Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18875 and AO353_18880 overlap by 4 nucleotides AO353_18880 and AO353_18885 overlap by 4 nucleotides AO353_18885 and AO353_18890 overlap by 8 nucleotides
AO353_18875: AO353_18875 - cytochrome C biogenesis protein CcmF, at 4,146,223 to 4,148,211
_18875
AO353_18880: AO353_18880 - thiol:disulfide interchange protein, at 4,148,208 to 4,148,744
_18880
AO353_18885: AO353_18885 - cytochrome C, at 4,148,741 to 4,149,214
_18885
AO353_18890: AO353_18890 - cytochrome C, at 4,149,207 to 4,150,415
_18890
Position (kb) 4148
4149 Strain fitness (log2 ratio) -2
-1
0
1 at 4148.487 kb on + strand, within AO353_18880 at 4149.666 kb on + strand, within AO353_18890 at 4149.681 kb on - strand, within AO353_18890 at 4149.684 kb on + strand, within AO353_18890 at 4149.684 kb on + strand, within AO353_18890 at 4149.684 kb on + strand, within AO353_18890 at 4149.684 kb on + strand, within AO353_18890 at 4149.684 kb on + strand, within AO353_18890 at 4149.685 kb on - strand, within AO353_18890 at 4149.685 kb on - strand, within AO353_18890 at 4149.685 kb on - strand, within AO353_18890 at 4149.685 kb on - strand at 4149.685 kb on - strand, within AO353_18890 at 4149.685 kb on - strand, within AO353_18890 at 4149.685 kb on - strand, within AO353_18890 at 4149.685 kb on - strand, within AO353_18890
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 4,148,487 + AO353_18880 0.52 -0.3 4,149,666 + AO353_18890 0.38 -1.7 4,149,681 - AO353_18890 0.39 -1.9 4,149,684 + AO353_18890 0.39 +0.6 4,149,684 + AO353_18890 0.39 +0.6 4,149,684 + AO353_18890 0.39 -1.3 4,149,684 + AO353_18890 0.39 +0.0 4,149,684 + AO353_18890 0.39 +0.2 4,149,685 - AO353_18890 0.40 +1.6 4,149,685 - AO353_18890 0.40 -0.6 4,149,685 - AO353_18890 0.40 -0.4 4,149,685 - +1.2 4,149,685 - AO353_18890 0.40 -2.3 4,149,685 - AO353_18890 0.40 -0.0 4,149,685 - AO353_18890 0.40 +0.7 4,149,685 - AO353_18890 0.40 -0.6
Or see this region's nucleotide sequence