Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19245

Experiment: Lomefloxacin 0.001 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_19240 and AO353_19245 are separated by 327 nucleotidesAO353_19245 and AO353_19250 are separated by 76 nucleotidesAO353_19250 and AO353_19255 are separated by 81 nucleotides AO353_19240: AO353_19240 - pseudouridine synthase, at 4,219,535 to 4,220,425 _19240 AO353_19245: AO353_19245 - hypothetical protein, at 4,220,753 to 4,220,974 _19245 AO353_19250: AO353_19250 - molybdenum cofactor guanylyltransferase, at 4,221,051 to 4,221,653 _19250 AO353_19255: AO353_19255 - molybdenum cofactor biosynthesis protein B, at 4,221,735 to 4,222,274 _19255 Position (kb) 4220 4221Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4219.805 kb on + strandat 4219.806 kb on - strand, within AO353_19240at 4219.855 kb on + strand, within AO353_19240at 4219.871 kb on + strand, within AO353_19240at 4219.872 kb on - strand, within AO353_19240at 4219.872 kb on - strand, within AO353_19240at 4219.872 kb on - strand, within AO353_19240at 4219.872 kb on - strand, within AO353_19240at 4220.003 kb on + strand, within AO353_19240at 4220.004 kb on - strand, within AO353_19240at 4220.004 kb on - strand, within AO353_19240at 4220.043 kb on - strand, within AO353_19240at 4220.178 kb on + strand, within AO353_19240at 4220.178 kb on + strand, within AO353_19240at 4220.214 kb on - strand, within AO353_19240at 4220.241 kb on + strand, within AO353_19240at 4220.241 kb on + strand, within AO353_19240at 4220.242 kb on - strand, within AO353_19240at 4220.242 kb on - strand, within AO353_19240at 4220.272 kb on + strand, within AO353_19240at 4220.272 kb on + strand, within AO353_19240at 4220.272 kb on + strand, within AO353_19240at 4220.272 kb on + strand, within AO353_19240at 4220.272 kb on + strand, within AO353_19240at 4220.292 kb on - strand, within AO353_19240at 4220.325 kb on - strand, within AO353_19240at 4220.546 kb on - strandat 4220.546 kb on - strandat 4220.692 kb on + strandat 4220.692 kb on + strandat 4220.692 kb on + strandat 4220.725 kb on + strandat 4220.725 kb on + strandat 4220.726 kb on - strandat 4220.726 kb on - strandat 4220.726 kb on - strandat 4220.731 kb on + strandat 4220.754 kb on + strandat 4220.755 kb on - strandat 4220.755 kb on - strandat 4220.755 kb on - strandat 4220.755 kb on - strandat 4220.755 kb on - strandat 4220.771 kb on - strandat 4220.826 kb on + strand, within AO353_19245at 4220.827 kb on - strand, within AO353_19245at 4220.989 kb on + strandat 4220.989 kb on + strandat 4220.990 kb on - strandat 4221.005 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.020 kb on + strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.021 kb on - strandat 4221.078 kb on + strandat 4221.079 kb on - strandat 4221.079 kb on - strandat 4221.092 kb on + strandat 4221.092 kb on + strandat 4221.093 kb on - strandat 4221.093 kb on - strandat 4221.093 kb on - strandat 4221.093 kb on - strandat 4221.220 kb on - strand, within AO353_19250at 4221.354 kb on + strand, within AO353_19250at 4221.463 kb on + strand, within AO353_19250at 4221.463 kb on + strand, within AO353_19250at 4221.463 kb on + strand, within AO353_19250at 4221.464 kb on - strand, within AO353_19250at 4221.474 kb on - strand, within AO353_19250at 4221.696 kb on + strandat 4221.696 kb on + strandat 4221.696 kb on + strandat 4221.696 kb on + strandat 4221.696 kb on + strandat 4221.696 kb on + strandat 4221.696 kb on + strandat 4221.697 kb on - strandat 4221.697 kb on - strandat 4221.697 kb on - strandat 4221.697 kb on - strandat 4221.698 kb on + strandat 4221.698 kb on + strandat 4221.698 kb on + strandat 4221.698 kb on + strandat 4221.698 kb on + strandat 4221.698 kb on + strandat 4221.698 kb on + strandat 4221.698 kb on + strandat 4221.698 kb on + strandat 4221.699 kb on - strandat 4221.699 kb on - strandat 4221.699 kb on - strandat 4221.699 kb on - strandat 4221.699 kb on - strandat 4221.718 kb on + strandat 4221.718 kb on + strandat 4221.719 kb on - strandat 4221.719 kb on - strandat 4221.719 kb on - strandat 4221.719 kb on - strandat 4221.734 kb on + strandat 4221.734 kb on + strandat 4221.734 kb on + strandat 4221.735 kb on - strandat 4221.754 kb on + strandat 4221.754 kb on + strandat 4221.819 kb on - strand, within AO353_19255at 4221.864 kb on - strand, within AO353_19255at 4221.878 kb on + strand, within AO353_19255at 4221.878 kb on + strand, within AO353_19255at 4221.879 kb on - strand, within AO353_19255at 4221.887 kb on + strand, within AO353_19255at 4221.887 kb on + strand, within AO353_19255at 4221.888 kb on - strand, within AO353_19255at 4221.962 kb on + strand, within AO353_19255

