Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_22305

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_22295 and AO353_22300 are separated by 120 nucleotidesAO353_22300 and AO353_22305 are separated by 83 nucleotidesAO353_22305 and AO353_22310 are separated by 19 nucleotides AO353_22295: AO353_22295 - LysR family transcriptional regulator, at 4,883,600 to 4,884,493 _22295 AO353_22300: AO353_22300 - chloroperoxidase, at 4,884,614 to 4,885,267 _22300 AO353_22305: AO353_22305 - LysR family transcriptional regulator, at 4,885,351 to 4,885,764 _22305 AO353_22310: AO353_22310 - MFS transporter, at 4,885,784 to 4,887,370 _22310 Position (kb) 4885 4886Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4884.518 kb on + strandat 4884.551 kb on + strandat 4884.551 kb on + strandat 4884.551 kb on + strandat 4884.551 kb on + strandat 4884.552 kb on - strandat 4884.552 kb on - strandat 4884.552 kb on - strandat 4884.552 kb on - strandat 4884.582 kb on + strandat 4884.582 kb on + strandat 4884.582 kb on + strandat 4884.582 kb on + strandat 4884.583 kb on - strandat 4884.598 kb on + strandat 4884.598 kb on + strandat 4884.641 kb on - strandat 4884.892 kb on + strand, within AO353_22300at 4884.893 kb on - strand, within AO353_22300at 4884.893 kb on - strand, within AO353_22300at 4884.912 kb on + strand, within AO353_22300at 4884.912 kb on + strand, within AO353_22300at 4884.913 kb on - strand, within AO353_22300at 4884.913 kb on - strand, within AO353_22300at 4884.913 kb on - strand, within AO353_22300at 4884.946 kb on + strand, within AO353_22300at 4884.947 kb on - strand, within AO353_22300at 4884.947 kb on - strand, within AO353_22300at 4885.025 kb on + strand, within AO353_22300at 4885.025 kb on + strand, within AO353_22300at 4885.025 kb on + strand, within AO353_22300at 4885.025 kb on + strand, within AO353_22300at 4885.025 kb on + strand, within AO353_22300at 4885.025 kb on + strand, within AO353_22300at 4885.026 kb on - strandat 4885.026 kb on - strand, within AO353_22300at 4885.026 kb on - strand, within AO353_22300at 4885.026 kb on - strand, within AO353_22300at 4885.026 kb on - strand, within AO353_22300at 4885.026 kb on - strand, within AO353_22300at 4885.026 kb on - strand, within AO353_22300at 4885.127 kb on + strand, within AO353_22300at 4885.128 kb on - strand, within AO353_22300at 4885.128 kb on - strand, within AO353_22300at 4885.169 kb on + strand, within AO353_22300at 4885.169 kb on + strand, within AO353_22300at 4885.169 kb on + strand, within AO353_22300at 4885.169 kb on + strand, within AO353_22300at 4885.169 kb on + strand, within AO353_22300at 4885.170 kb on - strand, within AO353_22300at 4885.170 kb on - strand, within AO353_22300at 4885.170 kb on - strandat 4885.229 kb on + strandat 4885.230 kb on - strandat 4885.230 kb on - strandat 4885.230 kb on - strandat 4885.291 kb on + strandat 4885.350 kb on + strandat 4885.350 kb on + strandat 4885.356 kb on + strandat 4885.356 kb on + strandat 4885.356 kb on + strandat 4885.357 kb on - strandat 4885.357 kb on - strandat 4885.357 kb on - strandat 4885.357 kb on - strandat 4885.376 kb on + strandat 4885.376 