Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21105 and AO353_21110 overlap by 2 nucleotides AO353_21110 and AO353_21115 are separated by 372 nucleotides AO353_21115 and AO353_21120 are separated by 26 nucleotides
AO353_21105: AO353_21105 - hypothetical protein, at 4,615,335 to 4,616,129
_21105
AO353_21110: AO353_21110 - hypothetical protein, at 4,616,128 to 4,616,400
_21110
AO353_21115: AO353_21115 - sugar ABC transporter substrate-binding protein, at 4,616,773 to 4,617,330
_21115
AO353_21120: AO353_21120 - hypothetical protein, at 4,617,357 to 4,618,475
_21120
Position (kb)
4616
4617 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4615.143 kb on - strand at 4615.143 kb on - strand at 4615.264 kb on + strand at 4615.265 kb on - strand at 4615.336 kb on + strand at 4615.385 kb on + strand at 4615.387 kb on + strand at 4615.387 kb on + strand at 4615.387 kb on + strand at 4615.387 kb on + strand at 4615.387 kb on + strand at 4615.387 kb on + strand at 4615.388 kb on - strand at 4615.388 kb on - strand at 4615.388 kb on - strand at 4615.388 kb on - strand at 4615.451 kb on - strand, within AO353_21105 at 4615.456 kb on + strand, within AO353_21105 at 4615.456 kb on + strand, within AO353_21105 at 4615.456 kb on + strand, within AO353_21105 at 4615.456 kb on + strand, within AO353_21105 at 4615.456 kb on + strand, within AO353_21105 at 4615.456 kb on + strand, within AO353_21105 at 4615.456 kb on + strand, within AO353_21105 at 4615.456 kb on + strand, within AO353_21105 at 4615.457 kb on - strand, within AO353_21105 at 4615.561 kb on + strand, within AO353_21105 at 4615.561 kb on + strand, within AO353_21105 at 4615.562 kb on - strand, within AO353_21105 at 4615.562 kb on - strand, within AO353_21105 at 4615.562 kb on - strand, within AO353_21105 at 4615.562 kb on - strand, within AO353_21105 at 4615.562 kb on - strand, within AO353_21105 at 4615.562 kb on - strand, within AO353_21105 at 4615.562 kb on - strand, within AO353_21105 at 4615.590 kb on + strand, within AO353_21105 at 4615.590 kb on + strand, within AO353_21105 at 4615.591 kb on - strand, within AO353_21105 at 4615.591 kb on - strand, within AO353_21105 at 4615.642 kb on + strand, within AO353_21105 at 4615.721 kb on + strand, within AO353_21105 at 4615.721 kb on + strand, within AO353_21105 at 4615.721 kb on + strand, within AO353_21105 at 4615.721 kb on + strand, within AO353_21105 at 4615.721 kb on + strand, within AO353_21105 at 4615.721 kb on + strand, within AO353_21105 at 4615.722 kb on - strand, within AO353_21105 at 4615.722 kb on - strand, within AO353_21105 at 4615.722 kb on - strand, within AO353_21105 at 4615.896 kb on + strand at 4615.896 kb on + strand, within AO353_21105 at 4615.896 kb on + strand, within AO353_21105 at 4615.896 kb on + strand, within AO353_21105 at 4615.897 kb on - strand, within AO353_21105 at 4615.930 kb on + strand, within AO353_21105 at 4615.930 kb on + strand, within AO353_21105 at 4615.931 kb on - strand, within AO353_21105 at 4615.931 kb on - strand, within AO353_21105 at 4616.112 kb on + strand at 4616.113 kb on - strand at 