Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06445 and AO353_06450 overlap by 1 nucleotides AO353_06450 and AO353_06455 are separated by 83 nucleotides AO353_06455 and AO353_06460 are separated by 193 nucleotides
AO353_06445: AO353_06445 - lipoate--protein ligase, at 1,436,945 to 1,437,592
_06445
AO353_06450: AO353_06450 - hypothetical protein, at 1,437,592 to 1,437,867
_06450
AO353_06455: AO353_06455 - D-alanyl-D-alanine carboxypeptidase, at 1,437,951 to 1,439,108
_06455
AO353_06460: AO353_06460 - hypothetical protein, at 1,439,302 to 1,440,312
_06460
Position (kb)
1437
1438
1439
1440 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1437.884 kb on - strand at 1437.884 kb on - strand at 1437.890 kb on - strand at 1437.890 kb on - strand at 1437.890 kb on - strand at 1437.890 kb on - strand at 1437.890 kb on - strand at 1437.950 kb on - strand at 1437.950 kb on - strand at 1437.950 kb on - strand at 1437.987 kb on - strand at 1438.008 kb on - strand at 1438.008 kb on - strand at 1438.008 kb on - strand at 1438.008 kb on - strand at 1438.008 kb on - strand at 1438.086 kb on - strand, within AO353_06455 at 1438.522 kb on + strand, within AO353_06455 at 1438.531 kb on + strand, within AO353_06455 at 1438.532 kb on - strand, within AO353_06455 at 1438.595 kb on - strand, within AO353_06455 at 1438.897 kb on + strand, within AO353_06455 at 1438.898 kb on - strand, within AO353_06455 at 1438.898 kb on - strand, within AO353_06455 at 1438.994 kb on - strand at 1439.153 kb on + strand at 1439.154 kb on - strand at 1439.154 kb on - strand at 1439.216 kb on - strand at 1439.216 kb on - strand at 1439.233 kb on + strand at 1439.234 kb on - strand at 1439.234 kb on - strand at 1439.234 kb on - strand at 1439.234 kb on - strand at 1439.234 kb on - strand at 1439.234 kb on - strand at 1439.234 kb on - strand at 1439.234 kb on - strand at 1439.234 kb on - strand at 1439.303 kb on + strand at 1439.304 kb on - strand at 1439.647 kb on - strand, within AO353_06460 at 1439.829 kb on - strand, within AO353_06460 at 1439.829 kb on - strand, within AO353_06460 at 1439.897 kb on + strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.898 kb on - strand, within AO353_06460 at 1439.949 kb on - strand, within AO353_06460 at 1439.949 kb on - strand, within AO353_06460 at 1439.949 kb on - strand, within AO353_06460 at 1439.949 kb on - strand, within AO353_06460 at 1439.949 kb on - strand, within AO353_06460 at 1439.949 kb on - strand, within AO353_06460 at 1440.021 kb on - strand, within AO353_06460 at 1440.021 kb on - strand, within AO353_06460 at 1440.021 kb on - strand, within AO353_06460 at 1440.021 kb on - strand, within AO353_06460 at 1440.021 kb on - strand, within AO353_06460 at 1440.021 kb on - strand, within AO353_06460 at 1440.021 kb on - strand, within AO353_06460 at 1440.048 kb on - strand, within AO353_06460 at 1440.048 kb on - strand, within AO353_06460 at 1440.048 kb on - strand, within AO353_06460 at 1440.067 kb on - strand, within AO353_06460 at 1440.067 kb on - strand, within AO353_06460 at 1440.067 kb on - strand, within AO353_06460 at 1440.069 kb on - strand, within AO353_06460 at 1440.084 kb on - strand, within AO353_06460 at 1440.084 kb on - strand, within AO353_06460
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 1,437,884 - -1.6 1,437,884 - +2.4 1,437,890 - +3.0 1,437,890 - -1.3 1,437,890 - -1.3 1,437,890 - -1.4 1,437,890 - +0.5 1,437,950 - +0.3 1,437,950 - -1.7 1,437,950 - -0.3 1,437,987 - +0.4 1,438,008 - -0.5 1,438,008 - -0.5 1,438,008 - +0.0 1,438,008 - +1.4 1,438,008 - -0.4 1,438,086 - AO353_06455 0.12 +1.1 1,438,522 + AO353_06455 0.49 -0.6 1,438,531 + AO353_06455 0.50 -1.1 1,438,532 - AO353_06455 0.50 -2.1 1,438,595 - AO353_06455 0.56 +3.1 1,438,897 + AO353_06455 0.82 +1.2 1,438,898 - AO353_06455 0.82 -1.7 1,438,898 - AO353_06455 0.82 -1.4 1,438,994 - +2.6 1,439,153 + -0.1 1,439,154 - +2.0 1,439,154 - +0.2 1,439,216 - +1.1 1,439,216 - +1.8 1,439,233 + +2.0 1,439,234 - +1.0 1,439,234 - +1.3 1,439,234 - +0.5 1,439,234 - +0.8 1,439,234 - -1.0 1,439,234 - +0.8 1,439,234 - -0.8 1,439,234 - +3.4 1,439,234 - +1.4 1,439,303 + -1.8 1,439,304 - +0.5 1,439,647 - AO353_06460 0.34 +0.7 1,439,829 - AO353_06460 0.52 +1.4 1,439,829 - AO353_06460 0.52 -1.2 1,439,897 + AO353_06460 0.59 -0.4 1,439,898 - AO353_06460 0.59 -1.4 1,439,898 - AO353_06460 0.59 +0.7 1,439,898 - AO353_06460 0.59 +0.5 1,439,898 - AO353_06460 0.59 +2.4 1,439,898 - AO353_06460 0.59 -0.5 1,439,898 - AO353_06460 0.59 -1.2 1,439,898 - AO353_06460 0.59 +0.3 1,439,898 - AO353_06460 0.59 +1.4 1,439,898 - AO353_06460 0.59 +0.9 1,439,898 - AO353_06460 0.59 +1.3 1,439,898 - AO353_06460 0.59 +1.9 1,439,898 - AO353_06460 0.59 +0.8 1,439,898 - AO353_06460 0.59 +0.1 1,439,898 - AO353_06460 0.59 +1.4 1,439,898 - AO353_06460 0.59 -0.8 1,439,898 - AO353_06460 0.59 -1.7 1,439,949 - AO353_06460 0.64 +1.1 1,439,949 - AO353_06460 0.64 -0.6 1,439,949 - AO353_06460 0.64 +0.9 1,439,949 - AO353_06460 0.64 +0.5 1,439,949 - AO353_06460 0.64 +2.6 1,439,949 - AO353_06460 0.64 +1.5 1,440,021 - AO353_06460 0.71 -2.2 1,440,021 - AO353_06460 0.71 -0.4 1,440,021 - AO353_06460 0.71 +1.9 1,440,021 - AO353_06460 0.71 +1.1 1,440,021 - AO353_06460 0.71 +2.0 1,440,021 - AO353_06460 0.71 +2.4 1,440,021 - AO353_06460 0.71 +2.8 1,440,048 - AO353_06460 0.74 +0.6 1,440,048 - AO353_06460 0.74 -1.1 1,440,048 - AO353_06460 0.74 -3.2 1,440,067 - AO353_06460 0.76 +0.7 1,440,067 - AO353_06460 0.76 -0.6 1,440,067 - AO353_06460 0.76 -1.3 1,440,069 - AO353_06460 0.76 +0.6 1,440,084 - AO353_06460 0.77 -1.6 1,440,084 - AO353_06460 0.77 -1.2
Or see this region's nucleotide sequence