Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_15660 and AO353_15665 are separated by 199 nucleotides AO353_15665 and AO353_15670 are separated by 8 nucleotides AO353_15670 and AO353_15675 are separated by 398 nucleotides
AO353_15660: AO353_15660 - hypothetical protein, at 3,463,886 to 3,464,128
_15660
AO353_15665: AO353_15665 - chemotaxis protein CheY, at 3,464,328 to 3,465,038
_15665
AO353_15670: AO353_15670 - histidine kinase, at 3,465,047 to 3,466,384
_15670
AO353_15675: AO353_15675 - hypothetical protein, at 3,466,783 to 3,467,787
_15675
Position (kb)
3465
3466
3467 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 3464.154 kb on + strand at 3464.154 kb on + strand at 3464.154 kb on + strand at 3464.154 kb on + strand at 3464.155 kb on - strand at 3464.155 kb on - strand at 3464.155 kb on - strand at 3464.155 kb on - strand at 3464.232 kb on - strand at 3464.232 kb on - strand at 3464.263 kb on + strand at 3464.263 kb on + strand at 3464.263 kb on + strand at 3464.263 kb on + strand at 3464.263 kb on + strand at 3464.263 kb on + strand at 3464.263 kb on + strand at 3464.263 kb on + strand at 3464.263 kb on + strand at 3464.263 kb on + strand at 3464.263 kb on + strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.264 kb on - strand at 3464.265 kb on + strand at 3464.265 kb on + strand at 3464.265 kb on + strand at 3464.266 kb on - strand at 3464.266 kb on - strand at 3464.290 kb on + strand at 3464.290 kb on + strand at 3464.290 kb on + strand at 3464.290 kb on + strand at 3464.290 kb on + strand at 3464.291 kb on - strand at 3464.291 kb on - strand at 3464.291 kb on - strand at 3464.291 kb on - strand at 3464.291 kb on - strand at 3464.291 kb on - strand at 3464.291 kb on - strand at 3464.291 kb on - strand at 3464.291 kb on - strand at 3464.313 kb on + strand at 3464.313 kb on + strand at 3464.313 kb on + strand at 3464.313 kb on + strand at 3464.313 kb on + strand at 3464.313 kb on + strand at 3464.314 kb on - strand at 3464.314 kb on - strand at 3464.314 kb on - strand at 3464.314 kb on - strand at 3464.314 kb on - strand at 3464.314 kb on - strand at 3464.403 kb on + strand, within AO353_15665 at 3464.619 kb on + strand, within AO353_15665 at 3464.620 kb on - strand, within AO353_15665 at 3464.872 kb on + strand, within AO353_15665 at 3464.872 kb on + strand, within AO353_15665 at 3464.873 kb on - strand, within AO353_15665 at 3464.873 kb on - strand, within AO353_15665 at 3464.958 kb on + strand, within AO353_15665 at 3464.958 kb on + strand, within AO353_15665 at 3464.958 kb on + strand, within AO353_15665 at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.121 kb on + strand at 3465.122 kb on - strand at 3465.122 kb on - strand at 3465.122 kb on - strand at 3465.122 kb on - strand at 3465.122 