Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21110

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21105 and AO353_21110 overlap by 2 nucleotidesAO353_21110 and AO353_21115 are separated by 372 nucleotidesAO353_21115 and AO353_21120 are separated by 26 nucleotides AO353_21105: AO353_21105 - hypothetical protein, at 4,615,335 to 4,616,129 _21105 AO353_21110: AO353_21110 - hypothetical protein, at 4,616,128 to 4,616,400 _21110 AO353_21115: AO353_21115 - sugar ABC transporter substrate-binding protein, at 4,616,773 to 4,617,330 _21115 AO353_21120: AO353_21120 - hypothetical protein, at 4,617,357 to 4,618,475 _21120 Position (kb) 4616 4617Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4615.143 kb on - strandat 4615.143 kb on - strandat 4615.264 kb on + strandat 4615.265 kb on - strandat 4615.336 kb on + strandat 4615.385 kb on + strandat 4615.387 kb on + strandat 4615.387 kb on + strandat 4615.387 kb on + strandat 4615.387 kb on + strandat 4615.387 kb on + strandat 4615.387 kb on + strandat 4615.388 kb on - strandat 4615.388 kb on - strandat 4615.388 kb on - strandat 4615.388 kb on - strandat 4615.451 kb on - strand, within AO353_21105at 4615.456 kb on + strand, within AO353_21105at 4615.456 kb on + strand, within AO353_21105at 4615.456 kb on + strand, within AO353_21105at 4615.456 kb on + strand, within AO353_21105at 4615.456 kb on + strand, within AO353_21105at 4615.456 kb on + strand, within AO353_21105at 4615.456 kb on + strand, within AO353_21105at 4615.456 kb on + strand, within AO353_21105at 4615.457 kb on - strand, within AO353_21105at 4615.561 kb on + strand, within AO353_21105at 4615.561 kb on + strand, within AO353_21105at 4615.562 kb on - strand, within AO353_21105at 4615.562 kb on - strand, within AO353_21105at 4615.562 kb on - strand, within AO353_21105at 4615.562 kb on - strand, within AO353_21105at 4615.562 kb on - strand, within AO353_21105at 4615.562 kb on - strand, within AO353_21105at 4615.562 kb on - strand, within AO353_21105at 4615.590 kb on + strand, within AO353_21105at 4615.590 kb on + strand, within AO353_21105at 4615.591 kb on - strand, within AO353_21105at 4615.591 kb on - strand, within AO353_21105at 4615.642 kb on + strand, within AO353_21105at 4615.721 kb on + strand, within AO353_21105at 4615.721 kb on + strand, within AO353_21105at 4615.721 kb on + strand, within AO353_21105at 4615.721 kb on + strand, within AO353_21105at 4615.721 kb on + strand, within AO353_21105at 4615.721 kb on + strand, within AO353_21105at 4615.722 kb on - strand, within AO353_21105at 4615.722 kb on - strand, within AO353_21105at 4615.722 kb on - strand, within AO353_21105at 4615.896 kb on + strandat 4615.896 kb on + strand, within AO353_21105at 4615.896 kb on + strand, within AO353_21105at 4615.896 kb on + strand, within AO353_21105at 4615.897 kb on - strand, within AO353_21105at 4615.930 kb on + strand, within AO353_21105at 4615.930 kb on + strand, within AO353_21105at 4615.931 kb on - strand, within AO353_21105at 4615.931 kb on - strand, within AO353_21105at 4616.112 kb on + strandat 4616.113 kb