Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_15670

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_15660 and AO353_15665 are separated by 199 nucleotidesAO353_15665 and AO353_15670 are separated by 8 nucleotidesAO353_15670 and AO353_15675 are separated by 398 nucleotides AO353_15660: AO353_15660 - hypothetical protein, at 3,463,886 to 3,464,128 _15660 AO353_15665: AO353_15665 - chemotaxis protein CheY, at 3,464,328 to 3,465,038 _15665 AO353_15670: AO353_15670 - histidine kinase, at 3,465,047 to 3,466,384 _15670 AO353_15675: AO353_15675 - hypothetical protein, at 3,466,783 to 3,467,787 _15675 Position (kb) 3465 3466 3467Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 3464.154 kb on + strandat 3464.154 kb on + strandat 3464.154 kb on + strandat 3464.154 kb on + strandat 3464.155 kb on - strandat 3464.155 kb on - strandat 3464.155 kb on - strandat 3464.155 kb on - strandat 3464.232 kb on - strandat 3464.232 kb on - strandat 3464.263 kb on + strandat 3464.263 kb on + strandat 3464.263 kb on + strandat 3464.263 kb on + strandat 3464.263 kb on + strandat 3464.263 kb on + strandat 3464.263 kb on + strandat 3464.263 kb on + strandat 3464.263 kb on + strandat 3464.263 kb on + strandat 3464.263 kb on + strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.264 kb on - strandat 3464.265 kb on + strandat 3464.265 kb on + strandat 3464.265 kb on + strandat 3464.266 kb on - strandat 3464.266 kb on - strandat 3464.290 kb on + strandat 3464.290 kb on + strandat 3464.290 kb on + strandat 3464.290 kb on + strandat 3464.290 kb on + strandat 3464.291 kb on - strandat 3464.291 kb on - strandat 3464.291 kb on - strandat 3464.291 kb on - strandat 3464.291 kb on - strandat 3464.291 kb on - strandat 3464.291 kb on - strandat 3464.291 kb on - strandat 3464.291 kb on - strandat 3464.313 kb on + strandat 3464.313 kb on + strandat 3464.313 kb on + strandat 3464.313 kb on + strandat 3464.313 kb on + strandat 3464.313 kb on + strandat 3464.314 kb on - strandat 3464.314 kb on - strandat 3464.314 kb on - strandat 3464.314 kb on - strandat 3464.314 kb on - strandat 3464.314 kb on - strandat 3464.403 kb on + strand, within AO353_15665at 3464.619 kb on + strand, within AO353_15665at 3464.620 kb on - strand, within AO353_15665at 3464.872 kb on + strand, within AO353_15665at 3464.872 kb on + strand, within AO353_15665at 3464.873 kb on - strand, within AO353_15665at 3464.873 kb on - strand, within AO353_15665at 3464.958 kb on + strand, within AO353_15665at 3464.958 kb on + strand, within AO353_15665at 3464.958 kb on + strand, within AO353_15665at 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.121 kb on + strandat 3465.122 kb on - strandat 3465.122 kb on - strandat 3465.122 kb on - strandat 3465.122 kb on - strandat 3465.122 kb on - strandat 3465.122 kb on - strandat 3465.122 kb on - strandat 3465.122 kb on - strandat 3465.148 kb on + strandat 3465.417 kb on - strand, within AO353_15670at 3465.452 kb on + strand, within AO353_15670at 3465.452 kb on + strand, within AO353_15670at 3465.781 kb on + strand, within AO353_15670at 3465.782 kb on - strand, within AO353_15670at 3465.782 kb on - strand, within AO353_15670at 3465.992 kb on + strand, within AO353_15670at 3466.044 kb on - strand, within AO353_15670at 3466.106 kb on + strand, within AO353_15670at 3466.106 kb on + strand, within AO353_15670at 3466.106 kb on + strand, within AO353_15670at 3466.106 kb on + strand, within AO353_15670at 3466.106 