Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19315

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19305 and AO353_19310 are separated by 59 nucleotidesAO353_19310 and AO353_19315 overlap by 4 nucleotidesAO353_19315 and AO353_19320 are separated by 38 nucleotides AO353_19305: AO353_19305 - 3-methylcrotonyl-CoA carboxylase, at 4,230,081 to 4,232,042 _19305 AO353_19310: AO353_19310 - enoyl-CoA hydratase, at 4,232,102 to 4,232,899 _19310 AO353_19315: AO353_19315 - acyl-CoA dehydrogenase, at 4,232,896 to 4,234,053 _19315 AO353_19320: AO353_19320 - acetyl-CoA carboxylase carboxyltransferase subunit, at 4,234,092 to 4,235,708 _19320 Position (kb) 4232 4233 4234 4235Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4231.998 kb on + strandat 4231.998 kb on + strandat 4231.998 kb on + strandat 4231.999 kb on - strandat 4231.999 kb on - strandat 4232.068 kb on + strandat 4232.069 kb on - strandat 4232.069 kb on - strandat 4232.069 kb on - strandat 4232.103 kb on + strandat 4232.132 kb on + strandat 4232.132 kb on + strandat 4232.133 kb on - strandat 4232.133 kb on - strandat 4232.420 kb on + strand, within AO353_19310at 4232.420 kb on + strand, within AO353_19310at 4232.421 kb on - strand, within AO353_19310at 4232.771 kb on + strand, within AO353_19310at 4232.986 kb on + strandat 4232.986 kb on + strandat 4232.986 kb on + strandat 4232.986 kb on + strandat 4232.986 kb on + strandat 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.024 kb on + strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.025 kb on - strand, within AO353_19315at 4233.026 kb on + strand, within AO353_19315at 4233.026 kb on + strand, within AO353_19315at 4233.026 kb on + strand, within AO353_19315at 4233.026 kb on + strand, within AO353_19315at 4233.026 kb on + strand, within AO353_19315at 4233.027 kb on - strand, within AO353_19315at 4233.027 kb on - strand, within AO353_19315at 4233.027 kb on - strand, within AO353_19315at 4233.045 kb on - strand, within AO353_19315at 4233.137 kb on + strand, within AO353_19315at 4233.137 kb on + strand, within AO353_19315at 4233.138 kb on - strand, within AO353_19315at 4233.138 kb on - strand, within AO353_19315at 4233.138 kb on - strand, within AO353_19315at 4233.138 kb on - strand, within AO353_19315at 4233.138 kb on - strand, within AO353_19315at 4233.155 kb on + strand, within AO353_19315at 4233.156 kb on - strand, within AO353_19315at 4233.263 kb on + strand, within AO353_19315at 4233.263 kb on + strand, within AO353_19315at 4233.263 kb on + strand, within AO353_19315at 4233.287 kb on + strand, within AO353_19315at 4233.287 kb on + strand, within AO353_19315at 4233.288 kb on - strand, within AO353_19315at 4233.419 kb on - strand, within AO353_19315at 4233.611 kb on + strand, within AO353_19315at 4233.612 kb on - strand, within AO353_19315at 4233.612 kb on - strand, within AO353_19315at 4233.612 kb on - strand, within AO353_19315at 4233.612 kb on - strand, within AO353_19315at 4233.708 kb on + strand, within AO353_19315at 4233.709 kb on - strand, within AO353_19315at 4233.777 kb on + strand, within AO353_19315at 4233.777 kb on + strand, within AO353_19315at 4233.778 kb on - strand, within AO353_19315at 4233.778 kb on - strand, within AO353_19315at 4233.854 kb on + strand, within AO353_19315at 4233.854 kb on + strand, within AO353_19315at 4233.854 