Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_19770 and AO353_19775 overlap by 1 nucleotides AO353_19775 and AO353_19780 overlap by 4 nucleotides AO353_19780 and AO353_19785 are separated by 148 nucleotides
AO353_19770: AO353_19770 - peptidase, at 4,346,152 to 4,346,466
_19770
AO353_19775: AO353_19775 - transcriptional regulator, at 4,346,466 to 4,347,134
_19775
AO353_19780: AO353_19780 - histidine kinase, at 4,347,131 to 4,348,444
_19780
AO353_19785: AO353_19785 - chemotaxis protein, at 4,348,593 to 4,350,740
_19785
Position (kb)
4347
4348
4349 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4346.146 kb on + strand at 4346.147 kb on - strand at 4346.147 kb on - strand at 4346.147 kb on - strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.150 kb on + strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.151 kb on - strand at 4346.161 kb on - strand at 4346.161 kb on - strand at 4346.174 kb on - strand at 4346.174 kb on - strand at 4346.326 kb on - strand, within AO353_19770 at 4346.366 kb on - strand, within AO353_19770 at 4346.366 kb on - strand, within AO353_19770 at 4346.371 kb on + strand, within AO353_19770 at 4346.372 kb on - strand, within AO353_19770 at 4346.372 kb on - strand, within AO353_19770 at 4346.495 kb on - strand at 4346.539 kb on - strand, within AO353_19775 at 4346.578 kb on - strand, within AO353_19775 at 4346.598 kb on + strand, within AO353_19775 at 4346.599 kb on - strand, within AO353_19775 at 4346.599 kb on - strand, within AO353_19775 at 4346.757 kb on + strand, within AO353_19775 at 4346.757 kb on + strand, within AO353_19775 at 4346.757 kb on + strand, within AO353_19775 at 4346.757 kb on + strand, within AO353_19775 at 4346.758 kb on - strand, within AO353_19775 at 4346.946 kb on + strand, within AO353_19775 at 4346.947 kb on - strand, within AO353_19775 at 4346.947 kb on - strand, within AO353_19775 at 4347.004 kb on - strand, within AO353_19775 at 4347.108 kb on + strand at 4347.242 kb on + strand at 4347.243 kb on - strand at 4347.344 kb on + strand, within AO353_19780 at 4347.344 kb on + strand, within AO353_19780 at 4347.368 kb on + strand, within AO353_19780 at 4347.368 kb on + strand, within AO353_19780 at 4347.369 kb on - strand, within AO353_19780 at 4347.369 kb on - strand, within AO353_19780 at 4347.369 kb on - strand, within AO353_19780 at 4347.369 kb on - strand, within AO353_19780 at 4347.369 kb on - strand, within AO353_19780 at 4347.557 kb on + strand, within AO353_19780 at 4347.558 kb on - strand, within AO353_19780 at 4347.558 kb on - strand, within AO353_19780 at 4347.558 kb on - strand, within AO353_19780 at 4347.587 kb on - strand, within AO353_19780 at 4347.587 kb on - strand, within AO353_19780 at 4347.617 kb on - strand, within AO353_19780 at 4347.617 kb on - strand, within AO353_19780 at 4347.642 kb on + strand, within AO353_19780 at 4348.094 kb on + strand, within AO353_19780 at 4348.492 kb on + strand at 4348.492 kb on + strand at 4348.492 kb on + strand at 4348.640 kb on + strand at 4348.641 kb on - strand at 4348.961 kb on + strand, within AO353_19785 at 4348.962 kb on - strand, within AO353_19785 at 4348.980 kb on + strand, within AO353_19785 at 4348.980 kb on + strand, within AO353_19785 at 4348.980 kb on + strand, within AO353_19785 at 4348.981 kb on - strand, within AO353_19785 at 4348.981 kb on - strand, within AO353_19785 at 4348.981 kb on - strand, within AO353_19785 at 4348.981 kb on - strand, within AO353_19785 at 4349.317 kb on - strand, within AO353_19785 at 4349.336 kb on - strand, within AO353_19785
