Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_09655 and AO353_09660 are separated by 18 nucleotides AO353_09660 and AO353_09665 are separated by 235 nucleotides AO353_09665 and AO353_09670 are separated by 115 nucleotides
AO353_09655: AO353_09655 - type VI secretion protein ImpA, at 2,117,951 to 2,119,888
_09655
AO353_09660: AO353_09660 - hypothetical protein, at 2,119,907 to 2,120,341
_09660
AO353_09665: AO353_09665 - hypothetical protein, at 2,120,577 to 2,121,164
_09665
AO353_09670: AO353_09670 - hypothetical protein, at 2,121,280 to 2,121,879
_09670
Position (kb)
2119
2120
2121 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2119.637 kb on + strand, within AO353_09655 at 2119.637 kb on + strand, within AO353_09655 at 2119.637 kb on + strand, within AO353_09655 at 2119.637 kb on + strand, within AO353_09655 at 2119.637 kb on + strand, within AO353_09655 at 2119.637 kb on + strand, within AO353_09655 at 2119.637 kb on + strand, within AO353_09655 at 2119.637 kb on + strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.638 kb on - strand, within AO353_09655 at 2119.742 kb on + strand at 2119.742 kb on + strand at 2119.742 kb on + strand at 2119.742 kb on + strand at 2119.743 kb on - strand at 2119.743 kb on - strand at 2119.743 kb on - strand at 2119.743 kb on - strand at 2119.743 kb on - strand at 2119.743 kb on - strand at 2119.743 kb on - strand at 2119.743 kb on - strand at 2119.743 kb on - strand at 2119.887 kb on - strand at 2119.913 kb on + strand at 2119.957 kb on - strand, within AO353_09660 at 2120.255 kb on + strand, within AO353_09660 at 2120.256 kb on - strand, within AO353_09660 at 2120.256 kb on - strand, within AO353_09660 at 2120.256 kb on - strand, within AO353_09660 at 2120.417 kb on + strand at 2120.417 kb on + strand at 2120.418 kb on - strand at 2120.444 kb on + strand at 2120.444 kb on + strand at 2120.444 kb on + strand at 2120.445 kb on - strand at 2120.445 kb on - strand at 2120.445 kb on - strand at 2120.445 kb on - strand at 2120.456 kb on + strand at 2120.462 kb on + strand at 2120.462 kb on + strand at 2120.462 kb on + strand at 2120.464 kb on + strand at 2120.464 kb on + strand at 2120.464 kb on + strand at 2120.464 kb on + strand at 2120.464 kb on + strand at 2120.464 kb on + strand at 2120.465 kb on - strand at 2120.465 kb on - strand at 2120.465 kb on - strand at 2120.465 kb on - strand at 2120.465 kb on - strand at 2120.465 kb on - strand at 2120.465 kb on - strand at 2120.514 kb on - strand at 2120.550 kb on + strand at 2120.553 kb on + strand at 2120.553 kb on + strand at 2120.553 kb on + strand at 2120.554 kb on - strand at 2120.554 kb on - strand at 2120.554 kb on - strand at 2120.556 kb on + strand at 2120.556 kb on + strand at 2120.556 kb on + strand at 2120.556 kb on + strand at 2120.556 kb on + strand at 2120.556 kb on + strand at 2120.557 kb on - strand at 2120.557 kb on - strand at 2120.557 kb on - strand at 2120.557 kb on - strand at 2120.559 kb on + strand at 2120.559 kb on + strand at 2120.560 kb on - strand at 2120.560 kb on - strand at 2120.590 kb on + strand at 2120.611 kb on + strand at 2120.612 kb on - strand at 2120.638 kb on + strand, within AO353_09665 at 2120.638 kb on + strand, within AO353_09665 at 2120.638 kb on + strand, within AO353_09665 at 2120.638 kb