Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06455

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06445 and AO353_06450 overlap by 1 nucleotidesAO353_06450 and AO353_06455 are separated by 83 nucleotidesAO353_06455 and AO353_06460 are separated by 193 nucleotides AO353_06445: AO353_06445 - lipoate--protein ligase, at 1,436,945 to 1,437,592 _06445 AO353_06450: AO353_06450 - hypothetical protein, at 1,437,592 to 1,437,867 _06450 AO353_06455: AO353_06455 - D-alanyl-D-alanine carboxypeptidase, at 1,437,951 to 1,439,108 _06455 AO353_06460: AO353_06460 - hypothetical protein, at 1,439,302 to 1,440,312 _06460 Position (kb) 1437 1438 1439 1440Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1437.884 kb on - strandat 1437.884 kb on - strandat 1437.890 kb on - strandat 1437.890 kb on - strandat 1437.890 kb on - strandat 1437.890 kb on - strandat 1437.890 kb on - strandat 1437.950 kb on - strandat 1437.950 kb on - strandat 1437.950 kb on - strandat 1437.987 kb on - strandat 1438.008 kb on - strandat 1438.008 kb on - strandat 1438.008 kb on - strandat 1438.008 kb on - strandat 1438.008 kb on - strandat 1438.086 kb on - strand, within AO353_06455at 1438.522 kb on + strand, within AO353_06455at 1438.531 kb on + strand, within AO353_06455at 1438.532 kb on - strand, within AO353_06455at 1438.595 kb on - strand, within AO353_06455at 1438.897 kb on + strand, within AO353_06455at 1438.898 kb on - strand, within AO353_06455at 1438.898 kb on - strand, within AO353_06455at 1438.994 kb on - strandat 1439.153 kb on + strandat 1439.154 kb on - strandat 1439.154 kb on - strandat 1439.216 kb on - strandat 1439.216 kb on - strandat 1439.233 kb on + strandat 1439.234 kb on - strandat 1439.234 kb on - strandat 1439.234 kb on - strandat 1439.234 kb on - strandat 1439.234 kb on - strandat 1439.234 kb on - strandat 1439.234 kb on - strandat 1439.234 kb on - strandat 1439.234 kb on - strandat 1439.303 kb on + strandat 1439.304 kb on - strandat 1439.647 kb on - strand, within AO353_06460at 1439.829 kb on - strand, within AO353_06460at 1439.829 kb on - strand, within AO353_06460at 1439.897 kb on + strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.898 kb on - strand, within AO353_06460at 1439.949 kb on - strand, within AO353_06460at 1439.949 kb on - strand, within AO353_06460at 1439.949 kb on - strand, within AO353_06460at 1439.949 kb on - strand, within AO353_06460at 1439.949 kb on - strand, within AO353_06460at 1439.949 kb on - strand, within AO353_06460at 1440.021 kb on - strand, within AO353_06460at 1440.021 kb on - strand, within AO353_06460at 1440.021 kb on - strand, within AO353_06460at 1440.021 kb on - strand, within AO353_06460at 1440.021 kb on - strand, within AO353_06460at 1440.021 kb on - strand, within AO353_06460at 1440.021 kb on - strand, within AO353_06460at 1440.048 kb on - strand, within AO353_06460at 1440.048 kb on - strand, within AO353_06460at 1440.048 kb on - strand, within AO353_06460at 1440.067 kb on - strand, within AO353_06460at 1440.067 kb on - strand, within AO353_06460at 1440.067 kb on - strand, within AO353_06460at 1440.069 kb on - strand, within AO353_06460at 1440.084 kb on - strand, within AO353_06460at 1440.084 kb on - strand, within AO353_06460

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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1,437,884 - -1.6
1,437,884 - +2.4
1,437,890 - +3.0
1,437,890 - -1.3
1,437,890 - -1.3
1,437,890 - -1.4
1,437,890 - +0.5
1,437,950 - +0.3
1,437,950 - -1.7
1,437,950 - -0.3
1,437,987 - +0.4
1,438,008 - -0.5
1,438,008 - -0.5
1,438,008 - +0.0
1,438,008 - +1.4
1,438,008 - -0.4
1,438,086 - AO353_06455 0.12 +1.1
1,438,522 + AO353_06455 0.49 -0.6
1,438,531 + AO353_06455 0.50 -1.1
1,438,532 - AO353_06455 0.50 -2.1
1,438,595 - AO353_06455 0.56 +3.1
1,438,897 + AO353_06455 0.82 +1.2
1,438,898 - AO353_06455 0.82 -1.7
1,438,898 - AO353_06455 0.82 -1.4
1,438,994 - +2.6
1,439,153 + -0.1
1,439,154 - +2.0
1,439,154 - +0.2
1,439,216 - +1.1
1,439,216 - +1.8
1,439,233 + +2.0
1,439,234 - +1.0
1,439,234 - +1.3
1,439,234 - +0.5
1,439,234 - +0.8
1,439,234 - -1.0
1,439,234 - +0.8
1,439,234 - -0.8
1,439,234 - +3.4
1,439,234 - +1.4
1,439,303 + -1.8
1,439,304 - +0.5
1,439,647 - AO353_06460 0.34 +0.7
1,439,829 - AO353_06460 0.52 +1.4
1,439,829 - AO353_06460 0.52 -1.2
1,439,897 + AO353_06460 0.59 -0.4
1,439,898 - AO353_06460 0.59 -1.4
1,439,898 - AO353_06460 0.59 +0.7
1,439,898 - AO353_06460 0.59 +0.5
1,439,898 - AO353_06460 0.59 +2.4
1,439,898 - AO353_06460 0.59 -0.5
1,439,898 - AO353_06460 0.59 -1.2
1,439,898 - AO353_06460 0.59 +0.3
1,439,898 - AO353_06460 0.59 +1.4
1,439,898 - AO353_06460 0.59 +0.9
1,439,898 - AO353_06460 0.59 +1.3
1,439,898 - AO353_06460 0.59 +1.9
1,439,898 - AO353_06460 0.59 +0.8
1,439,898 - AO353_06460 0.59 +0.1
1,439,898 - AO353_06460 0.59 +1.4
1,439,898 - AO353_06460 0.59 -0.8
1,439,898 - AO353_06460 0.59 -1.7
1,439,949 - AO353_06460 0.64 +1.1
1,439,949 - AO353_06460 0.64 -0.6
1,439,949 - AO353_06460 0.64 +0.9
1,439,949 - AO353_06460 0.64 +0.5
1,439,949 - AO353_06460 0.64 +2.6
1,439,949 - AO353_06460 0.64 +1.5
1,440,021 - AO353_06460 0.71 -2.2
1,440,021 - AO353_06460 0.71 -0.4
1,440,021 - AO353_06460 0.71 +1.9
1,440,021 - AO353_06460 0.71 +1.1
1,440,021 - AO353_06460 0.71 +2.0
1,440,021 - AO353_06460 0.71 +2.4
1,440,021 - AO353_06460 0.71 +2.8
1,440,048 - AO353_06460 0.74 +0.6
1,440,048 - AO353_06460 0.74 -1.1
1,440,048 - AO353_06460 0.74 -3.2
1,440,067 - AO353_06460 0.76 +0.7
1,440,067 - AO353_06460 0.76 -0.6
1,440,067 - AO353_06460 0.76 -1.3
1,440,069 - AO353_06460 0.76 +0.6
1,440,084 - AO353_06460 0.77 -1.6
1,440,084 - AO353_06460 0.77 -1.2

Or see this region's nucleotide sequence