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 4,346,146 + -2.1 4,346,147 - -0.1 4,346,147 - -0.8 4,346,147 - -1.4 4,346,150 + -0.5 4,346,150 + -1.3 4,346,150 + -0.9 4,346,150 + -0.6 4,346,150 + -2.1 4,346,150 + +0.2 4,346,150 + +1.2 4,346,150 + -0.4 4,346,150 + -2.5 4,346,150 + +1.3 4,346,150 + +2.5 4,346,150 + -0.4 4,346,151 - -1.1 4,346,151 - -0.6 4,346,151 - -0.6 4,346,151 - +0.1 4,346,151 - +0.6 4,346,151 - -1.8 4,346,151 - -0.4 4,346,151 - -2.1 4,346,151 - +1.2 4,346,151 - -0.3 4,346,151 - +0.2 4,346,151 - +1.2 4,346,151 - -0.6 4,346,151 - -0.3 4,346,151 - -1.4 4,346,151 - +1.9 4,346,151 - -0.8 4,346,151 - -2.4 4,346,151 - +0.2 4,346,151 - +0.2 4,346,151 - +0.5 4,346,151 - +0.6 4,346,151 - -0.2 4,346,151 - -0.6 4,346,151 - +0.2 4,346,151 - -1.3 4,346,151 - +1.6 4,346,151 - +0.4 4,346,161 - -0.8 4,346,161 - -1.3 4,346,174 - +2.8 4,346,174 - -0.8 4,346,326 - AO353_19770 0.55 -1.5 4,346,366 - AO353_19770 0.68 -1.1 4,346,366 - AO353_19770 0.68 -1.8 4,346,371 + AO353_19770 0.70 -0.8 4,346,372 - AO353_19770 0.70 -0.1 4,346,372 - AO353_19770 0.70 +0.7 4,346,495 - -1.3 4,346,539 - AO353_19775 0.11 -2.0 4,346,578 - AO353_19775 0.17 -0.4 4,346,598 + AO353_19775 0.20 +1.4 4,346,599 - AO353_19775 0.20 -0.5 4,346,599 - AO353_19775 0.20 +0.6 4,346,757 + AO353_19775 0.43 +0.2 4,346,757 + AO353_19775 0.43 -0.8 4,346,757 + AO353_19775 0.43 +0.7 4,346,757 + AO353_19775 0.43 -0.8 4,346,758 - AO353_19775 0.44 +0.7 4,346,946 + AO353_19775 0.72 -1.3 4,346,947 - AO353_19775 0.72 -0.5 4,346,947 - AO353_19775 0.72 -1.5 4,347,004 - AO353_19775 0.80 -1.3 4,347,108 + +1.5 4,347,242 + +0.5 4,347,243 - -0.8 4,347,344 + AO353_19780 0.16 -0.1 4,347,344 + AO353_19780 0.16 -0.1 4,347,368 + AO353_19780 0.18 -0.6 4,347,368 + AO353_19780 0.18 +0.6 4,347,369 - AO353_19780 0.18 +1.2 4,347,369 - AO353_19780 0.18 -0.8 4,347,369 - AO353_19780 0.18 +1.0 4,347,369 - AO353_19780 0.18 +1.4 4,347,369 - AO353_19780 0.18 -0.7 4,347,557 + AO353_19780 0.32 -0.6 4,347,558 - AO353_19780 0.32 +0.9 4,347,558 - AO353_19780 0.32 +1.0 4,347,558 - AO353_19780 0.32 +1.3 4,347,587 - AO353_19780 0.35 -0.7 4,347,587 - AO353_19780 0.35 +1.0 4,347,617 - AO353_19780 0.37 +0.5 4,347,617 - AO353_19780 0.37 +0.6 4,347,642 + AO353_19780 0.39 -1.0 4,348,094 + AO353_19780 0.73 -0.7 4,348,492 + +0.9 4,348,492 + -1.5 4,348,492 + +1.7 4,348,640 + +0.1 4,348,641 - +0.4 4,348,961 + AO353_19785 0.17 -1.2 4,348,962 - AO353_19785 0.17 +0.4 4,348,980 + AO353_19785 0.18 -0.8 4,348,980 + AO353_19785 0.18 -2.5 4,348,980 + AO353_19785 0.18 +1.2 4,348,981 - AO353_19785 0.18 -1.5 4,348,981 - AO353_19785 0.18 +1.6 4,348,981 - AO353_19785 0.18 -1.7 4,348,981 - AO353_19785 0.18 -0.0 4,349,317 - AO353_19785 0.34 +0.9 4,349,336 - AO353_19785 0.35 -0.1
Or see this region's nucleotide sequence