on - strandat 4616.330 kb on + strand, within AO353_21110at 4616.330 kb on + strand, within AO353_21110at 4616.331 kb on - strand, within AO353_21110at 4616.355 kb on - strand, within AO353_21110at 4616.361 kb on + strand, within AO353_21110at 4616.362 kb on - strand, within AO353_21110at 4616.388 kb on - strandat 4616.388 kb on - strandat 4616.394 kb on + strandat 4616.395 kb on - strandat 4616.395 kb on - strandat 4616.569 kb on + strandat 4616.569 kb on + strandat 4616.752 kb on + strandat 4616.752 kb on + strandat 4616.752 kb on + strandat 4616.752 kb on + strandat 4616.752 kb on + strandat 4616.752 kb on + strandat 4616.752 kb on + strandat 4616.752 kb on + strandat 4616.752 kb on + strandat 4616.752 kb on + strandat 4616.752 kb on + strandat 4616.752 kb on + strandat 4616.753 kb on - strandat 4616.753 kb on - strandat 4616.753 kb on - strandat 4616.753 kb on - strandat 4616.753 kb on - strandat 4616.772 kb on + strandat 4616.772 kb on + strandat 4616.772 kb on + strandat 4616.772 kb on + strandat 4616.772 kb on + strandat 4616.772 kb on + strandat 4616.772 kb on + strandat 4616.772 kb on + strandat 4616.772 kb on + strandat 4616.772 kb on + strandat 4616.772 kb on + strandat 4616.772 kb on + strandat 4616.773 kb on - strandat 4616.773 kb on - strandat 4616.773 kb on - strandat 4616.773 kb on - strandat 4616.773 kb on - strandat 4616.773 kb on - strandat 4616.773 kb on - strandat 4616.773 kb on - strandat 4616.773 kb on - strandat 4616.773 kb on - strandat 4616.786 kb on + strandat 4616.826 kb on + strandat 4616.854 kb on + strand, within AO353_21115at 4616.855 kb on - strand, within AO353_21115at 4616.861 kb on + strand, within AO353_21115at 4616.861 kb on + strand, within AO353_21115at 4616.861 kb on + strand, within AO353_21115at 4616.861 kb on + strand, within AO353_21115at 4616.861 kb on + strand, within AO353_21115at 4616.862 kb on - strand, within AO353_21115at 4616.862 kb on - strand, within AO353_21115at 4616.927 kb on + strand, within AO353_21115at 4616.927 kb on + strand, within AO353_21115at 4616.927 kb on + strand, within AO353_21115at 4616.927 kb on + strand, within AO353_21115at 4616.927 kb on + strand, within AO353_21115at 4616.928 kb on - strand, within AO353_21115at 4616.928 kb on - strand, within AO353_21115at 4616.928 kb on - strand, within AO353_21115at 4616.928 kb on - strand, within AO353_21115at 4616.928 kb on - strand, within AO353_21115at 4616.928 kb on - strand, within AO353_21115at 4616.946 kb on + strand, within AO353_21115at 4616.946 kb on + strand, within AO353_21115at 4616.946 kb on + strand, within AO353_21115at 4616.947 kb on - strand, within AO353_21115at 4616.947 kb on - strand, within AO353_21115at 4616.947 kb on - strand, within AO353_21115at 4616.947 kb on - strand, within AO353_21115at 4616.947 kb on - strand, within AO353_21115at 4616.947 kb on - strand, within AO353_21115at 4616.947 kb on - strand, within AO353_21115at 4617.024 kb on + strand, within AO353_21115at 4617.024 kb on + strand, within AO353_21115at 4617.025 kb on - strand, within AO353_21115at 4617.025 kb on - strand, within AO353_21115at 4617.088 kb on + strand, within AO353_21115at 4617.088 kb on + strand, within AO353_21115at 4617.088 kb on + strand, within AO353_21115at 4617.089 kb on - strand, within AO353_21115at 4617.089 kb on - strand, within AO353_21115at 4617.089 kb on - strand, within AO353_21115at 4617.089 kb on - strand, within AO353_21115at 4617.099 kb on + strandat 4617.100 kb on - strand, within AO353_21115at 4617.155 kb on + strand, within AO353_21115at 4617.155 kb on + strand, within AO353_21115at 4617.155 kb on + strand, within AO353_21115at 4617.155 kb on + strand, within AO353_21115at 4617.155 kb on + strand, within AO353_21115at 4617.155 kb on + strand, within AO353_21115at 4617.156 kb on - strand, within AO353_21115at 4617.156 kb on - strand, within AO353_21115at 4617.156 kb on - strand, within AO353_21115at 4617.229 kb on - strand, within AO353_21115at 4617.253 kb on + strand, within AO353_21115at 4617.253 kb on + strand, within AO353_21115at 4617.254 kb on - strand, within AO353_21115at 4617.254 kb on - strand, within AO353_21115at 4617.313 kb on - strandat 4617.346 kb on + strandat 4617.353 kb on + strandat 4617.353 kb on + strandat 4617.354 kb on - strandat 4617.354 kb on - strandat 4617.392 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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4,615,143 - -2.4
4,615,143 - +0.5
4,615,264 + +0.1
4,615,265 - -0.9
4,615,336 + +0.6
4,615,385 + -0.2
4,615,387 + -0.1
4,615,387 + +0.5
4,615,387 + +0.8
4,615,387 + -1.4
4,615,387 + -0.3
4,615,387 + -0.2
4,615,388 - -1.0
4,615,388 - +0.9
4,615,388 - -1.8
4,615,388 - -2.1
4,615,451 - AO353_21105 0.15 -1.9
4,615,456 + AO353_21105 0.15 -1.3
4,615,456 + AO353_21105 0.15 -1.1
4,615,456 + AO353_21105 0.15 -0.2
4,615,456 + AO353_21105 0.15 -0.3
4,615,456 + AO353_21105 0.15 -0.6
4,615,456 + AO353_21105 0.15 -2.1
4,615,456 + AO353_21105 0.15 +0.6
4,615,456 + AO353_21105 0.15 +1.1
4,615,457 - AO353_21105 0.15 +2.1
4,615,561 + AO353_21105 0.28 +0.2
4,615,561 + AO353_21105 0.28 +0.6
4,615,562 - AO353_21105 0.29 +1.3
4,615,562 - AO353_21105 0.29 -0.2
4,615,562 - AO353_21105 0.29 +1.1
4,615,562 - AO353_21105 0.29 +1.0
4,615,562 - AO353_21105 0.29 +0.0
4,615,562 - AO353_21105 0.29 -1.8
4,615,562 - AO353_21105 0.29 +0.7
4,615,590 + AO353_21105 0.32 -0.5
4,615,590 + AO353_21105 0.32 +0.6
4,615,591 - AO353_21105 0.32 -0.7
4,615,591 - AO353_21105 0.32 -2.1
4,615,642 + AO353_21105 0.39 -2.4
4,615,721 + AO353_21105 0.49 -0.4
4,615,721 + AO353_21105 0.49 +0.4
4,615,721 + AO353_21105 0.49 -0.9
4,615,721 + AO353_21105 0.49 -0.7
4,615,721 + AO353_21105 0.49 -1.0
4,615,721 + AO353_21105 0.49 -0.2
4,615,722 - AO353_21105 0.49 +0.1
4,615,722 - AO353_21105 0.49 -0.4
4,615,722 - AO353_21105 0.49 +1.6
4,615,896 + +0.6
4,615,896 + AO353_21105 0.71 -0.4
4,615,896 + AO353_21105 0.71 -0.2
4,615,896 + AO353_21105 0.71 -1.3
4,615,897 - AO353_21105 0.71 -1.9
4,615,930 + AO353_21105 0.75 +1.5
4,615,930 + AO353_21105 0.75 +0.4
4,615,931 - AO353_21105 0.75 -0.8
4,615,931 - AO353_21105 0.75 -2.5
4,616,112 + +2.2
4,616,113 - -2.4
4,616,330 + AO353_21110 0.74 -1.2