kb on - strand at 3465.122 kb on - strand at 3465.122 kb on - strand at 3465.122 kb on - strand at 3465.148 kb on + strand at 3465.417 kb on - strand, within AO353_15670 at 3465.452 kb on + strand, within AO353_15670 at 3465.452 kb on + strand, within AO353_15670 at 3465.781 kb on + strand, within AO353_15670 at 3465.782 kb on - strand, within AO353_15670 at 3465.782 kb on - strand, within AO353_15670 at 3465.992 kb on + strand, within AO353_15670 at 3466.044 kb on - strand, within AO353_15670 at 3466.106 kb on + strand, within AO353_15670 at 3466.106 kb on + strand, within AO353_15670 at 3466.106 kb on + strand, within AO353_15670 at 3466.106 kb on + strand, within AO353_15670 at 3466.106 kb on + strand, within AO353_15670 at 3466.106 kb on + strand, within AO353_15670 at 3466.107 kb on - strand, within AO353_15670 at 3466.107 kb on - strand, within AO353_15670 at 3466.107 kb on - strand, within AO353_15670 at 3466.107 kb on - strand, within AO353_15670 at 3466.107 kb on - strand, within AO353_15670 at 3466.165 kb on - strand, within AO353_15670 at 3466.199 kb on + strand, within AO353_15670 at 3466.199 kb on + strand, within AO353_15670 at 3466.199 kb on + strand, within AO353_15670 at 3466.199 kb on + strand, within AO353_15670 at 3466.199 kb on + strand, within AO353_15670 at 3466.199 kb on + strand, within AO353_15670 at 3466.199 kb on + strand, within AO353_15670 at 3466.199 kb on + strand, within AO353_15670 at 3466.200 kb on - strand, within AO353_15670 at 3466.200 kb on - strand, within AO353_15670 at 3466.200 kb on - strand, within AO353_15670 at 3466.200 kb on - strand, within AO353_15670 at 3466.200 kb on - strand, within AO353_15670 at 3466.200 kb on - strand, within AO353_15670 at 3466.200 kb on - strand, within AO353_15670 at 3466.200 kb on - strand, within AO353_15670 at 3466.246 kb on + strand, within AO353_15670 at 3466.383 kb on - strand at 3466.393 kb on + strand at 3466.393 kb on + strand at 3466.393 kb on + strand at 3466.393 kb on + strand at 3466.393 kb on + strand at 3466.393 kb on + strand at 3466.393 kb on + strand at 3466.393 kb on + strand at 3466.393 kb on + strand at 3466.394 kb on - strand at 3466.433 kb on + strand at 3466.549 kb on + strand at 3466.549 kb on + strand at 3466.550 kb on - strand at 3466.643 kb on - strand at 3466.665 kb on + strand at 3466.665 kb on + strand at 3466.665 kb on + strand at 3466.665 kb on + strand at 3466.665 kb on + strand at 3466.666 kb on - strand at 3466.666 kb on - strand at 3466.666 kb on - strand at 3466.666 kb on - strand at 3466.666 kb on - strand at 3466.909 kb on + strand, within AO353_15675 at 3466.909 kb on + strand, within AO353_15675 at 3466.910 kb on - strand, within AO353_15675 at 3466.910 kb on - strand, within AO353_15675 at 3466.910 