kb on + strand, within AO353_15670at 3466.106 kb on + strand, within AO353_15670at 3466.107 kb on - strand, within AO353_15670at 3466.107 kb on - strand, within AO353_15670at 3466.107 kb on - strand, within AO353_15670at 3466.107 kb on - strand, within AO353_15670at 3466.107 kb on - strand, within AO353_15670at 3466.165 kb on - strand, within AO353_15670at 3466.199 kb on + strand, within AO353_15670at 3466.199 kb on + strand, within AO353_15670at 3466.199 kb on + strand, within AO353_15670at 3466.199 kb on + strand, within AO353_15670at 3466.199 kb on + strand, within AO353_15670at 3466.199 kb on + strand, within AO353_15670at 3466.199 kb on + strand, within AO353_15670at 3466.199 kb on + strand, within AO353_15670at 3466.200 kb on - strand, within AO353_15670at 3466.200 kb on - strand, within AO353_15670at 3466.200 kb on - strand, within AO353_15670at 3466.200 kb on - strand, within AO353_15670at 3466.200 kb on - strand, within AO353_15670at 3466.200 kb on - strand, within AO353_15670at 3466.200 kb on - strand, within AO353_15670at 3466.200 kb on - strand, within AO353_15670at 3466.246 kb on + strand, within AO353_15670at 3466.383 kb on - strandat 3466.393 kb on + strandat 3466.393 kb on + strandat 3466.393 kb on + strandat 3466.393 kb on + strandat 3466.393 kb on + strandat 3466.393 kb on + strandat 3466.393 kb on + strandat 3466.393 kb on + strandat 3466.393 kb on + strandat 3466.394 kb on - strandat 3466.433 kb on + strandat 3466.549 kb on + strandat 3466.549 kb on + strandat 3466.550 kb on - strandat 3466.643 kb on - strandat 3466.665 kb on + strandat 3466.665 kb on + strandat 3466.665 kb on + strandat 3466.665 kb on + strandat 3466.665 kb on + strandat 3466.666 kb on - strandat 3466.666 kb on - strandat 3466.666 kb on - strandat 3466.666 kb on - strandat 3466.666 kb on - strandat 3466.909 kb on + strand, within AO353_15675at 3466.909 kb on + strand, within AO353_15675at 3466.910 kb on - strand, within AO353_15675at 3466.910 kb on - strand, within AO353_15675at 3466.910 kb on - strand, within AO353_15675at 3466.910 kb on - strand, within AO353_15675at 3466.910 kb on - strand, within AO353_15675at 3466.910 kb on - strand, within AO353_15675at 3466.951 kb on + strand, within AO353_15675at 3466.951 kb on + strand, within AO353_15675at 3466.951 kb on + strand, within AO353_15675at 3466.951 kb on + strand, within AO353_15675at 3466.951 kb on + strand, within AO353_15675at 3466.951 kb on + strand, within AO353_15675at 3466.951 kb on + strand, within AO353_15675at 3466.951 kb on + strand, within AO353_15675at 3466.951 kb on + strand, within AO353_15675at 3466.952 kb on - strand, within AO353_15675at 3466.952 kb on - strand, within AO353_15675at 3466.952 kb on - strand, within AO353_15675at 3466.952 kb on - strand, within AO353_15675at 3466.952 kb on - strand, within AO353_15675at 3466.952 kb on - strand, within AO353_15675at 3466.952 kb on - strand, within AO353_15675at 3466.952 kb on - strand, within AO353_15675at 3466.952 kb on - strand, within AO353_15675at 3466.952 kb on - strand, within AO353_15675at 3466.952 kb on - strand, within AO353_15675at 3467.078 kb on + strand, within AO353_15675at 3467.078 kb on + strand, within AO353_15675at 3467.079 kb on - strand, within AO353_15675at 3467.079 kb on - strand, within AO353_15675at 3467.128 kb on - strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.158 kb on + strand, within AO353_15675at 3467.159 kb on - strand, within