Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_17555 and AO353_17560 are separated by 131 nucleotides AO353_17560 and AO353_17565 are separated by 173 nucleotides
AO353_17555: AO353_17555 - enoyl-CoA hydratase, at 3,870,365 to 3,871,477
_17555
AO353_17560: AO353_17560 - uracil-DNA glycosylase, at 3,871,609 to 3,872,301
_17560
AO353_17565: AO353_17565 - hypothetical protein, at 3,872,475 to 3,873,512
_17565
Position (kb)
3871
3872
3873 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3870.722 kb on + strand, within AO353_17555 at 3870.722 kb on + strand, within AO353_17555 at 3870.722 kb on + strand, within AO353_17555 at 3870.722 kb on + strand, within AO353_17555 at 3870.722 kb on + strand, within AO353_17555 at 3870.722 kb on + strand, within AO353_17555 at 3870.722 kb on + strand, within AO353_17555 at 3870.722 kb on + strand at 3870.723 kb on - strand, within AO353_17555 at 3870.723 kb on - strand, within AO353_17555 at 3870.723 kb on - strand, within AO353_17555 at 3870.723 kb on - strand, within AO353_17555 at 3870.723 kb on - strand, within AO353_17555 at 3870.723 kb on - strand, within AO353_17555 at 3870.723 kb on - strand, within AO353_17555 at 3870.880 kb on + strand, within AO353_17555 at 3870.880 kb on + strand, within AO353_17555 at 3870.881 kb on - strand, within AO353_17555 at 3871.132 kb on - strand, within AO353_17555 at 3871.159 kb on + strand, within AO353_17555 at 3871.159 kb on + strand, within AO353_17555 at 3871.160 kb on - strand, within AO353_17555 at 3871.165 kb on - strand, within AO353_17555 at 3871.165 kb on - strand, within AO353_17555 at 3871.246 kb on + strand, within AO353_17555 at 3871.247 kb on - strand, within AO353_17555 at 3871.247 kb on - strand, within AO353_17555 at 3871.509 kb on + strand at 3871.509 kb on + strand at 3871.509 kb on + strand at 3871.510 kb on - strand at 3871.510 kb on - strand at 3871.520 kb on + strand at 3871.604 kb on + strand at 3871.605 kb on - strand at 3871.605 kb on - strand at 3871.626 kb on + strand at 3871.627 kb on - strand at 3871.681 kb on + strand, within AO353_17560 at 3871.681 kb on + strand, within AO353_17560 at 3871.681 kb on + strand, within AO353_17560 at 3871.681 kb on + strand, within AO353_17560 at 3871.681 kb on + strand, within AO353_17560 at 3871.681 kb on + strand, within AO353_17560 at 3871.681 kb on + strand, within AO353_17560 at 3871.681 kb on + strand, within AO353_17560 at 3871.681 kb on + strand, within AO353_17560 at 3871.681 kb on + strand, within AO353_17560 at 3871.681 kb on + strand, within AO353_17560 at 3871.681 kb on + strand, within AO353_17560 at 3871.681 kb on + strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.682 kb on - strand, within AO353_17560 at 3871.738 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.903 kb on + strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.904 kb on - strand, within AO353_17560 at 3871.905 kb on + strand, within AO353_17560 at 3871.905 kb on + strand, within AO353_17560 at 3871.906 kb on - strand, within AO353_17560 at 3871.906 kb on - strand, within AO353_17560 at 3871.906 kb on - strand, within AO353_17560 at 3871.906 kb on - strand, within AO353_17560 at 3871.906 kb on - strand, within AO353_17560 at 3871.952 kb on - strand, within AO353_17560 at 3872.056 kb on - strand, within AO353_17560 at 3872.248 kb on + strand at 3872.248 kb on + strand at 3872.248 kb on + strand at 3872.248 kb on + strand at 3872.249 kb on - strand at 3872.249 kb on - strand at 3872.249 kb on - strand at 3872.249 kb on - strand at 3872.414 kb on + strand at 3872.414 kb on + strand at 3872.414 kb on + strand at 3872.414 kb on + strand at 3872.414 kb on + strand at 3872.414 kb on + strand at 3872.414 kb on + strand at 3872.414 kb on + strand at 3872.414 kb on + strand at 3872.414 kb on + strand at 3872.414 kb on + strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.415 kb on - strand at 3872.422 kb on - strand at 3872.422 kb on - strand at 3872.422 kb on - strand at 3872.430 kb on + strand at 3872.504 kb on - strand at 3872.504 kb on - strand at 3872.847 kb on + strand, within AO353_17565 at 3872.847 kb on + strand, within AO353_17565 at 3872.847 kb on + strand, within AO353_17565 at 3872.848 kb on - strand, within AO353_17565 at 3872.848 kb on - strand, within AO353_17565 at 3872.848 kb on - strand, within AO353_17565 at 3872.848 kb on - strand, within AO353_17565 at 3872.848 kb on - strand, within AO353_17565 at 3873.025 kb on + strand at 3873.025 kb on + strand, within AO353_17565 at 3873.025 kb on + strand, within AO353_17565 at 3873.025 kb on + strand, within AO353_17565 at 3873.025 kb on + strand, within AO353_17565 at 3873.025 kb on + strand, within AO353_17565 at 3873.026 kb on - strand, within AO353_17565 at 3873.026 kb on - strand, within AO353_17565 at 3873.026 kb on - strand, within AO353_17565 at 3873.026 kb on - strand, within AO353_17565 at 3873.026 kb on - strand, within AO353_17565 at 3873.026 kb on - strand, within AO353_17565 at 3873.026 kb on - strand, within AO353_17565 at 3873.026 kb on - strand, within AO353_17565
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 3,870,722 + AO353_17555 0.32 +1.2 3,870,722 + AO353_17555 0.32 -1.2 3,870,722 + AO353_17555 0.32 +1.9 3,870,722 + AO353_17555 0.32 +2.2 3,870,722 + AO353_17555 0.32 +0.1 3,870,722 + AO353_17555 0.32 -1.0 3,870,722 + AO353_17555 0.32 +0.8 3,870,722 + +0.8 3,870,723 - AO353_17555 0.32 -0.2 3,870,723 - AO353_17555 0.32 +0.2 3,870,723 - AO353_17555 0.32 +0.8 3,870,723 - AO353_17555 0.32 +0.9 3,870,723 - AO353_17555 0.32 -2.0 3,870,723 - AO353_17555 0.32 +0.4 3,870,723 - AO353_17555 0.32 -0.4 3,870,880 + AO353_17555 0.46 +1.0 3,870,880 + AO353_17555 0.46 -0.7 3,870,881 - AO353_17555 0.46 +1.7 3,871,132 - AO353_17555 0.69 -0.8 3,871,159 + AO353_17555 0.71 +1.1 3,871,159 + AO353_17555 0.71 +0.3 3,871,160 - AO353_17555 0.71 +0.2 3,871,165 - AO353_17555 0.72 -0.4 3,871,165 - AO353_17555 0.72 -2.7 3,871,246 + AO353_17555 0.79 -0.6 3,871,247 - AO353_17555 0.79 -2.0 3,871,247 - AO353_17555 0.79 -0.1 3,871,509 + +1.0 3,871,509 + +0.2 3,871,509 + +0.0 3,871,510 - -1.1 3,871,510 - +0.6 3,871,520 + +0.4 3,871,604 + +2.6 3,871,605 - -0.6 3,871,605 - -1.7 3,871,626 + -0.1 3,871,627 - -0.4 3,871,681 + AO353_17560 0.10 -0.4 3,871,681 + AO353_17560 0.10 +0.0 3,871,681 + AO353_17560 0.10 +1.0 3,871,681 + AO353_17560 0.10 -0.8 3,871,681 + AO353_17560 0.10 -2.2 3,871,681 + AO353_17560 0.10 -1.3 3,871,681 + AO353_17560 0.10 -1.0 3,871,681 + AO353_17560 0.10 +0.6 3,871,681 + AO353_17560 0.10 +0.7 3,871,681 + AO353_17560 0.10 -0.2 3,871,681 + AO353_17560 0.10 -0.6 3,871,681 + AO353_17560 0.10 -1.1 3,871,681 + AO353_17560 0.10 -1.5 3,871,682 - AO353_17560 0.11 -1.5 3,871,682 - AO353_17560 0.11 -1.3 3,871,682 - AO353_17560 0.11 +0.4 3,871,682 - AO353_17560 0.11 -1.1 3,871,682 - AO353_17560 0.11 -2.0 3,871,682 - AO353_17560 0.11 -2.0 3,871,682 - AO353_17560 0.11 +0.9 3,871,682 - AO353_17560 0.11 -2.4 3,871,682 - AO353_17560 0.11 -0.5 3,871,682 - AO353_17560 0.11 -0.6 3,871,682 - AO353_17560 0.11 +0.2 3,871,682 - AO353_17560 0.11 +0.2 3,871,682 - AO353_17560 0.11 +0.1 3,871,682 - AO353_17560 0.11 -0.8 3,871,682 - AO353_17560 0.11 -2.1 3,871,682 - AO353_17560 0.11 +0.0 3,871,682 - AO353_17560 0.11 +0.7 3,871,682 - AO353_17560 0.11 -0.4 3,871,682 - AO353_17560 0.11 -0.6 3,871,682 - AO353_17560 0.11 -0.6 3,871,682 - AO353_17560 0.11 -0.6 3,871,682 - AO353_17560 0.11 -2.0 3,871,682 - AO353_17560 0.11 +0.2 3,871,682 - AO353_17560 0.11 +0.0 3,871,738 + AO353_17560 0.19 -2.3 3,871,903 + AO353_17560 0.42 -0.8 3,871,903 + AO353_17560 0.42 -0.6 3,871,903 + AO353_17560 0.42 -1.4 3,871,903 + AO353_17560 0.42 -1.4 3,871,903 + AO353_17560 0.42 -2.0 3,871,903 + AO353_17560 0.42 +0.0 3,871,903 + AO353_17560 0.42 +1.6 3,871,903 + AO353_17560 0.42 -0.2 3,871,903 + AO353_17560 0.42 +0.9 3,871,903 + AO353_17560 0.42 -0.3 3,871,903 + AO353_17560 0.42 +0.3 3,871,903 + AO353_17560 0.42 -1.6 3,871,903 + AO353_17560 0.42 -1.6 3,871,904 - AO353_17560 0.43 -0.8 3,871,904 - AO353_17560 0.43 +0.8 3,871,904 - AO353_17560 0.43 -1.3 3,871,904 - AO353_17560 0.43 -1.1 3,871,904 - AO353_17560 0.43 +0.2 3,871,904 - AO353_17560 0.43 -1.4 3,871,904 - AO353_17560 0.43 -0.8 3,871,904 - AO353_17560 0.43 -0.3 3,871,904 - AO353_17560 0.43 -0.2 3,871,904 - AO353_17560 0.43 -1.0 3,871,904 - AO353_17560 0.43 -0.4 3,871,904 - AO353_17560 0.43 -0.4 3,871,904 - AO353_17560 0.43 -1.0 3,871,904 - AO353_17560 0.43 +0.0 3,871,905 + AO353_17560 0.43 -2.0 3,871,905 + AO353_17560 0.43 -1.0 3,871,906 - AO353_17560 0.43 -0.6 3,871,906 - AO353_17560 0.43 -1.3 3,871,906 - AO353_17560 0.43 -0.6 3,871,906 - AO353_17560 0.43 +1.0 3,871,906 - AO353_17560 0.43 -0.8 3,871,952 - AO353_17560 0.49 +1.1 3,872,056 - AO353_17560 0.65 -2.7 3,872,248 + -0.6 3,872,248 + -1.2 3,872,248 + -0.1 3,872,248 + -0.2 3,872,249 - +1.1 3,872,249 - -0.4 3,872,249 - +0.8 3,872,249 - -1.2 3,872,414 + -0.2 3,872,414 + +1.7 3,872,414 + +0.1 3,872,414 + +0.8 3,872,414 + +0.2 3,872,414 + -1.0 3,872,414 + -0.4 3,872,414 + +1.5 3,872,414 + +1.2 3,872,414 + +0.8 3,872,414 + +0.9 3,872,415 - -1.7 3,872,415 - -1.1 3,872,415 - -2.1 3,872,415 - +0.1 3,872,415 - -1.3 3,872,415 - +1.0 3,872,415 - -1.8 3,872,415 - +0.1 3,872,415 - +0.7 3,872,415 - +1.8 3,872,415 - +0.8 3,872,415 - -1.1 3,872,415 - +1.2 3,872,415 - +0.7 3,872,422 - -0.8 3,872,422 - -0.3 3,872,422 - -0.7 3,872,430 + +1.9 3,872,504 - +0.6 3,872,504 - -2.2 3,872,847 + AO353_17565 0.36 +0.6 3,872,847 + AO353_17565 0.36 -1.8 3,872,847 + AO353_17565 0.36 -0.8 3,872,848 - AO353_17565 0.36 -0.6 3,872,848 - AO353_17565 0.36 -1.0 3,872,848 - AO353_17565 0.36 -0.5 3,872,848 - AO353_17565 0.36 +1.1 3,872,848 - AO353_17565 0.36 -1.1 3,873,025 + -0.2 3,873,025 + AO353_17565 0.53 +2.2 3,873,025 + AO353_17565 0.53 -0.1 3,873,025 + AO353_17565 0.53 +0.4 3,873,025 + AO353_17565 0.53 -2.2 3,873,025 + AO353_17565 0.53 -0.7 3,873,026 - AO353_17565 0.53 -0.9 3,873,026 - AO353_17565 0.53 -1.6 3,873,026 - AO353_17565 0.53 +0.0 3,873,026 - AO353_17565 0.53 -2.2 3,873,026 - AO353_17565 0.53 -0.9 3,873,026 - AO353_17565 0.53 -0.7 3,873,026 - AO353_17565 0.53 +1.3 3,873,026 - AO353_17565 0.53 +0.4
Or see this region's nucleotide sequence