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
remove
4,219,805 + -0.6
4,219,806 - AO353_19240 0.30 +0.6
4,219,855 + AO353_19240 0.36 -0.4
4,219,871 + AO353_19240 0.38 +0.4
4,219,872 - AO353_19240 0.38 +1.6
4,219,872 - AO353_19240 0.38 -1.6
4,219,872 - AO353_19240 0.38 +0.4
4,219,872 - AO353_19240 0.38 -0.1
4,220,003 + AO353_19240 0.53 -0.2
4,220,004 - AO353_19240 0.53 -0.2
4,220,004 - AO353_19240 0.53 -0.3
4,220,043 - AO353_19240 0.57 +0.8
4,220,178 + AO353_19240 0.72 -0.2
4,220,178 + AO353_19240 0.72 +0.6
4,220,214 - AO353_19240 0.76 +0.2
4,220,241 + AO353_19240 0.79 +0.2
4,220,241 + AO353_19240 0.79 -1.2
4,220,242 - AO353_19240 0.79 +1.7
4,220,242 - AO353_19240 0.79 -0.4
4,220,272 + AO353_19240 0.83 +0.9
4,220,272 + AO353_19240 0.83 +0.8
4,220,272 + AO353_19240 0.83 -1.3
4,220,272 + AO353_19240 0.83 -0.4
4,220,272 + AO353_19240 0.83 -1.2
4,220,292 - AO353_19240 0.85 +0.8
4,220,325 - AO353_19240 0.89 +0.0
4,220,546 - +0.4
4,220,546 - +1.4
4,220,692 + -1.7
4,220,692 + +0.8
4,220,692 + -1.2
4,220,725 + -1.8
4,220,725 + -1.2
4,220,726 - +0.5
4,220,726 - +1.4
4,220,726 - +0.6
4,220,731 + +0.5
4,220,754 + -0.6
4,220,755 - +0.9
4,220,755 - -1.7
4,220,755 - -0.8
4,220,755 - +0.7
4,220,755 - +0.2
4,220,771 - +0.3
4,220,826 + AO353_19245 0.33 +1.4
4,220,827 - AO353_19245 0.33 -0.5
4,220,989 + -1.8
4,220,989 + +1.5
4,220,990 - -2.2
4,221,005 + -1.3
4,221,020 + +0.3
4,221,020 + +0.3
4,221,020 + +0.1
4,221,020 + -1.3
4,221,020 + -0.8
4,221,020 + +0.2
4,221,020 + -1.0
4,221,020 + +0.4
4,221,020 + -0.7
4,221,020 + +1.6
4,221,020 + +1.2
4,221,020 + -1.9
4,221,020 + -0.8
4,221,020 + -1.0
4,221,020 + -0.3
4,221,021 - +0.4
4,221,021 - -0.4
4,221,021 - -1.2
4,221,021 - -0.2
4,221,021 - +0.2
4,221,021 - -1.5
4,221,021 - -1.0
4,221,021 - -0.2
4,221,078 + +0.9
4,221,079 - +0.5
4,221,079 - +1.2
4,221,092 + +0.7
4,221,092 + +0.1
4,221,093 - +0.7
4,221,093 - +0.2
4,221,093 - +2.2
4,221,093 - -1.2
4,221,220 - AO353_19250 0.28 +0.2
4,221,354 + AO353_19250 0.50 -1.5
4,221,463 + AO353_19250 0.68 -0.4
4,221,463 + AO353_19250 0.68 +0.2
4,221,463 + AO353_19250 0.68 -1.2
4,221,464 - AO353_19250 0.68 -0.2
4,221,474 - AO353_19250 0.70 +0.2
4,221,696 + -0.8
4,221,696 + +0.4
4,221,696 + +0.3
4,221,696 + -0.6
4,221,696 + +0.4
4,221,696 + +0.4
4,221,696 + +1.2
4,221,697 - -1.3
4,221,697 - -0.1
4,221,697 - -0.5
4,221,697 - +0.4
4,221,698 + +0.9
4,221,698 + -0.4
4,221,698 + +0.5
4,221,698 + -1.8
4,221,698 + +0.5
4,221,698 + -0.9
4,221,698 + -1.5
4,221,698 + -0.4
4,221,698 + -1.4
4,221,699 - -1.7
4,221,699 - -1.3
4,221,699 - +0.2
4,221,699 - +1.2
4,221,699 - -1.3
4,221,718 + -1.0
4,221,718 + +1.0
4,221,719 - +0.6
4,221,719 - -0.0
4,221,719 - +0.4
4,221,719 - -1.6
4,221,734 + +1.5
4,221,734 + +0.5
4,221,734 + +3.2
4,221,735 - +2.2
4,221,754 + -0.2
4,221,754 + +0.4
4,221,819 - AO353_19255 0.16 -1.3
4,221,864 - AO353_19255 0.24 +0.3
4,221,878 + AO353_19255 0.26 +1.4
4,221,878 + AO353_19255 0.26 +1.2
4,221,879 - AO353_19255 0.27 -0.4
4,221,887 + AO353_19255 0.28 +0.0
4,221,887 + AO353_19255 0.28 +1.5
4,221,888 - AO353_19255 0.28 -0.4
4,221,962 + AO353_19255 0.42 -0.1

Or see this region's nucleotide sequence