Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07925 and AO353_07930 are separated by 101 nucleotides
AO353_07925: AO353_07925 - beta-hydroxylase, at 1,747,803 to 1,748,627
_07925
AO353_07930: AO353_07930 - fructose-1,6-bisphosphate aldolase, at 1,748,729 to 1,749,793
_07930
Position (kb)
1747
1748
1749 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1746.811 kb on + strand at 1746.812 kb on - strand at 1746.835 kb on + strand at 1746.908 kb on + strand at 1746.922 kb on + strand at 1746.922 kb on + strand at 1746.923 kb on - strand at 1746.923 kb on - strand at 1746.932 kb on - strand at 1747.007 kb on - strand at 1747.007 kb on - strand at 1747.038 kb on + strand at 1747.104 kb on + strand at 1747.109 kb on - strand at 1747.109 kb on - strand at 1747.168 kb on - strand at 1747.286 kb on - strand at 1747.329 kb on + strand at 1747.332 kb on + strand at 1747.332 kb on + strand at 1747.332 kb on + strand at 1747.352 kb on + strand at 1747.353 kb on - strand at 1747.368 kb on - strand at 1747.368 kb on - strand at 1747.387 kb on - strand at 1747.468 kb on - strand at 1747.473 kb on + strand at 1747.473 kb on + strand at 1747.473 kb on + strand at 1747.473 kb on + strand at 1747.473 kb on + strand at 1747.473 kb on + strand at 1747.473 kb on + strand at 1747.473 kb on + strand at 1747.473 kb on + strand at 1747.473 kb on + strand at 1747.474 kb on - strand at 1747.474 kb on - strand at 1747.474 kb on - strand at 1747.474 kb on - strand at 1747.474 kb on - strand at 1747.474 kb on - strand at 1747.474 kb on - strand at 1747.480 kb on + strand at 1747.488 kb on - strand at 1747.619 kb on + strand at 1747.619 kb on + strand at 1747.619 kb on + strand at 1747.619 kb on + strand at 1747.619 kb on + strand at 1747.620 kb on - strand at 1747.620 kb on - strand at 1747.620 kb on - strand at 1747.620 kb on - strand at 1747.620 kb on - strand at 1747.620 kb on - strand at 1747.620 kb on - strand at 1747.620 kb on - strand at 1747.620 kb on - strand at 1747.704 kb on - strand at 1747.741 kb on - strand at 1747.743 kb on + strand at 1747.743 kb on + strand at 1747.755 kb on - strand at 1747.848 kb on - strand at 1747.869 kb on - strand at 1747.869 kb on - strand at 1747.929 kb on + strand, within AO353_07925 at 1747.929 kb on + strand, within AO353_07925 at 1747.985 kb on - strand, within AO353_07925 at 1748.000 kb on + strand, within AO353_07925 at 1748.064 kb on + strand, within AO353_07925 at 1748.109 kb on + strand, within AO353_07925 at 1748.208 kb on + strand, within AO353_07925 at 1748.209 kb on - strand, within AO353_07925 at 1748.265 kb on + strand, within AO353_07925 at 1748.265 kb on + strand, within AO353_07925 at 1748.266 kb on - strand, within AO353_07925 at 1748.266 kb on - strand, within AO353_07925 at 1748.267 kb on + strand, within AO353_07925 at 1748.267 kb on + strand, within