -1.1 4,885,025 + AO353_22300 0.63 -1.0 4,885,026 - +1.3 4,885,026 - AO353_22300 0.63 -1.9 4,885,026 - AO353_22300 0.63 -1.3 4,885,026 - AO353_22300 0.63 +0.5 4,885,026 - AO353_22300 0.63 +3.0 4,885,026 - AO353_22300 0.63 +0.5 4,885,026 - AO353_22300 0.63 -1.2 4,885,127 + AO353_22300 0.78 +0.2 4,885,128 - AO353_22300 0.79 -0.3 4,885,128 - AO353_22300 0.79 +1.0 4,885,169 + AO353_22300 0.85 -0.3 4,885,169 + AO353_22300 0.85 +0.9 4,885,169 + AO353_22300 0.85 +0.3 4,885,169 + AO353_22300 0.85 +1.1 4,885,169 + AO353_22300 0.85 -1.1 4,885,170 - AO353_22300 0.85 +1.9 4,885,170 - AO353_22300 0.85 +0.9 4,885,170 - +0.0 4,885,229 + -0.4 4,885,230 - -2.3 4,885,230 - +0.1 4,885,230 - -0.4 4,885,291 + +0.7 4,885,350 + +1.9 4,885,350 + -0.3 4,885,356 + -0.2 4,885,356 + -0.7 4,885,356 + -2.0 4,885,357 - -0.2 4,885,357 - +0.4 4,885,357 - -0.1 4,885,357 - -0.7 4,885,376 + -0.9 4,885,376 + +0.1 4,885,376 + +1.1 4,885,377 - +1.3 4,885,377 - -0.5 4,885,377 - -1.4 4,885,377 - -0.1 4,885,377 - +2.3 4,885,407 - AO353_22305 0.14 -1.1 4,885,407 - AO353_22305 0.14 -1.9 4,885,407 - AO353_22305 0.14 +0.1 4,885,407 - AO353_22305 0.14 -0.9 4,885,438 - AO353_22305 0.21 -1.5 4,885,762 + -0.4 4,885,763 - +2.3 4,885,780 + +0.4 4,885,780 + -0.7 4,885,963 - AO353_22310 0.11 -0.4 4,886,036 + AO353_22310 0.16 -1.4 4,886,036 + AO353_22310 0.16 +0.3 4,886,124 + AO353_22310 0.21 +0.6 4,886,124 + AO353_22310 0.21 -0.2 4,886,124 + AO353_22310 0.21 +0.0 4,886,125 - AO353_22310 0.21 +1.0 4,886,134 + AO353_22310 0.22 -1.5 4,886,135 - AO353_22310 0.22 +1.2 4,886,236 + AO353_22310 0.28 -0.5 4,886,236 + AO353_22310 0.28 +0.8 4,886,398 - AO353_22310 0.39 -0.5 4,886,398 - AO353_22310 0.39 -0.4 4,886,398 - AO353_22310 0.39 -1.8 4,886,398 - AO353_22310 0.39 +1.0 4,886,452 + AO353_22310 0.42 +2.0 4,886,452 + AO353_22310 0.42 +0.4 4,886,453 - AO353_22310 0.42 -1.2 4,886,466 + AO353_22310 0.43 +0.9 4,886,467 - AO353_22310 0.43 -2.5 4,886,467 - AO353_22310 0.43 +0.5 4,886,648 - AO353_22310 0.54 -0.4 4,886,648 - AO353_22310 0.54 +0.1 4,886,683 + AO353_22310 0.57 -1.7 4,886,683 + AO353_22310 0.57 -2.8 4,886,683 + AO353_22310 0.57 -1.4 4,886,683 + AO353_22310 0.57 +0.4 4,886,683 + AO353_22310 0.57 +2.3 4,886,684 - AO353_22310 0.57 -0.3 4,886,684 - AO353_22310 0.57 -0.1 4,886,687 + AO353_22310 0.57 -0.6 4,886,687 + AO353_22310 0.57 +0.8 4,886,687 + AO353_22310 0.57 -0.8 4,886,687 + AO353_22310 0.57 -1.0 4,886,687 + AO353_22310 0.57 -0.5 4,886,687 + AO353_22310 0.57 -1.4 4,886,688 - AO353_22310 0.57 +0.8 4,886,688 - AO353_22310 0.57 +1.0 4,886,688 - AO353_22310 0.57 -2.4 4,886,688 - AO353_22310 0.57 -0.9 4,886,688 - AO353_22310 0.57 +0.7 4,886,688 - -0.5 4,886,688 - AO353_22310 0.57 +0.6 4,886,688 - AO353_22310 0.57 +0.5 4,886,688 - AO353_22310 0.57 -0.6 4,886,729 + AO353_22310 0.60 -0.8 4,886,729 + AO353_22310 0.60 -0.8 4,886,730 - AO353_22310 0.60 -1.3
Or see this region's nucleotide sequence