kb on + strandat 4885.376 kb on + strandat 4885.377 kb on - strandat 4885.377 kb on - strandat 4885.377 kb on - strandat 4885.377 kb on - strandat 4885.377 kb on - strandat 4885.407 kb on - strand, within AO353_22305at 4885.407 kb on - strand, within AO353_22305at 4885.407 kb on - strand, within AO353_22305at 4885.407 kb on - strand, within AO353_22305at 4885.438 kb on - strand, within AO353_22305at 4885.762 kb on + strandat 4885.763 kb on - strandat 4885.780 kb on + strandat 4885.780 kb on + strandat 4885.963 kb on - strand, within AO353_22310at 4886.036 kb on + strand, within AO353_22310at 4886.036 kb on + strand, within AO353_22310at 4886.124 kb on + strand, within AO353_22310at 4886.124 kb on + strand, within AO353_22310at 4886.124 kb on + strand, within AO353_22310at 4886.125 kb on - strand, within AO353_22310at 4886.134 kb on + strand, within AO353_22310at 4886.135 kb on - strand, within AO353_22310at 4886.236 kb on + strand, within AO353_22310at 4886.236 kb on + strand, within AO353_22310at 4886.398 kb on - strand, within AO353_22310at 4886.398 kb on - strand, within AO353_22310at 4886.398 kb on - strand, within AO353_22310at 4886.398 kb on - strand, within AO353_22310at 4886.452 kb on + strand, within AO353_22310at 4886.452 kb on + strand, within AO353_22310at 4886.453 kb on - strand, within AO353_22310at 4886.466 kb on + strand, within AO353_22310at 4886.467 kb on - strand, within AO353_22310at 4886.467 kb on - strand, within AO353_22310at 4886.648 kb on - strand, within AO353_22310at 4886.648 kb on - strand, within AO353_22310at 4886.683 kb on + strand, within AO353_22310at 4886.683 kb on + strand, within AO353_22310at 4886.683 kb on + strand, within AO353_22310at 4886.683 kb on + strand, within AO353_22310at 4886.683 kb on + strand, within AO353_22310at 4886.684 kb on - strand, within AO353_22310at 4886.684 kb on - strand, within AO353_22310at 4886.687 kb on + strand, within AO353_22310at 4886.687 kb on + strand, within AO353_22310at 4886.687 kb on + strand, within AO353_22310at 4886.687 kb on + strand, within AO353_22310at 4886.687 kb on + strand, within AO353_22310at 4886.687 kb on + strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strandat 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.688 kb on - strand, within AO353_22310at 4886.729 kb on + strand, within AO353_22310at 4886.729 kb on + strand, within AO353_22310at 4886.730 kb on - strand, within AO353_22310

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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4,884,518 + +0.5
4,884,551 + -0.9
4,884,551 + -0.9
4,884,551 + -1.3
4,884,551 + -0.8
4,884,552 - -0.8
4,884,552 - -1.1
4,884,552 - -1.5
4,884,552 - -0.1
4,884,582 + -1.0
4,884,582 + +1.0
4,884,582 + -0.3
4,884,582 + -0.8
4,884,583 - +0.2
4,884,598 + -0.5
4,884,598 + -1.3
4,884,641 - -3.0
4,884,892 + AO353_22300 0.43 -1.0
4,884,893 - AO353_22300 0.43 -0.8
4,884,893 - AO353_22300 0.43 -1.7
4,884,912 + AO353_22300 0.46 -0.8
4,884,912 + AO353_22300 0.46 -0.9
4,884,913 - AO353_22300 0.46 -1.4
4,884,913 - AO353_22300 0.46 +0.8
4,884,913 - AO353_22300 0.46 -0.5
4,884,946 + AO353_22300 0.51 +0.0
