Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_09660

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_09655 and AO353_09660 are separated by 18 nucleotidesAO353_09660 and AO353_09665 are separated by 235 nucleotidesAO353_09665 and AO353_09670 are separated by 115 nucleotides AO353_09655: AO353_09655 - type VI secretion protein ImpA, at 2,117,951 to 2,119,888 _09655 AO353_09660: AO353_09660 - hypothetical protein, at 2,119,907 to 2,120,341 _09660 AO353_09665: AO353_09665 - hypothetical protein, at 2,120,577 to 2,121,164 _09665 AO353_09670: AO353_09670 - hypothetical protein, at 2,121,280 to 2,121,879 _09670 Position (kb) 2119 2120 2121Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2119.637 kb on + strand, within AO353_09655at 2119.637 kb on + strand, within AO353_09655at 2119.637 kb on + strand, within AO353_09655at 2119.637 kb on + strand, within AO353_09655at 2119.637 kb on + strand, within AO353_09655at 2119.637 kb on + strand, within AO353_09655at 2119.637 kb on + strand, within AO353_09655at 2119.637 kb on + strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.638 kb on - strand, within AO353_09655at 2119.742 kb on + strandat 2119.742 kb on + strandat 2119.742 kb on + strandat 2119.742 kb on + strandat 2119.743 kb on - strandat 2119.743 kb on - strandat 2119.743 kb on - strandat 2119.743 kb on - strandat 2119.743 kb on - strandat 2119.743 kb on - strandat 2119.743 kb on - strandat 2119.743 kb on - strandat 2119.743 kb on - strandat 2119.887 kb on - strandat 2119.913 kb on + strandat 2119.957 kb on - strand, within AO353_09660at 2120.255 kb on + strand, within AO353_09660at 2120.256 kb on - strand, within AO353_09660at 2120.256 kb on - strand, within AO353_09660at 2120.256 kb on - strand, within AO353_09660at 2120.417 kb on + strandat 2120.417 kb on + strandat 2120.418 kb on - strandat 2120.444 kb on + strandat 2120.444 kb on + strandat 2120.444 kb on + strandat 2120.445 kb on - strandat 2120.445 kb on - strandat 2120.445 kb on - strandat 2120.445 kb on - strandat 2120.456 kb on + strandat 2120.462 kb on + strandat 2120.462 kb on + strandat 2120.462 kb on + strandat 2120.464 kb on + strandat 2120.464 kb on + strandat 2120.464 kb on + strandat 2120.464 kb on + strandat 2120.464 kb on + strandat 2120.464 kb on + strandat 2120.465 kb on - strandat 2120.465 kb on - strandat 2120.465 kb on - strandat 2120.465 kb on - strandat 2120.465 kb on - strandat 2120.465 kb on - strandat 2120.465 kb on - strandat 2120.514 kb on - strandat 2120.550 kb on + strandat 2120.553 kb on + strandat 2120.553 kb on + strandat 2120.553 kb on + strandat 2120.554 kb on - strandat 2120.554 kb on - strandat 2120.554 kb on - strandat 2120.556 kb on + strandat 2120.556 kb on + strandat 2120.556 kb on + strandat 2120.556 kb on + strandat 2120.556 kb on + strandat 2120.556 kb on + strandat 2120.557 kb on - strandat 2120.557 kb on - strandat 2120.557 kb on - strandat 2120.557 kb on - strandat 2120.559 kb on + strandat 2120.559 kb on + strandat 2120.560 kb on - strandat 2120.560 kb on - strandat 2120.590 kb on + strandat 2120.611 kb on + strandat 2120.612 kb on - strandat 2120.638 kb on + strand, within AO353_09665at 2120.638 kb on + strand, within AO353_09665at 2120.638 kb on + strand, within AO353_09665at 2120.638 kb on + strand, within