AO353_15675at 3467.159 kb on - strand, within AO353_15675at 3467.159 kb on - strand, within AO353_15675at 3467.159 kb on - strand, within AO353_15675at 3467.159 kb on - strand, within AO353_15675at 3467.159 kb on - strand, within AO353_15675at 3467.159 kb on - strand, within AO353_15675at 3467.159 kb on - strand, within AO353_15675at 3467.159 kb on - strand, within AO353_15675at 3467.159 kb on - strand, within AO353_15675at 3467.159 kb on - strand, within AO353_15675at 3467.161 kb on - strand, within AO353_15675at 3467.193 kb on + strand, within AO353_15675at 3467.373 kb on + strand, within AO353_15675at 3467.373 kb on + strand, within AO353_15675at 3467.373 kb on + strand, within AO353_15675at 3467.374 kb on - strand, within AO353_15675at 3467.374 kb on - strand, within AO353_15675

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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3,464,154 + -1.1
3,464,154 + -1.7
3,464,154 + -1.1
3,464,154 + +1.5
3,464,155 - -0.4
3,464,155 - +2.9
3,464,155 - +1.6
3,464,155 - +1.7
3,464,232 - -0.0
3,464,232 - +2.7
3,464,263 + -1.2
3,464,263 + -0.6
3,464,263 + -0.4
3,464,263 + -0.4
3,464,263 + -0.4
3,464,263 + +1.2
3,464,263 + -1.3
3,464,263 + +0.8
3,464,263 + -1.3
3,464,263 + -1.4
3,464,263 + +1.8
3,464,264 - +2.3
3,464,264 - +3.2
3,464,264 - +4.7
3,464,264 - +3.1
3,464,264 - +3.3
3,464,264 - +4.0
3,464,264 - +4.0
3,464,264 - +2.8
3,464,264 - +4.8
3,464,264 - +4.4
3,464,264 - +4.2
3,464,264 - +1.1
3,464,264 - +2.3
3,464,264 - +3.7
3,464,265 + +1.5
3,464,265 + -0.3
3,464,265 + -0.1
3,464,266 - +4.5
3,464,266 - +4.9
3,464,290 + +0.2
3,464,290 + +1.1
3,464,290 + -1.9
3,464,290 + -0.7
3,464,290 + -0.6
3,464,291 - +1.7
3,464,291 - +2.7
3,464,291 - +1.4
3,464,291 - +1.9
3,464,291 - +5.0
3,464,291 - +1.6
3,464,291 - +3.6
3,464,291 - +3.4
3,464,291 - +5.9
3,464,313 + -1.1
3,464,313 + +0.0
3,464,313 + +0.8
3,464,313 + +0.2
3,464,313 + -0.6
3,464,313 + +0.5
3,464,314 - +4.2
3,464,314 - +2.3
3,464,314 - +3.1
3,464,314 - +2.8
3,464,314 - +5.9
3,464,314 - +4.4
3,464,403 + AO353_15665 0.11 +1.0
3,464,619 + AO353_15665 0.41 +0.7
3,464,620 - AO353_15665 0.41 +0.8
3,464,872 + AO353_15665 0.77 -0.9
3,464,872 + AO353_15665 0.77 +1.8
3,464,873 - AO353_15665 0.77 -1.4
3,464,873 - AO353_15665 0.77 +0.4
3,464,958 + AO353_15665 0.89 +0.3
3,464,958 + AO353_15665 0.89 +0.4
3,464,958 + AO353_15665 0.89 +1.4
3,465,121 + +1.5
3,465,121 + +1.0
3,465,121 + -1.3
3,465,121 + -0.9
3,465,121 + +2.4
3,465,121 + -1.9
3,465,121 + +0.1
3,465,121 + -0.1
3,465,121 + -0.7
3,465,121 + -1.0
3,465,121 + +1.0
3,465,121 + -0.6
3,465,121 + -1.3
3,465,121 + +1.3
3,465,121 + +0.1
3,465,121 + -1.6
3,465,121 + -0.8
3,465,122 - -0.8
3,465,122 - -0.8
3,465,122 - +0.7
3,465,122 - +0.6
3,465,122 - -1.9
3,465,122 - +0.1
3,465,122 - -0.8
3,465,122 - +0.4
3,465,148 + -0.1
3,465,417 - AO353_15670 0.28 +0.2
3,465,452 + AO353_15670 0.30 -0.4
3,465,452 + AO353_15670 0.30 +0.4
3,465,781 + AO353_15670 0.55 -0.8
3,465,782 - AO353_15670 0.55 +0.4
3,465,782 - AO353_15670 0.55 +0.1
3,465,992 + AO353_15670 0.71 +1.1
3,466,044 - AO353_15670 0.75 -0.3
3,466,106 + AO353_15670 0.79 -0.8
3,466,106 + AO353_15670 0.79 +2.3
3,466,106 + AO353_15670 0.79 +1.1
3,466,106 + AO353_15670 0.79 +0.5
3,466,106 + AO353_15670 0.79 -0.7
3,466,106 + AO353_15670 0.79 +1.1
3,466,107 - AO353_15670 0.79 -1.8
3,466,107 - AO353_15670 0.79 -0.2
3,466,107 - AO353_15670 0.79 -0.5
3,466,107 - AO353_15670 0.79 +0.7
3,466,107 - AO353_15670 0.79 -0.4