AO353_07925 at 1748.267 kb on + strand, within AO353_07925 at 1748.267 kb on + strand, within AO353_07925 at 1748.267 kb on + strand, within AO353_07925 at 1748.267 kb on + strand, within AO353_07925 at 1748.267 kb on + strand, within AO353_07925 at 1748.267 kb on + strand, within AO353_07925 at 1748.267 kb on + strand, within AO353_07925 at 1748.267 kb on + strand, within AO353_07925 at 1748.268 kb on - strand, within AO353_07925 at 1748.268 kb on - strand, within AO353_07925 at 1748.268 kb on - strand, within AO353_07925 at 1748.268 kb on - strand, within AO353_07925 at 1748.268 kb on - strand, within AO353_07925 at 1748.268 kb on - strand, within AO353_07925 at 1748.269 kb on + strand, within AO353_07925 at 1748.269 kb on + strand, within AO353_07925 at 1748.269 kb on + strand, within AO353_07925 at 1748.269 kb on + strand, within AO353_07925 at 1748.270 kb on - strand, within AO353_07925 at 1748.343 kb on + strand, within AO353_07925 at 1748.343 kb on + strand, within AO353_07925 at 1748.343 kb on + strand, within AO353_07925 at 1748.344 kb on - strand, within AO353_07925 at 1748.356 kb on - strand, within AO353_07925 at 1748.356 kb on - strand, within AO353_07925 at 1748.391 kb on + strand, within AO353_07925 at 1748.391 kb on + strand, within AO353_07925 at 1748.391 kb on + strand, within AO353_07925 at 1748.391 kb on + strand, within AO353_07925 at 1748.392 kb on - strand, within AO353_07925 at 1748.392 kb on - strand, within AO353_07925 at 1748.392 kb on - strand, within AO353_07925 at 1748.418 kb on + strand, within AO353_07925 at 1748.419 kb on - strand, within AO353_07925 at 1748.515 kb on + strand, within AO353_07925 at 1748.515 kb on + strand, within AO353_07925 at 1748.515 kb on + strand, within AO353_07925 at 1748.515 kb on + strand, within AO353_07925 at 1748.515 kb on + strand, within AO353_07925 at 1748.515 kb on + strand, within AO353_07925 at 1748.516 kb on - strand, within AO353_07925 at 1748.516 kb on - strand, within AO353_07925 at 1748.516 kb on - strand, within AO353_07925 at 1748.516 kb on - strand, within AO353_07925 at 1748.541 kb on - strand, within AO353_07925 at 1748.619 kb on - strand at 1748.626 kb on - strand at 1748.626 kb on - strand at 1748.653 kb on + strand at 1748.730 kb on + strand at 1748.730 kb on + strand at 1748.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 1,746,811 + -1.9 1,746,812 - -1.1 1,746,835 + -0.9 1,746,908 + +0.3 1,746,922 + +1.6 1,746,922 + -1.2 1,746,923 - +0.2 1,746,923 - -0.0 1,746,932 - +2.0 1,747,007 - +1.3 1,747,007 - +0.1 1,747,038 + -0.6 1,747,104 + +0.1 1,747,109 - +0.9 1,747,109 - +1.6 1,747,168 - +0.8 1,747,286 - -1.9 1,747,329 + -0.7 1,747,332 + +1.2 1,747,332 + +0.5 1,747,332 + -1.6 1,747,352 + +1.0 1,747,353 - -1.0 1,747,368 - +0.5 1,747,368 - +2.5 1,747,387 - -0.9 1,747,468 - +1.1 1,747,473 + -1.7 1,747,473 + -1.5 1,747,473 + +0.8 1,747,473 + +1.3 1,747,473 + +0.1 1,747,473 + +0.9 1,747,473 + +0.8 1,747,473 + -1.5 1,747,473 + -0.1 1,747,473 + +0.7 1,747,474 - +1.0 1,747,474 - -0.4 1,747,474 - +2.2 1,747,474 - +1.9 1,747,474 - +1.7 1,747,474 - +0.7 1,747,474 - +1.8 1,747,480 + +1.2 1,747,488 - -0.4 1,747,619 + -0.9 1,747,619 + -0.9 1,747,619 + -1.0 1,747,619 + -0.9 1,747,619 + +0.1 1,747,620 - -2.5 1,747,620 - +0.5 1,747,620 - -1.9 1,747,620 - +0.1 1,747,620 - -0.4 1,747,620 - -0.3 1,747,620 - -0.8 1,747,620 - +0.1 1,747,620 - -1.6 1,747,704 - -1.6 1,747,741 - -0.1 1,747,743 + -0.8 1,747,743 + +1.3 1,747,755 - -1.7 1,747,848 - -1.6 1,747,869 - +0.1 1,747,869 - -0.2 1,747,929 + AO353_07925 0.15 -1.5 1,747,929 + AO353_07925 0.15 -1.8 1,747,985 - AO353_07925 0.22 -2.4 1,748,000 + AO353_07925 0.24 -1.2 1,748,064 + AO353_07925 0.32 -1.4 1,748,109 + AO353_07925 0.37 -1.5 1,748,208 + AO353_07925 0.49 +2.1 1,748,209 - AO353_07925 0.49 -0.3 1,748,265 + AO353_07925 0.56 -2.1 1,748,265 + AO353_07925 0.56 -0.6 1,748,266 - AO353_07925 0.56 -1.8 1,748,266 - AO353_07925 0.56 +1.9 1,748,267 + AO353_07925 0.56 +0.3 1,748,267 + AO353_07925 0.56 +0.5 1,748,267 + AO353_07925 0.56 -1.5 1,748,267 + AO353_07925 0.56 -0.1 1,748,267 + AO353_07925 0.56 -1.8 1,748,267 + AO353_07925 0.56 -0.5 1,748,267 + AO353_07925 0.56 -0.7 1,748,267 + AO353_07925 0.56 -1.1 1,748,267 + AO353_07925 0.56 -0.4 1,748,267 + AO353_07925 0.56 -0.7 1,748,268 - AO353_07925 0.56 -2.0 1,748,268 - AO353_07925 0.56 -1.9 1,748,268 - AO353_07925 0.56 +1.1 1,748,268 - AO353_07925 0.56 -0.1 1,748,268 - AO353_07925 0.56 -1.2 1,748,268 - AO353_07925 0.56 +0.9 1,748,269 + AO353_07925 0.56 -1.0 1,748,269 + AO353_07925 0.56 -2.0 1,748,269 + AO353_07925 0.56 -1.4 1,748,269 + AO353_07925 0.56 -0.8 1,748,270 - AO353_07925 0.57 -1.1 1,748,343 + AO353_07925 0.65 -2.2 1,748,343 + AO353_07925 0.65 -1.4 1,748,343 + AO353_07925 0.65 -0.5 1,748,344 - AO353_07925 0.66 -1.2 1,748,356 - AO353_07925 0.67 -1.1 1,748,356 - AO353_07925 0.67 +0.3 1,748,391 + AO353_07925 0.71 +0.1 1,748,391 + AO353_07925 0.71 -0.2 1,748,391 + AO353_07925 0.71 +1.5 1,748,391 + AO353_07925 0.71 -1.4 1,748,392 - AO353_07925 0.71 +1.0 1,748,392 - AO353_07925 0.71 -1.6 1,748,392 - AO353_07925 0.71 -1.4 1,748,418 + AO353_07925 0.75 +0.1 1,748,419 - AO353_07925 0.75 -1.5 1,748,515 + AO353_07925 0.86 -1.0 1,748,515 + AO353_07925 0.86 +1.1 1,748,515 + AO353_07925 0.86 -1.4 1,748,515 + AO353_07925 0.86 -1.2 1,748,515 + AO353_07925 0.86 -1.2 1,748,515 + AO353_07925 0.86 -1.4 1,748,516 - AO353_07925 0.86 +0.5 1,748,516 - AO353_07925 0.86 -2.3 1,748,516 - AO353_07925 0.86 -0.7 1,748,516 - AO353_07925 0.86 -0.9 1,748,541 - AO353_07925 0.89 -1.8 1,748,619 - -1.9 1,748,626 - -1.1 1,748,626 - -1.2 1,748,653 + -0.0 1,748,730 + +0.9 1,748,730 + -1.3 1,748,731 - -0.4
Or see this region's nucleotide sequence