kb on - strand, within AO353_15675 at 3466.910 kb on - strand, within AO353_15675 at 3466.910 kb on - strand, within AO353_15675 at 3466.910 kb on - strand, within AO353_15675 at 3466.951 kb on + strand, within AO353_15675 at 3466.951 kb on + strand, within AO353_15675 at 3466.951 kb on + strand, within AO353_15675 at 3466.951 kb on + strand, within AO353_15675 at 3466.951 kb on + strand, within AO353_15675 at 3466.951 kb on + strand, within AO353_15675 at 3466.951 kb on + strand, within AO353_15675 at 3466.951 kb on + strand, within AO353_15675 at 3466.951 kb on + strand, within AO353_15675 at 3466.952 kb on - strand, within AO353_15675 at 3466.952 kb on - strand, within AO353_15675 at 3466.952 kb on - strand, within AO353_15675 at 3466.952 kb on - strand, within AO353_15675 at 3466.952 kb on - strand, within AO353_15675 at 3466.952 kb on - strand, within AO353_15675 at 3466.952 kb on - strand, within AO353_15675 at 3466.952 kb on - strand, within AO353_15675 at 3466.952 kb on - strand, within AO353_15675 at 3466.952 kb on - strand, within AO353_15675 at 3466.952 kb on - strand, within AO353_15675 at 3467.078 kb on + strand, within AO353_15675 at 3467.078 kb on + strand, within AO353_15675 at 3467.079 kb on - strand, within AO353_15675 at 3467.079 kb on - strand, within AO353_15675 at 3467.128 kb on - strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.158 kb on + strand, within AO353_15675 at 3467.159 kb on - strand, within AO353_15675 at 3467.159 kb on - strand, within AO353_15675 at 3467.159 kb on - strand, within AO353_15675 at 3467.159 kb on - strand, within AO353_15675 at 3467.159 kb on - strand, within AO353_15675 at 3467.159 kb on - strand, within AO353_15675 at 3467.159 kb on - strand, within AO353_15675 at 3467.159 kb on - strand, within AO353_15675 at 3467.159 kb on - strand, within AO353_15675 at 3467.159 kb on - strand, within AO353_15675 at 3467.159 kb on - strand, within AO353_15675 at 3467.161 kb on - strand, within AO353_15675 at 3467.193 kb on + strand, within AO353_15675 at 3467.373 kb on + strand, within AO353_15675 at 3467.373 kb on + strand, within AO353_15675 at 3467.373 kb on + strand, within AO353_15675 at 3467.374 kb on - strand, within AO353_15675 at 3467.374 kb on - strand, within AO353_15675
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 3,464,154 + -1.1 3,464,154 + -1.7 3,464,154 + -1.1 3,464,154 + +1.5 3,464,155 - -0.4 3,464,155 - +2.9 3,464,155 - +1.6 3,464,155 - +1.7 3,464,232 - -0.0 3,464,232 - +2.7 3,464,263 + -1.2 3,464,263 + -0.6 3,464,263 + -0.4 3,464,263 + -0.4 3,464,263 + -0.4 3,464,263 + +1.2 3,464,263 + -1.3 3,464,263 + +0.8 3,464,263 + -1.3 3,464,263 + -1.4 3,464,263 + +1.8 3,464,264 - +2.3 3,464,264 - +3.2 3,464,264 - +4.7 3,464,264 - +3.1 3,464,264 - +3.3 3,464,264 - +4.0 3,464,264 - +4.0 3,464,264 - +2.8 3,464,264 - +4.8 3,464,264 - +4.4 3,464,264 - +4.2 3,464,264 - +1.1 3,464,264 - +2.3 3,464,264 - +3.7 3,464,265 + +1.5 3,464,265 + -0.3 3,464,265 + -0.1 3,464,266 - +4.5 3,464,266 - +4.9 3,464,290 + +0.2 3,464,290 + +1.1 3,464,290 + -1.9 3,464,290 + -0.7 3,464,290 + -0.6 3,464,291 - +1.7 3,464,291 - +2.7 3,464,291 - +1.4 3,464,291 - +1.9 3,464,291 - +5.0 3,464,291 - +1.6 3,464,291 - +3.6 3,464,291 - +3.4 3,464,291 - +5.9 3,464,313 + -1.1 3,464,313 + +0.0 3,464,313 + +0.8 3,464,313 + +0.2 3,464,313 + -0.6 3,464,313 + +0.5 3,464,314 - +4.2 3,464,314 - +2.3 3,464,314 - +3.1 3,464,314 - +2.8 3,464,314 - +5.9 3,464,314 - +4.4 3,464,403 + AO353_15665 0.11 +1.0 3,464,619 + AO353_15665 0.41 +0.7 3,464,620 - AO353_15665 0.41 +0.8 3,464,872 + AO353_15665 0.77 -0.9 3,464,872 + AO353_15665 0.77 +1.8 3,464,873 - AO353_15665 0.77 -1.4 3,464,873 - AO353_15665 0.77 +0.4 3,464,958 + AO353_15665 0.89 +0.3 3,464,958 + AO353_15665 0.89 +0.4 3,464,958 + AO353_15665 0.89 +1.4 3,465,121 + +1.5 3,465,121 + +1.0 3,465,121 + -1.3 3,465,121 + -0.9 3,465,121 + +2.4 3,465,121 + -1.9 3,465,121 + +0.1 3,465,121 + -0.1 3,465,121 + -0.7 3,465,121 + -1.0 3,465,121 + +1.0 3,465,121 + -0.6 3,465,121 + -1.3 3,465,121 + +1.3 3,465,121 + +0.1 3,465,121 + -1.6 3,465,121 + -0.8 3,465,122 - -0.8 3,465,122 - -0.8 3,465,122 - +0.7 3,465,122 - +0.6 3,465,122 - -1.9 3,465,122 - +0.1 3,465,122 - -0.8 3,465,122 - +0.4 3,465,148 + -0.1 3,465,417 - AO353_15670 0.28 +0.2 3,465,452 + AO353_15670 0.30 -0.4 3,465,452 + AO353_15670 0.30 +0.4 3,465,781 + AO353_15670 0.55 -0.8 3,465,782 - AO353_15670 0.55 +0.4 3,465,782 - AO353_15670 0.55 +0.1 3,465,992 + AO353_15670 0.71 +1.1 3,466,044 - AO353_15670 0.75 -0.3 3,466,106 + AO353_15670 0.79 -0.8 3,466,106 + AO353_15670 0.79 +2.3 3,466,106 + AO353_15670 0.79 +1.1 3,466,106 + AO353_15670 0.79 +0.5 3,466,106 + AO353_15670 0.79 -0.7 3,466,106 + AO353_15670 0.79 +1.1 3,466,107 - AO353_15670 0.79 -1.8 3,466,107 - AO353_15670 0.79 -0.2 3,466,107 - AO353_15670 0.79 -0.5 3,466,107 - AO353_15670 0.79 +0.7 3,466,107 - AO353_15670 0.79 -0.4 3,466,165 - AO353_15670 0.84 +0.6 3,466,199 + AO353_15670 0.86 +4.3 3,466,199 + AO353_15670 0.86 +0.9 3,466,199 + AO353_15670 0.86 +2.2 3,466,199 + AO353_15670 0.86 +4.1 3,466,199 + AO353_15670 0.86 +4.6 3,466,199 + AO353_15670 0.86 +3.7 3,466,199 + AO353_15670 0.86 -0.4 3,466,199 + AO353_15670 0.86 +2.0 3,466,200 - AO353_15670 0.86 -0.9 3,466,200 - AO353_15670 0.86 +0.6 3,466,200 - AO353_15670 0.86 +1.6 3,466,200 - AO353_15670 0.86 +0.9 3,466,200 - AO353_15670 0.86 +1.4 3,466,200 - AO353_15670 0.86 +2.3 3,466,200 - AO353_15670 0.86 +0.4 3,466,200 - AO353_15670 0.86 +0.3 3,466,246 + AO353_15670 0.90 -0.4 3,466,383 - +0.6 3,466,393 + -0.9 3,466,393 + -0.4 3,466,393 + -0.6 3,466,393 + +0.1 3,466,393 + -0.3 3,466,393 + +0.1 3,466,393 + -0.9 3,466,393 + -1.7 3,466,393 + +0.8 3,466,394 - -1.1 3,466,433 + +0.9 3,466,549 + +0.5 3,466,549 + +0.4 3,466,550 - -1.5 3,466,643 - +0.3 3,466,665 + +0.8 3,466,665 + +0.4 3,466,665 + -1.1 3,466,665 + -0.6 3,466,665 + +0.4 3,466,666 - +3.7 3,466,666 - +0.7 3,466,666 - -1.3 3,466,666 - -0.9 3,466,666 - +4.0 3,466,909 + AO353_15675 0.13 +1.2 3,466,909 + AO353_15675 0.13 +0.1 3,466,910 - AO353_15675 0.13 -0.6 3,466,910 - AO353_15675 0.13 -0.2 3,466,910 - AO353_15675 0.13 -0.3 3,466,910 - AO353_15675 0.13 -0.9 3,466,910 - AO353_15675 0.13 +1.8 3,466,910 - AO353_15675 0.13 -0.2 3,466,951 + AO353_15675 0.17 -0.9 3,466,951 + AO353_15675 0.17 -0.0 3,466,951 + AO353_15675 0.17 -0.3 3,466,951 + AO353_15675 0.17 +0.7 3,466,951 + AO353_15675 0.17 -0.7 3,466,951 + AO353_15675 0.17 -0.9 3,466,951 + AO353_15675 0.17 -1.7 3,466,951 + AO353_15675 0.17 -1.4 3,466,951 + AO353_15675 0.17 -0.5 3,466,952 - AO353_15675 0.17 +1.1 3,466,952 - AO353_15675 0.17 -0.3 3,466,952 - AO353_15675 0.17 -2.0 3,466,952 - AO353_15675 0.17 +0.6 3,466,952 - AO353_15675 0.17 -0.7 3,466,952 - AO353_15675 0.17 +0.4 3,466,952 - AO353_15675 0.17 +0.1 3,466,952 - AO353_15675 0.17 +0.8 3,466,952 - AO353_15675 0.17 +0.7 3,466,952 - AO353_15675 0.17 -0.1 3,466,952 - AO353_15675 0.17 +0.1 3,467,078 + AO353_15675 0.29 -0.3 3,467,078 + AO353_15675 0.29 -0.2 3,467,079 - AO353_15675 0.29 +1.2 3,467,079 - AO353_15675 0.29 -2.3 3,467,128 - AO353_15675 0.34 +1.1 3,467,158 + AO353_15675 0.37 -0.5 3,467,158 + AO353_15675 0.37 +0.2 3,467,158 + AO353_15675 0.37 +1.0 3,467,158 + AO353_15675 0.37 -1.8 3,467,158 + AO353_15675 0.37 +0.7 3,467,158 + AO353_15675 0.37 -0.2 3,467,158 + AO353_15675 0.37 -0.4 3,467,158 + AO353_15675 0.37 +1.4 3,467,158 + AO353_15675 0.37 -1.1 3,467,158 + AO353_15675 0.37 -1.4 3,467,158 + AO353_15675 0.37 -0.3 3,467,158 + AO353_15675 0.37 +1.2 3,467,158 + AO353_15675 0.37 +0.2 3,467,158 + AO353_15675 0.37 -0.2 3,467,158 + AO353_15675 0.37 -0.8 3,467,158 + AO353_15675 0.37 +0.9 3,467,158 + AO353_15675 0.37 -0.6 3,467,158 + AO353_15675 0.37 -0.7 3,467,159 - AO353_15675 0.37 -0.6 3,467,159 - AO353_15675 0.37 +2.2 3,467,159 - AO353_15675 0.37 +0.6 3,467,159 - AO353_15675 0.37 +1.1 3,467,159 - AO353_15675 0.37 -0.6 3,467,159 - AO353_15675 0.37 -0.6 3,467,159 - AO353_15675 0.37 -1.8 3,467,159 - AO353_15675 0.37 +1.4 3,467,159 - AO353_15675 0.37 +1.6 3,467,159 - AO353_15675 0.37 -0.2 3,467,159 - AO353_15675 0.37 -0.6 3,467,161 - AO353_15675 0.38 +0.3 3,467,193 + AO353_15675 0.41 -0.6 3,467,373 + AO353_15675 0.59 +0.1 3,467,373 + AO353_15675 0.59 -1.3 3,467,373 + AO353_15675 0.59 -0.1 3,467,374 - AO353_15675 0.59 +0.2 3,467,374 - AO353_15675 0.59 +0.6
Or see this region's nucleotide sequence