4616.330 kb on + strand, within AO353_21110 at 4616.330 kb on + strand, within AO353_21110 at 4616.331 kb on - strand, within AO353_21110 at 4616.355 kb on - strand, within AO353_21110 at 4616.361 kb on + strand, within AO353_21110 at 4616.362 kb on - strand, within AO353_21110 at 4616.388 kb on - strand at 4616.388 kb on - strand at 4616.394 kb on + strand at 4616.395 kb on - strand at 4616.395 kb on - strand at 4616.569 kb on + strand at 4616.569 kb on + strand at 4616.752 kb on + strand at 4616.752 kb on + strand at 4616.752 kb on + strand at 4616.752 kb on + strand at 4616.752 kb on + strand at 4616.752 kb on + strand at 4616.752 kb on + strand at 4616.752 kb on + strand at 4616.752 kb on + strand at 4616.752 kb on + strand at 4616.752 kb on + strand at 4616.752 kb on + strand at 4616.753 kb on - strand at 4616.753 kb on - strand at 4616.753 kb on - strand at 4616.753 kb on - strand at 4616.753 kb on - strand at 4616.772 kb on + strand at 4616.772 kb on + strand at 4616.772 kb on + strand at 4616.772 kb on + strand at 4616.772 kb on + strand at 4616.772 kb on + strand at 4616.772 kb on + strand at 4616.772 kb on + strand at 4616.772 kb on + strand at 4616.772 kb on + strand at 4616.772 kb on + strand at 4616.772 kb on + strand at 4616.773 kb on - strand at 4616.773 kb on - strand at 4616.773 kb on - strand at 4616.773 kb on - strand at 4616.773 kb on - strand at 4616.773 kb on - strand at 4616.773 kb on - strand at 4616.773 kb on - strand at 4616.773 kb on - strand at 4616.773 kb on - strand at 4616.786 kb on + strand at 4616.826 kb on + strand at 4616.854 kb on + strand, within AO353_21115 at 4616.855 kb on - strand, within AO353_21115 at 4616.861 kb on + strand, within AO353_21115 at 4616.861 kb on + strand, within AO353_21115 at 4616.861 kb on + strand, within AO353_21115 at 4616.861 kb on + strand, within AO353_21115 at 4616.861 kb on + strand, within AO353_21115 at 4616.862 kb on - strand, within AO353_21115 at 4616.862 kb on - strand, within AO353_21115 at 4616.927 kb on + strand, within AO353_21115 at 4616.927 kb on + strand, within AO353_21115 at 4616.927 kb on + strand, within AO353_21115 at 4616.927 kb on + strand, within AO353_21115 at 4616.927 kb on + strand, within AO353_21115 at 4616.928 kb on - strand, within AO353_21115 at 4616.928 kb on - strand, within AO353_21115 at 4616.928 kb on - strand, within AO353_21115 at 4616.928 kb on - strand, within AO353_21115 at 4616.928 kb on - strand, within AO353_21115 at 4616.928 kb on - strand, within AO353_21115 at 4616.946 kb on + strand, within AO353_21115 at 4616.946 kb on + strand, within AO353_21115 at 4616.946 kb on + strand, within AO353_21115 at 4616.947 kb on - strand, within AO353_21115 at 4616.947 kb on - strand, within AO353_21115 at 4616.947 kb on - strand, within AO353_21115 at 4616.947 kb on - strand, within AO353_21115 at 4616.947 kb on - strand, within AO353_21115 at 4616.947 kb on - strand, within AO353_21115 at 4616.947 kb on - strand, within AO353_21115 at 4617.024 kb on + strand, within AO353_21115 at 4617.024 kb on + strand, within AO353_21115 at 4617.025 kb