AO353_09665at 2120.638 kb on + strand, within AO353_09665at 2120.638 kb on + strand, within AO353_09665at 2120.638 kb on + strand, within AO353_09665at 2120.638 kb on + strand, within AO353_09665at 2120.638 kb on + strand, within AO353_09665at 2120.638 kb on + strand, within AO353_09665at 2120.638 kb on + strand, within AO353_09665at 2120.638 kb on + strand, within AO353_09665at 2120.639 kb on - strand, within AO353_09665at 2120.639 kb on - strand, within AO353_09665at 2120.639 kb on - strand, within AO353_09665at 2120.639 kb on - strand, within AO353_09665at 2120.639 kb on - strand, within AO353_09665at 2120.639 kb on - strand, within AO353_09665at 2120.639 kb on - strand, within AO353_09665at 2120.640 kb on + strand, within AO353_09665at 2120.640 kb on + strand, within AO353_09665at 2120.640 kb on + strand, within AO353_09665at 2120.641 kb on - strand, within AO353_09665at 2120.642 kb on + strand, within AO353_09665at 2120.642 kb on + strand, within AO353_09665at 2120.642 kb on + strand, within AO353_09665at 2120.642 kb on + strand, within AO353_09665at 2120.642 kb on + strand, within AO353_09665at 2120.642 kb on + strand, within AO353_09665at 2120.643 kb on - strand, within AO353_09665at 2120.643 kb on - strand, within AO353_09665at 2120.643 kb on - strand, within AO353_09665at 2120.643 kb on - strand, within AO353_09665at 2120.643 kb on - strand, within AO353_09665at 2120.643 kb on - strand, within AO353_09665at 2120.643 kb on - strand, within AO353_09665at 2120.648 kb on - strand, within AO353_09665at 2120.648 kb on - strand, within AO353_09665at 2120.682 kb on + strand, within AO353_09665at 2120.683 kb on - strand, within AO353_09665at 2120.683 kb on - strand, within AO353_09665at 2120.846 kb on - strand, within AO353_09665at 2120.995 kb on - strand, within AO353_09665at 2121.003 kb on - strand, within AO353_09665at 2121.003 kb on - strand, within AO353_09665at 2121.066 kb on - strand, within AO353_09665at 2121.146 kb on - strandat 2121.151 kb on + strandat 2121.158 kb on - strandat 2121.177 kb on - strandat 2121.193 kb on + strandat 2121.201 kb on - strandat 2121.201 kb on - strandat 2121.201 kb on - strandat 2121.226 kb on - strandat 2121.242 kb on + strandat 2121.243 kb on - strandat 2121.243 kb on - strandat 2121.291 kb on - strandat 2121.303 kb on - strandat 2121.305 kb on + strandat 2121.306 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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2,119,637 + AO353_09655 0.87 -0.9
2,119,637 + AO353_09655 0.87 +0.4
2,119,637 + AO353_09655 0.87 -0.1
2,119,637 + AO353_09655 0.87 -0.5
2,119,637 + AO353_09655 0.87 +0.4
2,119,637 + AO353_09655 0.87 -2.4
2,119,637 + AO353_09655 0.87 -1.6
2,119,637 + AO353_09655 0.87 -0.9
2,119,638 - AO353_09655 0.87 -1.1
2,119,638 - AO353_09655 0.87 -0.1
2,119,638 - AO353_09655 0.87 -1.5
2,119,638 - AO353_09655 0.87 -0.8
2,119,638 - AO353_09655 0.87 -1.2
2,119,638 - AO353_09655 0.87 -1.3
2,119,638 - AO353_09655 0.87 -1.2
2,119,638 - AO353_09655 0.87 -0.9
2,119,638 - AO353_09655 0.87 +0.6
2,119,638 - AO353_09655 0.87 -2.2
2,119,638 - AO353_09655 0.87 +1.0
2,119,638 - AO353_09655 0.87 +0.2
2,119,638 - AO353_09655 0.87 -0.5
2,119,638 - AO353_09655 0.87 -1.1
2,119,638 - AO353_09655 0.87 -0.8
2,119,638 - AO353_09655 0.87 +0.7