4,884,947 - AO353_22300 0.51 -0.5
4,884,947 - AO353_22300 0.51 +0.5
4,885,025 + AO353_22300 0.63 +1.2
4,885,025 + AO353_22300 0.63 -1.3
4,885,025 + AO353_22300 0.63 +0.9
4,885,025 + AO353_22300 0.63 -1.3
4,885,025 + AO353_22300 0.63 -1.1
4,885,025 + AO353_22300 0.63 -1.0
4,885,026 - +1.3
4,885,026 - AO353_22300 0.63 -1.9
4,885,026 - AO353_22300 0.63 -1.3
4,885,026 - AO353_22300 0.63 +0.5
4,885,026 - AO353_22300 0.63 +3.0
4,885,026 - AO353_22300 0.63 +0.5
4,885,026 - AO353_22300 0.63 -1.2
4,885,127 + AO353_22300 0.78 +0.2
4,885,128 - AO353_22300 0.79 -0.3
4,885,128 - AO353_22300 0.79 +1.0
4,885,169 + AO353_22300 0.85 -0.3
4,885,169 + AO353_22300 0.85 +0.9
4,885,169 + AO353_22300 0.85 +0.3
4,885,169 + AO353_22300 0.85 +1.1
4,885,169 + AO353_22300 0.85 -1.1
4,885,170 - AO353_22300 0.85 +1.9
4,885,170 - AO353_22300 0.85 +0.9
4,885,170 - +0.0
4,885,229 + -0.4
4,885,230 - -2.3
4,885,230 - +0.1
4,885,230 - -0.4
4,885,291 + +0.7
4,885,350 + +1.9
4,885,350 + -0.3
4,885,356 + -0.2
4,885,356 + -0.7
4,885,356 + -2.0
4,885,357 - -0.2
4,885,357 - +0.4
4,885,357 - -0.1
4,885,357 - -0.7
4,885,376 + -0.9
4,885,376 + +0.1
4,885,376 + +1.1
4,885,377 - +1.3
4,885,377 - -0.5
4,885,377 - -1.4
4,885,377 - -0.1
4,885,377 - +2.3
4,885,407 - AO353_22305 0.14 -1.1
4,885,407 - AO353_22305 0.14 -1.9
4,885,407 - AO353_22305 0.14 +0.1
4,885,407 - AO353_22305 0.14 -0.9
4,885,438 - AO353_22305 0.21 -1.5
4,885,762 + -0.4
4,885,763 - +2.3
4,885,780 + +0.4
4,885,780 + -0.7
4,885,963 - AO353_22310 0.11 -0.4
4,886,036 + AO353_22310 0.16 -1.4
4,886,036 + AO353_22310 0.16 +0.3
4,886,124 + AO353_22310 0.21 +0.6
4,886,124 + AO353_22310 0.21 -0.2
4,886,124 + AO353_22310 0.21 +0.0
4,886,125 - AO353_22310 0.21 +1.0
4,886,134 + AO353_22310 0.22 -1.5
4,886,135 - AO353_22310 0.22 +1.2
4,886,236 + AO353_22310 0.28 -0.5
4,886,236 + AO353_22310 0.28 +0.8
4,886,398 - AO353_22310 0.39 -0.5
4,886,398 - AO353_22310 0.39 -0.4
4,886,398 - AO353_22310 0.39 -1.8
4,886,398 - AO353_22310 0.39 +1.0
4,886,452 + AO353_22310 0.42 +2.0
4,886,452 + AO353_22310 0.42 +0.4
4,886,453 - AO353_22310 0.42 -1.2
4,886,466 + AO353_22310 0.43 +0.9
4,886,467 - AO353_22310 0.43 -2.5
4,886,467 - AO353_22310 0.43 +0.5
4,886,648 - AO353_22310 0.54 -0.4
4,886,648 - AO353_22310 0.54 +0.1
4,886,683 + AO353_22310 0.57 -1.7
4,886,683 + AO353_22310 0.57 -2.8
4,886,683 + AO353_22310 0.57 -1.4
4,886,683 + AO353_22310 0.57 +0.4
4,886,683 + AO353_22310 0.57 +2.3
4,886,684 - AO353_22310 0.57 -0.3
4,886,684 - AO353_22310 0.57 -0.1
4,886,687 + AO353_22310 0.57 -0.6
4,886,687 + AO353_22310 0.57 +0.8
4,886,687 + AO353_22310 0.57 -0.8
4,886,687 + AO353_22310 0.57 -1.0
4,886,687 + AO353_22310 0.57 -0.5
4,886,687 + AO353_22310 0.57 -1.4
4,886,688 - AO353_22310 0.57 +0.8
4,886,688 - AO353_22310 0.57 +1.0
4,886,688 - AO353_22310 0.57 -2.4
4,886,688 - AO353_22310 0.57 -0.9
4,886,688 - AO353_22310 0.57 +0.7
4,886,688 - -0.5
4,886,688 - AO353_22310 0.57 +0.6
4,886,688 - AO353_22310 0.57 +0.5
4,886,688 - AO353_22310 0.57 -0.6
4,886,729 + AO353_22310 0.60 -0.8
4,886,729 + AO353_22310 0.60 -0.8
4,886,730 - AO353_22310 0.60 -1.3

Or see this region's nucleotide sequence