kb on + strand, within AO353_19315at 4233.855 kb on - strand, within AO353_19315at 4233.855 kb on - strand, within AO353_19315at 4233.855 kb on - strand, within AO353_19315at 4233.855 kb on - strand, within AO353_19315at 4233.860 kb on + strand, within AO353_19315at 4233.860 kb on + strand, within AO353_19315at 4233.860 kb on + strand, within AO353_19315at 4233.861 kb on - strand, within AO353_19315at 4233.861 kb on - strand, within AO353_19315at 4233.861 kb on - strand, within AO353_19315at 4234.017 kb on + strandat 4234.018 kb on - strandat 4234.057 kb on + strandat 4234.057 kb on + strandat 4234.057 kb on + strandat 4234.058 kb on - strandat 4234.058 kb on - strandat 4234.070 kb on - strandat 4234.154 kb on + strandat 4234.154 kb on + strandat 4234.444 kb on + strand, within AO353_19320at 4234.444 kb on + strandat 4234.444 kb on + strand, within AO353_19320at 4234.444 kb on + strand, within AO353_19320at 4234.444 kb on + strand, within AO353_19320at 4234.444 kb on + strand, within AO353_19320at 4234.444 kb on + strand, within AO353_19320at 4234.445 kb on - strand, within AO353_19320at 4234.445 kb on - strand, within AO353_19320at 4234.445 kb on - strand, within AO353_19320at 4234.445 kb on - strand, within AO353_19320at 4234.445 kb on - strand, within AO353_19320at 4234.445 kb on - strand, within AO353_19320at 4234.445 kb on - strand, within AO353_19320at 4234.445 kb on - strand, within AO353_19320at 4234.445 kb on - strand, within AO353_19320at 4234.445 kb on - strand, within AO353_19320at 4234.459 kb on + strand, within AO353_19320at 4234.459 kb on + strand, within AO353_19320at 4234.460 kb on - strand, within AO353_19320at 4234.807 kb on + strand, within AO353_19320at 4234.808 kb on - strand, within AO353_19320at 4234.896 kb on + strand, within AO353_19320at 4234.896 kb on + strand, within AO353_19320at 4234.896 kb on + strand, within AO353_19320at 4234.972 kb on + strand, within AO353_19320at 4234.972 kb on + strand, within AO353_19320at 4234.973 kb on - strand, within AO353_19320

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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4,231,998 + +0.3
4,231,998 + -1.0
4,231,998 + +1.6
4,231,999 - -1.8
4,231,999 - +0.1
4,232,068 + -1.9
4,232,069 - -1.1
4,232,069 - -0.4
4,232,069 - +0.7
4,232,103 + -0.2
4,232,132 + +0.2
4,232,132 + -0.1
4,232,133 - -1.3
4,232,133 - -1.7
4,232,420 + AO353_19310 0.40 +0.6
4,232,420 + AO353_19310 0.40 -0.3
4,232,421 - AO353_19310 0.40 +2.2
4,232,771 + AO353_19310 0.84 -1.5
4,232,986 + -0.7
4,232,986 + -1.1
4,232,986 + -0.0
4,232,986 + -0.7
4,232,986 + -2.2
4,233,024 + AO353_19315 0.11 +0.2
4,233,024 + AO353_19315 0.11 -0.7
4,233,024 + AO353_19315 0.11 +0.2
4,233,024 + AO353_19315 0.11 -2.3
4,233,024 + AO353_19315 0.11 +1.6
4,233,024 + AO353_19315 0.11 -0.7
4,233,024 + AO353_19315 0.11 +0.1
4,233,024 + AO353_19315 0.11 +1.9
4,233,024 + AO353_19315 0.11 +0.6
4,233,024 + AO353_19315 0.11 +0.8
4,233,024 + AO353_19315 0.11 +2.7
4,233,024 + AO353_19315 0.11 -0.4
4,233,024 + AO353_19315 0.11 -1.0
4,233,024 + AO353_19315 0.11 -2.0
4,233,024 + AO353_19315 0.11 -1.8
4,233,024 + AO353_19315 0.11 -0.4
4,233,024 + AO353_19315 0.11 +0.8
4,233,024 + AO353_19315 0.11 -0.8
4,233,024 + AO353_19315 0.11 -1.4
4,233,024 + AO353_19315 0.11 -0.8
4,233,024 + AO353_19315 0.11 -1.4
4,233,024 + AO353_19315 0.11 -1.9