2,119,638 - AO353_09655 0.87 +0.2
2,119,638 - AO353_09655 0.87 -1.2
2,119,638 - AO353_09655 0.87 -0.9
2,119,742 + +0.7
2,119,742 + +2.5
2,119,742 + -0.2
2,119,742 + +0.8
2,119,743 - -1.4
2,119,743 - +1.3
2,119,743 - +0.2
2,119,743 - -0.3
2,119,743 - -0.8
2,119,743 - -1.1
2,119,743 - -0.3
2,119,743 - -1.6
2,119,743 - +1.2
2,119,887 - -0.8
2,119,913 + -1.2
2,119,957 - AO353_09660 0.11 -0.3
2,120,255 + AO353_09660 0.80 -0.3
2,120,256 - AO353_09660 0.80 -1.7
2,120,256 - AO353_09660 0.80 +0.7
2,120,256 - AO353_09660 0.80 -2.3
2,120,417 + -0.5
2,120,417 + -0.5
2,120,418 - -0.7
2,120,444 + +2.9
2,120,444 + +2.5
2,120,444 + +0.6
2,120,445 - +0.4
2,120,445 - -1.1
2,120,445 - +0.5
2,120,445 - +0.2
2,120,456 + -1.3
2,120,462 + -1.3
2,120,462 + +0.4
2,120,462 + +0.1
2,120,464 + -0.7
2,120,464 + -0.4
2,120,464 + -1.9
2,120,464 + -1.8
2,120,464 + +0.6
2,120,464 + -1.5
2,120,465 - +0.7
2,120,465 - +1.2
2,120,465 - -2.7
2,120,465 - -0.3
2,120,465 - +0.7
2,120,465 - +1.5
2,120,465 - +0.9
2,120,514 - +1.1
2,120,550 + -1.6
2,120,553 + -1.6
2,120,553 + +0.5
2,120,553 + -0.7
2,120,554 - -1.1
2,120,554 - +2.2
2,120,554 - -0.9
2,120,556 + -0.1
2,120,556 + +0.3
2,120,556 + +0.4
2,120,556 + +0.0
2,120,556 + +1.8
2,120,556 + -1.9
2,120,557 - +0.5
2,120,557 - +0.0
2,120,557 - -0.5
2,120,557 - -0.3
2,120,559 + +0.0
2,120,559 + +0.8
2,120,560 - -1.9
2,120,560 - +2.2
2,120,590 + +1.1
2,120,611 + -0.7
2,120,612 - -0.3
2,120,638 + AO353_09665 0.10 -0.5
2,120,638 + AO353_09665 0.10 -0.0
2,120,638 + AO353_09665 0.10 +2.7
2,120,638 + AO353_09665 0.10 -1.0
2,120,638 + AO353_09665 0.10 +0.0
2,120,638 + AO353_09665 0.10 +0.5
2,120,638 + AO353_09665 0.10 -0.0
2,120,638 + AO353_09665 0.10 -0.1
2,120,638 + AO353_09665 0.10 +0.9
2,120,638 + AO353_09665 0.10 +0.7
2,120,638 + AO353_09665 0.10 -1.6
2,120,638 + AO353_09665 0.10 -1.1
2,120,639 - AO353_09665 0.11 -0.3
2,120,639 - AO353_09665 0.11 +1.7
2,120,639 - AO353_09665 0.11 +0.2
2,120,639 - AO353_09665 0.11 -0.1
2,120,639 - AO353_09665 0.11 -0.8
2,120,639 - AO353_09665 0.11 -0.9
2,120,639 - AO353_09665 0.11 -0.2
2,120,640 + AO353_09665 0.11 +2.5
2,120,640 + AO353_09665 0.11 -1.0
2,120,640 + AO353_09665 0.11 -0.6
2,120,641 - AO353_09665 0.11 -1.7
2,120,642 + AO353_09665 0.11 -0.9
2,120,642 + AO353_09665 0.11 +1.7
2,120,642 + AO353_09665 0.11 -0.5
2,120,642 + AO353_09665 0.11 -2.4
2,120,642 + AO353_09665 0.11 +0.7
2,120,642 + AO353_09665 0.11 -0.2
2,120,643 - AO353_09665 0.11 -1.3
2,120,643 - AO353_09665 0.11 -0.7
2,120,643 - AO353_09665 0.11 +1.0
2,120,643 - AO353_09665 0.11 +0.5
2,120,643 - AO353_09665 0.11 +0.8
2,120,643 - AO353_09665 0.11 +0.3
2,120,643 - AO353_09665 0.11 +1.4
2,120,648 - AO353_09665 0.12 -1.3
2,120,648 - AO353_09665 0.12 -0.4
2,120,682 + AO353_09665 0.18 -0.3
2,120,683 - AO353_09665 0.18 +2.1
2,120,683 - AO353_09665 0.18 -1.9
2,120,846 - AO353_09665 0.46 +1.5
2,120,995 - AO353_09665 0.71 -0.9
2,121,003 - AO353_09665 0.72 -0.3
2,121,003 - AO353_09665 0.72 -0.4
2,121,066 - AO353_09665 0.83 -0.2
2,121,146 - -0.8
2,121,151 + -1.1
2,121,158 - +0.5
2,121,177 - +1.1
2,121,193 + +0.9
2,121,201 - -0.3
2,121,201 - -2.4
2,121,201 - -1.3
2,121,226 - -2.1
2,121,242 + +1.8
2,121,243 - -2.1
2,121,243 - +1.3
2,121,291 - +1.2
2,121,303 - -0.6
2,121,305 + -0.6
2,121,306 - +0.5

Or see this region's nucleotide sequence