Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07925

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07925 and AO353_07930 are separated by 101 nucleotides AO353_07925: AO353_07925 - beta-hydroxylase, at 1,747,803 to 1,748,627 _07925 AO353_07930: AO353_07930 - fructose-1,6-bisphosphate aldolase, at 1,748,729 to 1,749,793 _07930 Position (kb) 1747 1748 1749Strain fitness (log2 ratio) -2 -1 0 1 2at 1746.811 kb on + strandat 1746.812 kb on - strandat 1746.835 kb on + strandat 1746.908 kb on + strandat 1746.922 kb on + strandat 1746.922 kb on + strandat 1746.923 kb on - strandat 1746.923 kb on - strandat 1746.932 kb on - strandat 1747.007 kb on - strandat 1747.007 kb on - strandat 1747.038 kb on + strandat 1747.104 kb on + strandat 1747.109 kb on - strandat 1747.109 kb on - strandat 1747.168 kb on - strandat 1747.286 kb on - strandat 1747.329 kb on + strandat 1747.332 kb on + strandat 1747.332 kb on + strandat 1747.332 kb on + strandat 1747.352 kb on + strandat 1747.353 kb on - strandat 1747.368 kb on - strandat 1747.368 kb on - strandat 1747.387 kb on - strandat 1747.468 kb on - strandat 1747.473 kb on + strandat 1747.473 kb on + strandat 1747.473 kb on + strandat 1747.473 kb on + strandat 1747.473 kb on + strandat 1747.473 kb on + strandat 1747.473 kb on + strandat 1747.473 kb on + strandat 1747.473 kb on + strandat 1747.473 kb on + strandat 1747.474 kb on - strandat 1747.474 kb on - strandat 1747.474 kb on - strandat 1747.474 kb on - strandat 1747.474 kb on - strandat 1747.474 kb on - strandat 1747.474 kb on - strandat 1747.480 kb on + strandat 1747.488 kb on - strandat 1747.619 kb on + strandat 1747.619 kb on + strandat 1747.619 kb on + strandat 1747.619 kb on + strandat 1747.619 kb on + strandat 1747.620 kb on - strandat 1747.620 kb on - strandat 1747.620 kb on - strandat 1747.620 kb on - strandat 1747.620 kb on - strandat 1747.620 kb on - strandat 1747.620 kb on - strandat 1747.620 kb on - strandat 1747.620 kb on - strandat 1747.704 kb on - strandat 1747.741 kb on - strandat 1747.743 kb on + strandat 1747.743 kb on + strandat 1747.755 kb on - strandat 1747.848 kb on - strandat 1747.869 kb on - strandat 1747.869 kb on - strandat 1747.929 kb on + strand, within AO353_07925at 1747.929 kb on + strand, within AO353_07925at 1747.985 kb on - strand, within AO353_07925at 1748.000 kb on + strand, within AO353_07925at 1748.064 kb on + strand, within AO353_07925at 1748.109 kb on + strand, within AO353_07925at 1748.208 kb on + strand, within AO353_07925at 1748.209 kb on - strand, within AO353_07925at 1748.265 kb on + strand, within AO353_07925at 1748.265 kb on + strand, within AO353_07925at 1748.266 kb on - strand, within AO353_07925at 1748.266 kb on - strand, within AO353_07925at 1748.267 kb on + strand, within AO353_07925at 1748.267 kb on + strand, within AO353_07925at 