on + strand, within AO353_09665 at 2120.638 kb on + strand, within AO353_09665 at 2120.638 kb on + strand, within AO353_09665 at 2120.638 kb on + strand, within AO353_09665 at 2120.638 kb on + strand, within AO353_09665 at 2120.638 kb on + strand, within AO353_09665 at 2120.638 kb on + strand, within AO353_09665 at 2120.638 kb on + strand, within AO353_09665 at 2120.638 kb on + strand, within AO353_09665 at 2120.639 kb on - strand, within AO353_09665 at 2120.639 kb on - strand, within AO353_09665 at 2120.639 kb on - strand, within AO353_09665 at 2120.639 kb on - strand, within AO353_09665 at 2120.639 kb on - strand, within AO353_09665 at 2120.639 kb on - strand, within AO353_09665 at 2120.639 kb on - strand, within AO353_09665 at 2120.640 kb on + strand, within AO353_09665 at 2120.640 kb on + strand, within AO353_09665 at 2120.640 kb on + strand, within AO353_09665 at 2120.641 kb on - strand, within AO353_09665 at 2120.642 kb on + strand, within AO353_09665 at 2120.642 kb on + strand, within AO353_09665 at 2120.642 kb on + strand, within AO353_09665 at 2120.642 kb on + strand, within AO353_09665 at 2120.642 kb on + strand, within AO353_09665 at 2120.642 kb on + strand, within AO353_09665 at 2120.643 kb on - strand, within AO353_09665 at 2120.643 kb on - strand, within AO353_09665 at 2120.643 kb on - strand, within AO353_09665 at 2120.643 kb on - strand, within AO353_09665 at 2120.643 kb on - strand, within AO353_09665 at 2120.643 kb on - strand, within AO353_09665 at 2120.643 kb on - strand, within AO353_09665 at 2120.648 kb on - strand, within AO353_09665 at 2120.648 kb on - strand, within AO353_09665 at 2120.682 kb on + strand, within AO353_09665 at 2120.683 kb on - strand, within AO353_09665 at 2120.683 kb on - strand, within AO353_09665 at 2120.846 kb on - strand, within AO353_09665 at 2120.995 kb on - strand, within AO353_09665 at 2121.003 kb on - strand, within AO353_09665 at 2121.003 kb on - strand, within AO353_09665 at 2121.066 kb on - strand, within AO353_09665 at 2121.146 kb on - strand at 2121.151 kb on + strand at 2121.158 kb on - strand at 2121.177 kb on - strand at 2121.193 kb on + strand at 2121.201 kb on - strand at 2121.201 kb on - strand at 2121.201 kb on - strand at 2121.226 kb on - strand at 2121.242 kb on + strand at 2121.243 kb on - strand at 2121.243 kb on - strand at 2121.291 kb on - strand at 2121.303 kb on - strand at 2121.305 kb on + strand at 2121.306 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 2,119,637 + AO353_09655 0.87 -0.9 2,119,637 + AO353_09655 0.87 +0.4 2,119,637 + AO353_09655 0.87 -0.1 2,119,637 + AO353_09655 0.87 -0.5 2,119,637 + AO353_09655 0.87 +0.4 2,119,637 + AO353_09655 0.87 -2.4 2,119,637 + AO353_09655 0.87 -1.6 2,119,637 + AO353_09655 0.87 -0.9 2,119,638 - AO353_09655 0.87 -1.1 2,119,638 - AO353_09655 0.87 -0.1 2,119,638 - AO353_09655 0.87 -1.5 2,119,638 - AO353_09655 0.87 -0.8 2,119,638 - AO353_09655 0.87 -1.2 2,119,638 - AO353_09655 0.87 -1.3 2,119,638 - AO353_09655 0.87 -1.2 2,119,638 - AO353_09655 0.87 -0.9 2,119,638 - AO353_09655 0.87 +0.6 2,119,638 - AO353_09655 0.87 -2.2 2,119,638 - AO353_09655 0.87 +1.0 2,119,638 - AO353_09655 0.87 +0.2 2,119,638 - AO353_09655 0.87 -0.5 2,119,638 - AO353_09655 0.87 -1.1 2,119,638 - AO353_09655 0.87 -0.8 2,119,638 - AO353_09655 0.87 +0.7 2,119,638 - AO353_09655 0.87 +0.2 2,119,638 - AO353_09655 0.87 -1.2 2,119,638 - AO353_09655 0.87 -0.9 2,119,742 + +0.7 2,119,742 + +2.5 2,119,742 + -0.2 2,119,742 + +0.8 2,119,743 - -1.4 2,119,743 - +1.3 2,119,743 - +0.2 2,119,743 - -0.3 2,119,743 - -0.8 2,119,743 - -1.1 2,119,743 - -0.3 2,119,743 - -1.6 2,119,743 - +1.2 2,119,887 - -0.8 2,119,913 + -1.2 2,119,957 - AO353_09660 0.11 -0.3 2,120,255 + AO353_09660 0.80 -0.3 2,120,256 - AO353_09660 0.80 -1.7 2,120,256 - AO353_09660 0.80 +0.7 2,120,256 - AO353_09660 0.80 -2.3 2,120,417 + -0.5 2,120,417 + -0.5 2,120,418 - -0.7 2,120,444 + +2.9 2,120,444 + +2.5 2,120,444 + +0.6 2,120,445 - +0.4 2,120,445 - -1.1 2,120,445 - +0.5 2,120,445 - +0.2 2,120,456 + -1.3 2,120,462 + -1.3 2,120,462 + +0.4 2,120,462 + +0.1 2,120,464 + -0.7 2,120,464 + -0.4 2,120,464 + -1.9 2,120,464 + -1.8 2,120,464 + +0.6 2,120,464 + -1.5 2,120,465 - +0.7 2,120,465 - +1.2 2,120,465 - -2.7 2,120,465 - -0.3 2,120,465 - +0.7 2,120,465 - +1.5 2,120,465 - +0.9 2,120,514 - +1.1 2,120,550 + -1.6 2,120,553 + -1.6 2,120,553 + +0.5 2,120,553 + -0.7 2,120,554 - -1.1 2,120,554 - +2.2 2,120,554 - -0.9 2,120,556 + -0.1 2,120,556 + +0.3 2,120,556 + +0.4 2,120,556 + +0.0 2,120,556 + +1.8 2,120,556 + -1.9 2,120,557 - +0.5 2,120,557 - +0.0 2,120,557 - -0.5 2,120,557 - -0.3 2,120,559 + +0.0 2,120,559 + +0.8 2,120,560 - -1.9 2,120,560 - +2.2 2,120,590 + +1.1 2,120,611 + -0.7 2,120,612 - -0.3 2,120,638 + AO353_09665 0.10 -0.5 2,120,638 + AO353_09665 0.10 -0.0 2,120,638 + AO353_09665 0.10 +2.7 2,120,638 + AO353_09665 0.10 -1.0 2,120,638 + AO353_09665 0.10 +0.0 2,120,638 + AO353_09665 0.10 +0.5 2,120,638 + AO353_09665 0.10 -0.0 2,120,638 + AO353_09665 0.10 -0.1 2,120,638 + AO353_09665 0.10 +0.9 2,120,638 + AO353_09665 0.10 +0.7 2,120,638 + AO353_09665 0.10 -1.6 2,120,638 + AO353_09665 0.10 -1.1 2,120,639 - AO353_09665 0.11 -0.3 2,120,639 - AO353_09665 0.11 +1.7 2,120,639 - AO353_09665 0.11 +0.2 2,120,639 - AO353_09665 0.11 -0.1 2,120,639 - AO353_09665 0.11 -0.8 2,120,639 - AO353_09665 0.11 -0.9 2,120,639 - AO353_09665 0.11 -0.2 2,120,640 + AO353_09665 0.11 +2.5 2,120,640 + AO353_09665 0.11 -1.0 2,120,640 + AO353_09665 0.11 -0.6 2,120,641 - AO353_09665 0.11 -1.7 2,120,642 + AO353_09665 0.11 -0.9 2,120,642 + AO353_09665 0.11 +1.7 2,120,642 + AO353_09665 0.11 -0.5 2,120,642 + AO353_09665 0.11 -2.4 2,120,642 + AO353_09665 0.11 +0.7 2,120,642 + AO353_09665 0.11 -0.2 2,120,643 - AO353_09665 0.11 -1.3 2,120,643 - AO353_09665 0.11 -0.7 2,120,643 - AO353_09665 0.11 +1.0 2,120,643 - AO353_09665 0.11 +0.5 2,120,643 - AO353_09665 0.11 +0.8 2,120,643 - AO353_09665 0.11 +0.3 2,120,643 - AO353_09665 0.11 +1.4 2,120,648 - AO353_09665 0.12 -1.3 2,120,648 - AO353_09665 0.12 -0.4 2,120,682 + AO353_09665 0.18 -0.3 2,120,683 - AO353_09665 0.18 +2.1 2,120,683 - AO353_09665 0.18 -1.9 2,120,846 - AO353_09665 0.46 +1.5 2,120,995 - AO353_09665 0.71 -0.9 2,121,003 - AO353_09665 0.72 -0.3 2,121,003 - AO353_09665 0.72 -0.4 2,121,066 - AO353_09665 0.83 -0.2 2,121,146 - -0.8 2,121,151 + -1.1 2,121,158 - +0.5 2,121,177 - +1.1 2,121,193 + +0.9 2,121,201 - -0.3 2,121,201 - -2.4 2,121,201 - -1.3 2,121,226 - -2.1 2,121,242 + +1.8 2,121,243 - -2.1 2,121,243 - +1.3 2,121,291 - +1.2 2,121,303 - -0.6 2,121,305 + -0.6 2,121,306 - +0.5
Or see this region's nucleotide sequence