4,233,024 + AO353_19315 0.11 -0.7
4,233,025 - AO353_19315 0.11 -1.4
4,233,025 - AO353_19315 0.11 -1.0
4,233,025 - AO353_19315 0.11 +0.3
4,233,025 - AO353_19315 0.11 +0.2
4,233,025 - AO353_19315 0.11 -0.2
4,233,025 - AO353_19315 0.11 -1.9
4,233,025 - AO353_19315 0.11 -0.3
4,233,025 - AO353_19315 0.11 -2.6
4,233,025 - AO353_19315 0.11 -1.2
4,233,025 - AO353_19315 0.11 +1.0
4,233,025 - AO353_19315 0.11 +0.6
4,233,025 - AO353_19315 0.11 -1.2
4,233,025 - AO353_19315 0.11 -1.3
4,233,025 - AO353_19315 0.11 +1.9
4,233,026 + AO353_19315 0.11 -2.1
4,233,026 + AO353_19315 0.11 +1.0
4,233,026 + AO353_19315 0.11 -0.3
4,233,026 + AO353_19315 0.11 -0.8
4,233,026 + AO353_19315 0.11 -1.8
4,233,027 - AO353_19315 0.11 -0.8
4,233,027 - AO353_19315 0.11 +0.6
4,233,027 - AO353_19315 0.11 -0.3
4,233,045 - AO353_19315 0.13 -1.3
4,233,137 + AO353_19315 0.21 -0.8
4,233,137 + AO353_19315 0.21 +0.2
4,233,138 - AO353_19315 0.21 -1.0
4,233,138 - AO353_19315 0.21 +3.2
4,233,138 - AO353_19315 0.21 -0.2
4,233,138 - AO353_19315 0.21 -1.3
4,233,138 - AO353_19315 0.21 -1.2
4,233,155 + AO353_19315 0.22 -1.7
4,233,156 - AO353_19315 0.22 -2.0
4,233,263 + AO353_19315 0.32 -0.2
4,233,263 + AO353_19315 0.32 -0.4
4,233,263 + AO353_19315 0.32 +0.9
4,233,287 + AO353_19315 0.34 -1.2
4,233,287 + AO353_19315 0.34 -0.6
4,233,288 - AO353_19315 0.34 -1.7
4,233,419 - AO353_19315 0.45 +0.9
4,233,611 + AO353_19315 0.62 +0.0
4,233,612 - AO353_19315 0.62 -1.5
4,233,612 - AO353_19315 0.62 +1.1
4,233,612 - AO353_19315 0.62 -1.8
4,233,612 - AO353_19315 0.62 -2.2
4,233,708 + AO353_19315 0.70 -1.4
4,233,709 - AO353_19315 0.70 -1.5
4,233,777 + AO353_19315 0.76 -2.2
4,233,777 + AO353_19315 0.76 -0.3
4,233,778 - AO353_19315 0.76 -1.5
4,233,778 - AO353_19315 0.76 -1.8
4,233,854 + AO353_19315 0.83 -1.0
4,233,854 + AO353_19315 0.83 +0.7
4,233,854 + AO353_19315 0.83 +0.9
4,233,855 - AO353_19315 0.83 -1.5
4,233,855 - AO353_19315 0.83 +0.9
4,233,855 - AO353_19315 0.83 +1.2
4,233,855 - AO353_19315 0.83 -1.5
4,233,860 + AO353_19315 0.83 -0.2
4,233,860 + AO353_19315 0.83 -0.4
4,233,860 + AO353_19315 0.83 -1.2
4,233,861 - AO353_19315 0.83 +1.2
4,233,861 - AO353_19315 0.83 -0.2
4,233,861 - AO353_19315 0.83 -1.9
4,234,017 + -0.1
4,234,018 - -0.9
4,234,057 + -1.4
4,234,057 + +0.8
4,234,057 + -0.7
4,234,058 - +0.7
4,234,058 - -0.3
4,234,070 - -0.2
4,234,154 + +0.5
4,234,154 + +0.4
4,234,444 + AO353_19320 0.22 -0.4
4,234,444 + +1.2
4,234,444 + AO353_19320 0.22 -1.0
4,234,444 + AO353_19320 0.22 -0.7
4,234,444 + AO353_19320 0.22 +0.3
4,234,444 + AO353_19320 0.22 +0.6
4,234,444 + AO353_19320 0.22 -0.7
4,234,445 - AO353_19320 0.22 -1.4
4,234,445 - AO353_19320 0.22 -1.1
4,234,445 - AO353_19320 0.22 -0.7
4,234,445 - AO353_19320 0.22 +0.0
4,234,445 - AO353_19320 0.22 -2.6
4,234,445 - AO353_19320 0.22 -0.2
4,234,445 - AO353_19320 0.22 +0.3
4,234,445 - AO353_19320 0.22 +0.2
4,234,445 - AO353_19320 0.22 +2.8
4,234,445 - AO353_19320 0.22 -1.5
4,234,459 + AO353_19320 0.23 -0.5
4,234,459 + AO353_19320 0.23 -0.2
4,234,460 - AO353_19320 0.23 -0.2
4,234,807 + AO353_19320 0.44 +0.4
4,234,808 - AO353_19320 0.44 +0.5
4,234,896 + AO353_19320 0.50 +0.6
4,234,896 + AO353_19320 0.50 -0.1
4,234,896 + AO353_19320 0.50 +0.2
4,234,972 + AO353_19320 0.54 +1.3
4,234,972 + AO353_19320 0.54 -0.1
4,234,973 - AO353_19320 0.54 +0.2

Or see this region's nucleotide sequence