on - strand, within AO353_21115 at 4617.025 kb on - strand, within AO353_21115 at 4617.088 kb on + strand, within AO353_21115 at 4617.088 kb on + strand, within AO353_21115 at 4617.088 kb on + strand, within AO353_21115 at 4617.089 kb on - strand, within AO353_21115 at 4617.089 kb on - strand, within AO353_21115 at 4617.089 kb on - strand, within AO353_21115 at 4617.089 kb on - strand, within AO353_21115 at 4617.099 kb on + strand at 4617.100 kb on - strand, within AO353_21115 at 4617.155 kb on + strand, within AO353_21115 at 4617.155 kb on + strand, within AO353_21115 at 4617.155 kb on + strand, within AO353_21115 at 4617.155 kb on + strand, within AO353_21115 at 4617.155 kb on + strand, within AO353_21115 at 4617.155 kb on + strand, within AO353_21115 at 4617.156 kb on - strand, within AO353_21115 at 4617.156 kb on - strand, within AO353_21115 at 4617.156 kb on - strand, within AO353_21115 at 4617.229 kb on - strand, within AO353_21115 at 4617.253 kb on + strand, within AO353_21115 at 4617.253 kb on + strand, within AO353_21115 at 4617.254 kb on - strand, within AO353_21115 at 4617.254 kb on - strand, within AO353_21115 at 4617.313 kb on - strand at 4617.346 kb on + strand at 4617.353 kb on + strand at 4617.353 kb on + strand at 4617.354 kb on - strand at 4617.354 kb on - strand at 4617.392 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 4,615,143 - -2.4 4,615,143 - +0.5 4,615,264 + +0.1 4,615,265 - -0.9 4,615,336 + +0.6 4,615,385 + -0.2 4,615,387 + -0.1 4,615,387 + +0.5 4,615,387 + +0.8 4,615,387 + -1.4 4,615,387 + -0.3 4,615,387 + -0.2 4,615,388 - -1.0 4,615,388 - +0.9 4,615,388 - -1.8 4,615,388 - -2.1 4,615,451 - AO353_21105 0.15 -1.9 4,615,456 + AO353_21105 0.15 -1.3 4,615,456 + AO353_21105 0.15 -1.1 4,615,456 + AO353_21105 0.15 -0.2 4,615,456 + AO353_21105 0.15 -0.3 4,615,456 + AO353_21105 0.15 -0.6 4,615,456 + AO353_21105 0.15 -2.1 4,615,456 + AO353_21105 0.15 +0.6 4,615,456 + AO353_21105 0.15 +1.1 4,615,457 - AO353_21105 0.15 +2.1 4,615,561 + AO353_21105 0.28 +0.2 4,615,561 + AO353_21105 0.28 +0.6 4,615,562 - AO353_21105 0.29 +1.3 4,615,562 - AO353_21105 0.29 -0.2 4,615,562 - AO353_21105 0.29 +1.1 4,615,562 - AO353_21105 0.29 +1.0 4,615,562 - AO353_21105 0.29 +0.0 4,615,562 - AO353_21105 0.29 -1.8 4,615,562 - AO353_21105 0.29 +0.7 4,615,590 + AO353_21105 0.32 -0.5 4,615,590 + AO353_21105 0.32 +0.6 4,615,591 - AO353_21105 0.32 -0.7 4,615,591 - AO353_21105 0.32 -2.1 4,615,642 + AO353_21105 0.39 -2.4 4,615,721 + AO353_21105 0.49 -0.4 4,615,721 + AO353_21105 0.49 +0.4 4,615,721 + AO353_21105 0.49 -0.9 4,615,721 + AO353_21105 0.49 -0.7 4,615,721 + AO353_21105 0.49 -1.0 4,615,721 + AO353_21105 0.49 -0.2 4,615,722 - AO353_21105 0.49 +0.1 4,615,722 - AO353_21105 0.49 -0.4 4,615,722 - AO353_21105 0.49 +1.6 4,615,896 + +0.6 4,615,896 + AO353_21105 0.71 -0.4 4,615,896 + AO353_21105 0.71 -0.2 4,615,896 + AO353_21105 0.71 -1.3 4,615,897 - AO353_21105 0.71 -1.9 4,615,930 + AO353_21105 0.75 +1.5 4,615,930 + AO353_21105 0.75 +0.4 4,615,931 - AO353_21105 0.75 -0.8 4,615,931 - AO353_21105 0.75 -2.5 4,616,112 + +2.2 4,616,113 - -2.4 4,616,330 + AO353_21110 0.74 -1.2 4,616,330 + AO353_21110 0.74 -0.2 4,616,331 - AO353_21110 0.74 -1.8 4,616,355 - AO353_21110 0.83 -0.8 4,616,361 + AO353_21110 0.85 -0.7 4,616,362 - AO353_21110 0.86 -1.8 4,616,388 - +2.2 4,616,388 - -0.0 4,616,394 + +0.2 4,616,395 - +0.7 4,616,395 - +1.7 4,616,569 + -1.0 4,616,569 + -1.2 4,616,752 + +0.3 4,616,752 + -0.3 4,616,752 + -0.4 4,616,752 + -1.6 4,616,752 + -1.9 4,616,752 + +0.6 4,616,752 + +0.4 4,616,752 + +0.9 4,616,752 + -3.0 4,616,752 + -1.1 4,616,752 + +0.8 4,616,752 + +0.2 4,616,753 - -0.1 4,616,753 - -1.0 4,616,753 - -1.7 4,616,753 - -0.4 4,616,753 - +0.3 4,616,772 + -1.8 4,616,772 + +0.8 4,616,772 + -1.3 4,616,772 + -0.2 4,616,772 + +0.8 4,616,772 + +3.2 4,616,772 + +3.2 4,616,772 + -0.5 4,616,772 + -0.8 4,616,772 + +0.5 4,616,772 + -0.7 4,616,772 + -1.9 4,616,773 - -1.9 4,616,773 - +2.2 4,616,773 - -0.7 4,616,773 - +1.4 4,616,773 - +1.2 4,616,773 - +0.2 4,616,773 - -0.4 4,616,773 - -0.0 4,616,773 - +0.2 4,616,773 - +0.2 4,616,786 + -0.7 4,616,826 + -0.3 4,616,854 + AO353_21115 0.15 +1.2 4,616,855 - AO353_21115 0.15 -0.4 4,616,861 + AO353_21115 0.16 +0.6 4,616,861 + AO353_21115 0.16 +2.2 4,616,861 + AO353_21115 0.16 +0.6 4,616,861 + AO353_21115 0.16 -1.0 4,616,861 + AO353_21115 0.16 -0.4 4,616,862 - AO353_21115 0.16 +1.9 4,616,862 - AO353_21115 0.16 -0.8 4,616,927 + AO353_21115 0.28 +0.7 4,616,927 + AO353_21115 0.28 +0.9 4,616,927 + AO353_21115 0.28 -1.4 4,616,927 + AO353_21115 0.28 -0.0 4,616,927 + AO353_21115 0.28 -0.4 4,616,928 - AO353_21115 0.28 -0.4 4,616,928 - AO353_21115 0.28 +1.3 4,616,928 - AO353_21115 0.28 -1.2 4,616,928 - AO353_21115 0.28 +0.8 4,616,928 - AO353_21115 0.28 +2.7 4,616,928 - AO353_21115 0.28 +1.7 4,616,946 + AO353_21115 0.31 +0.9 4,616,946 + AO353_21115 0.31 -0.2 4,616,946 + AO353_21115 0.31 -0.4 4,616,947 - AO353_21115 0.31 +0.1 4,616,947 - AO353_21115 0.31 +1.6 4,616,947 - AO353_21115 0.31 +1.9 4,616,947 - AO353_21115 0.31 -0.3 4,616,947 - AO353_21115 0.31 -0.8 4,616,947 - AO353_21115 0.31 -1.2 4,616,947 - AO353_21115 0.31 +1.8 4,617,024 + AO353_21115 0.45 -0.8 4,617,024 + AO353_21115 0.45 -1.0 4,617,025 - AO353_21115 0.45 -0.0 4,617,025 - AO353_21115 0.45 +0.1 4,617,088 + AO353_21115 0.56 -1.4 4,617,088 + AO353_21115 0.56 +0.4 4,617,088 + AO353_21115 0.56 +0.3 4,617,089 - AO353_21115 0.57 -0.0 4,617,089 - AO353_21115 0.57 -0.7 4,617,089 - AO353_21115 0.57 +1.2 4,617,089 - AO353_21115 0.57 -0.7 4,617,099 + +0.6 4,617,100 - AO353_21115 0.59 -0.7 4,617,155 + AO353_21115 0.68 +0.2 4,617,155 + AO353_21115 0.68 -1.3 4,617,155 + AO353_21115 0.68 -0.2 4,617,155 + AO353_21115 0.68 +0.5 4,617,155 + AO353_21115 0.68 -0.2 4,617,155 + AO353_21115 0.68 -0.0 4,617,156 - AO353_21115 0.69 +1.6 4,617,156 - AO353_21115 0.69 +1.4 4,617,156 - AO353_21115 0.69 +2.2 4,617,229 - AO353_21115 0.82 -1.1 4,617,253 + AO353_21115 0.86 -0.1 4,617,253 + AO353_21115 0.86 -2.0 4,617,254 - AO353_21115 0.86 +0.3 4,617,254 - AO353_21115 0.86 -2.0 4,617,313 - +0.2 4,617,346 + -1.0 4,617,353 + +0.5 4,617,353 + +0.7 4,617,354 - -0.3 4,617,354 - -0.3 4,617,392 + -0.8
Or see this region's nucleotide sequence