4,616,330 + AO353_21110 0.74 -0.2
4,616,331 - AO353_21110 0.74 -1.8
4,616,355 - AO353_21110 0.83 -0.8
4,616,361 + AO353_21110 0.85 -0.7
4,616,362 - AO353_21110 0.86 -1.8
4,616,388 - +2.2
4,616,388 - -0.0
4,616,394 + +0.2
4,616,395 - +0.7
4,616,395 - +1.7
4,616,569 + -1.0
4,616,569 + -1.2
4,616,752 + +0.3
4,616,752 + -0.3
4,616,752 + -0.4
4,616,752 + -1.6
4,616,752 + -1.9
4,616,752 + +0.6
4,616,752 + +0.4
4,616,752 + +0.9
4,616,752 + -3.0
4,616,752 + -1.1
4,616,752 + +0.8
4,616,752 + +0.2
4,616,753 - -0.1
4,616,753 - -1.0
4,616,753 - -1.7
4,616,753 - -0.4
4,616,753 - +0.3
4,616,772 + -1.8
4,616,772 + +0.8
4,616,772 + -1.3
4,616,772 + -0.2
4,616,772 + +0.8
4,616,772 + +3.2
4,616,772 + +3.2
4,616,772 + -0.5
4,616,772 + -0.8
4,616,772 + +0.5
4,616,772 + -0.7
4,616,772 + -1.9
4,616,773 - -1.9
4,616,773 - +2.2
4,616,773 - -0.7
4,616,773 - +1.4
4,616,773 - +1.2
4,616,773 - +0.2
4,616,773 - -0.4
4,616,773 - -0.0
4,616,773 - +0.2
4,616,773 - +0.2
4,616,786 + -0.7
4,616,826 + -0.3
4,616,854 + AO353_21115 0.15 +1.2
4,616,855 - AO353_21115 0.15 -0.4
4,616,861 + AO353_21115 0.16 +0.6
4,616,861 + AO353_21115 0.16 +2.2
4,616,861 + AO353_21115 0.16 +0.6
4,616,861 + AO353_21115 0.16 -1.0
4,616,861 + AO353_21115 0.16 -0.4
4,616,862 - AO353_21115 0.16 +1.9
4,616,862 - AO353_21115 0.16 -0.8
4,616,927 + AO353_21115 0.28 +0.7
4,616,927 + AO353_21115 0.28 +0.9
4,616,927 + AO353_21115 0.28 -1.4
4,616,927 + AO353_21115 0.28 -0.0
4,616,927 + AO353_21115 0.28 -0.4
4,616,928 - AO353_21115 0.28 -0.4
4,616,928 - AO353_21115 0.28 +1.3
4,616,928 - AO353_21115 0.28 -1.2
4,616,928 - AO353_21115 0.28 +0.8
4,616,928 - AO353_21115 0.28 +2.7
4,616,928 - AO353_21115 0.28 +1.7
4,616,946 + AO353_21115 0.31 +0.9
4,616,946 + AO353_21115 0.31 -0.2
4,616,946 + AO353_21115 0.31 -0.4
4,616,947 - AO353_21115 0.31 +0.1
4,616,947 - AO353_21115 0.31 +1.6
4,616,947 - AO353_21115 0.31 +1.9
4,616,947 - AO353_21115 0.31 -0.3
4,616,947 - AO353_21115 0.31 -0.8
4,616,947 - AO353_21115 0.31 -1.2
4,616,947 - AO353_21115 0.31 +1.8
4,617,024 + AO353_21115 0.45 -0.8
4,617,024 + AO353_21115 0.45 -1.0
4,617,025 - AO353_21115 0.45 -0.0
4,617,025 - AO353_21115 0.45 +0.1
4,617,088 + AO353_21115 0.56 -1.4
4,617,088 + AO353_21115 0.56 +0.4
4,617,088 + AO353_21115 0.56 +0.3
4,617,089 - AO353_21115 0.57 -0.0
4,617,089 - AO353_21115 0.57 -0.7
4,617,089 - AO353_21115 0.57 +1.2
4,617,089 - AO353_21115 0.57 -0.7
4,617,099 + +0.6
4,617,100 - AO353_21115 0.59 -0.7
4,617,155 + AO353_21115 0.68 +0.2
4,617,155 + AO353_21115 0.68 -1.3
4,617,155 + AO353_21115 0.68 -0.2
4,617,155 + AO353_21115 0.68 +0.5
4,617,155 + AO353_21115 0.68 -0.2
4,617,155 + AO353_21115 0.68 -0.0
4,617,156 - AO353_21115 0.69 +1.6
4,617,156 - AO353_21115 0.69 +1.4
4,617,156 - AO353_21115 0.69 +2.2
4,617,229 - AO353_21115 0.82 -1.1
4,617,253 + AO353_21115 0.86 -0.1
4,617,253 + AO353_21115 0.86 -2.0
4,617,254 - AO353_21115 0.86 +0.3
4,617,254 - AO353_21115 0.86 -2.0
4,617,313 - +0.2
4,617,346 + -1.0
4,617,353 + +0.5
4,617,353 + +0.7
4,617,354 - -0.3
4,617,354 - -0.3
4,617,392 + -0.8

Or see this region's nucleotide sequence