1748.267 kb on + strand, within AO353_07925at 1748.267 kb on + strand, within AO353_07925at 1748.267 kb on + strand, within AO353_07925at 1748.267 kb on + strand, within AO353_07925at 1748.267 kb on + strand, within AO353_07925at 1748.267 kb on + strand, within AO353_07925at 1748.267 kb on + strand, within AO353_07925at 1748.267 kb on + strand, within AO353_07925at 1748.268 kb on - strand, within AO353_07925at 1748.268 kb on - strand, within AO353_07925at 1748.268 kb on - strand, within AO353_07925at 1748.268 kb on - strand, within AO353_07925at 1748.268 kb on - strand, within AO353_07925at 1748.268 kb on - strand, within AO353_07925at 1748.269 kb on + strand, within AO353_07925at 1748.269 kb on + strand, within AO353_07925at 1748.269 kb on + strand, within AO353_07925at 1748.269 kb on + strand, within AO353_07925at 1748.270 kb on - strand, within AO353_07925at 1748.343 kb on + strand, within AO353_07925at 1748.343 kb on + strand, within AO353_07925at 1748.343 kb on + strand, within AO353_07925at 1748.344 kb on - strand, within AO353_07925at 1748.356 kb on - strand, within AO353_07925at 1748.356 kb on - strand, within AO353_07925at 1748.391 kb on + strand, within AO353_07925at 1748.391 kb on + strand, within AO353_07925at 1748.391 kb on + strand, within AO353_07925at 1748.391 kb on + strand, within AO353_07925at 1748.392 kb on - strand, within AO353_07925at 1748.392 kb on - strand, within AO353_07925at 1748.392 kb on - strand, within AO353_07925at 1748.418 kb on + strand, within AO353_07925at 1748.419 kb on - strand, within AO353_07925at 1748.515 kb on + strand, within AO353_07925at 1748.515 kb on + strand, within AO353_07925at 1748.515 kb on + strand, within AO353_07925at 1748.515 kb on + strand, within AO353_07925at 1748.515 kb on + strand, within AO353_07925at 1748.515 kb on + strand, within AO353_07925at 1748.516 kb on - strand, within AO353_07925at 1748.516 kb on - strand, within AO353_07925at 1748.516 kb on - strand, within AO353_07925at 1748.516 kb on - strand, within AO353_07925at 1748.541 kb on - strand, within AO353_07925at 1748.619 kb on - strandat 1748.626 kb on - strandat 1748.626 kb on - strandat 1748.653 kb on + strandat 1748.730 kb on + strandat 1748.730 kb on + strandat 1748.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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1,746,811 + -1.9
1,746,812 - -1.1
1,746,835 + -0.9
1,746,908 + +0.3
1,746,922 + +1.6
1,746,922 + -1.2
1,746,923 - +0.2
1,746,923 - -0.0
1,746,932 - +2.0
1,747,007 - +1.3
1,747,007 - +0.1
1,747,038 + -0.6
1,747,104 + +0.1
1,747,109 - +0.9
1,747,109 - +1.6
1,747,168 - +0.8
1,747,286 - -1.9
1,747,329 + -0.7
1,747,332 + +1.2
1,747,332 + +0.5
1,747,332 + -1.6
1,747,352 + +1.0
1,747,353 - -1.0
1,747,368 - +0.5
1,747,368 - +2.5
1,747,387 - -0.9
1,747,468 - +1.1
1,747,473 + -1.7
1,747,473 + -1.5