3,466,165 - AO353_15670 0.84 +0.6
3,466,199 + AO353_15670 0.86 +4.3
3,466,199 + AO353_15670 0.86 +0.9
3,466,199 + AO353_15670 0.86 +2.2
3,466,199 + AO353_15670 0.86 +4.1
3,466,199 + AO353_15670 0.86 +4.6
3,466,199 + AO353_15670 0.86 +3.7
3,466,199 + AO353_15670 0.86 -0.4
3,466,199 + AO353_15670 0.86 +2.0
3,466,200 - AO353_15670 0.86 -0.9
3,466,200 - AO353_15670 0.86 +0.6
3,466,200 - AO353_15670 0.86 +1.6
3,466,200 - AO353_15670 0.86 +0.9
3,466,200 - AO353_15670 0.86 +1.4
3,466,200 - AO353_15670 0.86 +2.3
3,466,200 - AO353_15670 0.86 +0.4
3,466,200 - AO353_15670 0.86 +0.3
3,466,246 + AO353_15670 0.90 -0.4
3,466,383 - +0.6
3,466,393 + -0.9
3,466,393 + -0.4
3,466,393 + -0.6
3,466,393 + +0.1
3,466,393 + -0.3
3,466,393 + +0.1
3,466,393 + -0.9
3,466,393 + -1.7
3,466,393 + +0.8
3,466,394 - -1.1
3,466,433 + +0.9
3,466,549 + +0.5
3,466,549 + +0.4
3,466,550 - -1.5
3,466,643 - +0.3
3,466,665 + +0.8
3,466,665 + +0.4
3,466,665 + -1.1
3,466,665 + -0.6
3,466,665 + +0.4
3,466,666 - +3.7
3,466,666 - +0.7
3,466,666 - -1.3
3,466,666 - -0.9
3,466,666 - +4.0
3,466,909 + AO353_15675 0.13 +1.2
3,466,909 + AO353_15675 0.13 +0.1
3,466,910 - AO353_15675 0.13 -0.6
3,466,910 - AO353_15675 0.13 -0.2
3,466,910 - AO353_15675 0.13 -0.3
3,466,910 - AO353_15675 0.13 -0.9
3,466,910 - AO353_15675 0.13 +1.8
3,466,910 - AO353_15675 0.13 -0.2
3,466,951 + AO353_15675 0.17 -0.9
3,466,951 + AO353_15675 0.17 -0.0
3,466,951 + AO353_15675 0.17 -0.3
3,466,951 + AO353_15675 0.17 +0.7
3,466,951 + AO353_15675 0.17 -0.7
3,466,951 + AO353_15675 0.17 -0.9
3,466,951 + AO353_15675 0.17 -1.7
3,466,951 + AO353_15675 0.17 -1.4
3,466,951 + AO353_15675 0.17 -0.5
3,466,952 - AO353_15675 0.17 +1.1
3,466,952 - AO353_15675 0.17 -0.3
3,466,952 - AO353_15675 0.17 -2.0
3,466,952 - AO353_15675 0.17 +0.6
3,466,952 - AO353_15675 0.17 -0.7
3,466,952 - AO353_15675 0.17 +0.4
3,466,952 - AO353_15675 0.17 +0.1
3,466,952 - AO353_15675 0.17 +0.8
3,466,952 - AO353_15675 0.17 +0.7
3,466,952 - AO353_15675 0.17 -0.1
3,466,952 - AO353_15675 0.17 +0.1
3,467,078 + AO353_15675 0.29 -0.3
3,467,078 + AO353_15675 0.29 -0.2
3,467,079 - AO353_15675 0.29 +1.2
3,467,079 - AO353_15675 0.29 -2.3
3,467,128 - AO353_15675 0.34 +1.1
3,467,158 + AO353_15675 0.37 -0.5
3,467,158 + AO353_15675 0.37 +0.2
3,467,158 + AO353_15675 0.37 +1.0
3,467,158 + AO353_15675 0.37 -1.8
3,467,158 + AO353_15675 0.37 +0.7
3,467,158 + AO353_15675 0.37 -0.2
3,467,158 + AO353_15675 0.37 -0.4
3,467,158 + AO353_15675 0.37 +1.4
3,467,158 + AO353_15675 0.37 -1.1
3,467,158 + AO353_15675 0.37 -1.4
3,467,158 + AO353_15675 0.37 -0.3
3,467,158 + AO353_15675 0.37 +1.2
3,467,158 + AO353_15675 0.37 +0.2
3,467,158 + AO353_15675 0.37 -0.2
3,467,158 + AO353_15675 0.37 -0.8
3,467,158 + AO353_15675 0.37 +0.9
3,467,158 + AO353_15675 0.37 -0.6
3,467,158 + AO353_15675 0.37 -0.7
3,467,159 - AO353_15675 0.37 -0.6
3,467,159 - AO353_15675 0.37 +2.2
3,467,159 - AO353_15675 0.37 +0.6
3,467,159 - AO353_15675 0.37 +1.1
3,467,159 - AO353_15675 0.37 -0.6
3,467,159 - AO353_15675 0.37 -0.6
3,467,159 - AO353_15675 0.37 -1.8
3,467,159 - AO353_15675 0.37 +1.4
3,467,159 - AO353_15675 0.37 +1.6
3,467,159 - AO353_15675 0.37 -0.2
3,467,159 - AO353_15675 0.37 -0.6
3,467,161 - AO353_15675 0.38 +0.3
3,467,193 + AO353_15675 0.41 -0.6
3,467,373 + AO353_15675 0.59 +0.1
3,467,373 + AO353_15675 0.59 -1.3
3,467,373 + AO353_15675 0.59 -0.1
3,467,374 - AO353_15675 0.59 +0.2
3,467,374 - AO353_15675 0.59 +0.6

Or see this region's nucleotide sequence