1,747,473 + +0.8
1,747,473 + +1.3
1,747,473 + +0.1
1,747,473 + +0.9
1,747,473 + +0.8
1,747,473 + -1.5
1,747,473 + -0.1
1,747,473 + +0.7
1,747,474 - +1.0
1,747,474 - -0.4
1,747,474 - +2.2
1,747,474 - +1.9
1,747,474 - +1.7
1,747,474 - +0.7
1,747,474 - +1.8
1,747,480 + +1.2
1,747,488 - -0.4
1,747,619 + -0.9
1,747,619 + -0.9
1,747,619 + -1.0
1,747,619 + -0.9
1,747,619 + +0.1
1,747,620 - -2.5
1,747,620 - +0.5
1,747,620 - -1.9
1,747,620 - +0.1
1,747,620 - -0.4
1,747,620 - -0.3
1,747,620 - -0.8
1,747,620 - +0.1
1,747,620 - -1.6
1,747,704 - -1.6
1,747,741 - -0.1
1,747,743 + -0.8
1,747,743 + +1.3
1,747,755 - -1.7
1,747,848 - -1.6
1,747,869 - +0.1
1,747,869 - -0.2
1,747,929 + AO353_07925 0.15 -1.5
1,747,929 + AO353_07925 0.15 -1.8
1,747,985 - AO353_07925 0.22 -2.4
1,748,000 + AO353_07925 0.24 -1.2
1,748,064 + AO353_07925 0.32 -1.4
1,748,109 + AO353_07925 0.37 -1.5
1,748,208 + AO353_07925 0.49 +2.1
1,748,209 - AO353_07925 0.49 -0.3
1,748,265 + AO353_07925 0.56 -2.1
1,748,265 + AO353_07925 0.56 -0.6
1,748,266 - AO353_07925 0.56 -1.8
1,748,266 - AO353_07925 0.56 +1.9
1,748,267 + AO353_07925 0.56 +0.3
1,748,267 + AO353_07925 0.56 +0.5
1,748,267 + AO353_07925 0.56 -1.5
1,748,267 + AO353_07925 0.56 -0.1
1,748,267 + AO353_07925 0.56 -1.8
1,748,267 + AO353_07925 0.56 -0.5
1,748,267 + AO353_07925 0.56 -0.7
1,748,267 + AO353_07925 0.56 -1.1
1,748,267 + AO353_07925 0.56 -0.4
1,748,267 + AO353_07925 0.56 -0.7
1,748,268 - AO353_07925 0.56 -2.0
1,748,268 - AO353_07925 0.56 -1.9
1,748,268 - AO353_07925 0.56 +1.1
1,748,268 - AO353_07925 0.56 -0.1
1,748,268 - AO353_07925 0.56 -1.2
1,748,268 - AO353_07925 0.56 +0.9
1,748,269 + AO353_07925 0.56 -1.0
1,748,269 + AO353_07925 0.56 -2.0
1,748,269 + AO353_07925 0.56 -1.4
1,748,269 + AO353_07925 0.56 -0.8
1,748,270 - AO353_07925 0.57 -1.1
1,748,343 + AO353_07925 0.65 -2.2
1,748,343 + AO353_07925 0.65 -1.4
1,748,343 + AO353_07925 0.65 -0.5
1,748,344 - AO353_07925 0.66 -1.2
1,748,356 - AO353_07925 0.67 -1.1
1,748,356 - AO353_07925 0.67 +0.3
1,748,391 + AO353_07925 0.71 +0.1
1,748,391 + AO353_07925 0.71 -0.2
1,748,391 + AO353_07925 0.71 +1.5
1,748,391 + AO353_07925 0.71 -1.4
1,748,392 - AO353_07925 0.71 +1.0
1,748,392 - AO353_07925 0.71 -1.6
1,748,392 - AO353_07925 0.71 -1.4
1,748,418 + AO353_07925 0.75 +0.1
1,748,419 - AO353_07925 0.75 -1.5
1,748,515 + AO353_07925 0.86 -1.0
1,748,515 + AO353_07925 0.86 +1.1
1,748,515 + AO353_07925 0.86 -1.4
1,748,515 + AO353_07925 0.86 -1.2
1,748,515 + AO353_07925 0.86 -1.2
1,748,515 + AO353_07925 0.86 -1.4
1,748,516 - AO353_07925 0.86 +0.5
1,748,516 - AO353_07925 0.86 -2.3
1,748,516 - AO353_07925 0.86 -0.7
1,748,516 - AO353_07925 0.86 -0.9
1,748,541 - AO353_07925 0.89 -1.8
1,748,619 - -1.9
1,748,626 - -1.1
1,748,626 - -1.2
1,748,653 + -0.0
1,748,730 + +0.9
1,748,730 + -1.3
1,748,731 - -0.4

Or see this region's nucleotide sequence