Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06110

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_06105 and AO353_06110 are separated by 230 nucleotidesAO353_06110 and AO353_06115 are separated by 153 nucleotides AO353_06105: AO353_06105 - short-chain dehydrogenase, at 1,361,780 to 1,362,466 _06105 AO353_06110: AO353_06110 - 8-oxoguanine deaminase, at 1,362,697 to 1,364,055 _06110 AO353_06115: AO353_06115 - adenosine deaminase, at 1,364,209 to 1,365,162 _06115 Position (kb) 1362 1363 1364 1365Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1361.702 kb on + strandat 1361.703 kb on - strandat 1361.703 kb on - strandat 1361.726 kb on + strandat 1361.763 kb on + strandat 1361.763 kb on + strandat 1361.763 kb on + strandat 1361.764 kb on - strandat 1361.764 kb on - strandat 1361.764 kb on - strandat 1361.764 kb on - strandat 1361.785 kb on + strandat 1361.785 kb on + strandat 1361.786 kb on - strandat 1361.790 kb on + strandat 1361.791 kb on - strandat 1361.887 kb on + strand, within AO353_06105at 1361.928 kb on + strand, within AO353_06105at 1362.162 kb on + strand, within AO353_06105at 1362.162 kb on + strand, within AO353_06105at 1362.162 kb on + strand, within AO353_06105at 1362.162 kb on + strand, within AO353_06105at 1362.163 kb on - strand, within AO353_06105at 1362.163 kb on - strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.227 kb on + strand, within AO353_06105at 1362.228 kb on - strand, within AO353_06105at 1362.228 kb on - strand, within AO353_06105at 1362.228 kb on - strand, within AO353_06105at 1362.228 kb on - strand, within AO353_06105at 1362.228 kb on - strand, within AO353_06105at 1362.228 kb on - strand, within AO353_06105at 1362.228 kb on - strand, within AO353_06105at 1362.228 kb on - strand, within AO353_06105at 1362.228 kb on - strand, within AO353_06105at 1362.407 kb on + strandat 1362.408 kb on - strandat 1362.408 kb on - strandat 1362.464 kb on + strandat 1362.519 kb on + strandat 1362.519 kb on + strandat 1362.520 kb on - strandat 1362.520 kb on - strandat 1362.520 kb on - strandat 1362.520 kb on - strandat 1362.520 kb on - strandat 1362.520 kb on - strandat 1362.520 kb on - strandat 1362.523 kb on - strandat 1362.523 kb on - strandat 1362.540 kb on - strandat 1362.556 kb on - strandat 1362.556 kb on - strandat 1362.556 kb on - strandat 1362.556 kb on - strandat 1362.556 kb on - strandat 1362.577 kb on + strandat 1362.577 kb on + strandat 1362.600 kb on + strandat 1362.600 kb on + strandat 1362.600 kb on + strandat 1362.601 kb on - strandat 1362.601 kb on - strandat 1362.711 kb on + strandat 1362.712 kb on - strandat 1362.720 kb on - strandat 1362.803 kb on + strandat 1362.803 kb on + strandat 1362.804 kb on - strandat 1362.904 kb on + strand, within AO353_06110at 1362.904 kb on + strand, within AO353_06110at 1362.905 kb on - strand, within AO353_06110at 1362.905 kb on - strand, within AO353_06110at 1362.905 kb on - strand, within AO353_06110at 1362.905 kb on - strand, within AO353_06110at 1362.905 kb on - strand, within AO353_06110at 1362.905 kb on - strand, within AO353_06110at 1362.905 kb on - strand, within AO353_06110at 1363.078 kb on + strand, within AO353_06110at 1363.078 kb on + strand, within AO353_06110at 1363.078 kb on + strand, within AO353_06110at 1363.078 kb on + strand, within AO353_06110at 1363.078 kb on + strand, within AO353_06110at 1363.078 kb on + strand, within AO353_06110at 1363.078 kb on + strand, within AO353_06110at 1363.078 kb on + strand, within AO353_06110at 1363.079 kb on - strand, within AO353_06110at 1363.079 kb on - strand, within AO353_06110at 1363.079 kb on - strand, within AO353_06110at 1363.079 kb on - strand, within AO353_06110at 1363.079 kb on - strand, within AO353_06110at 1363.079 kb on - strand, within AO353_06110at 1363.079 kb on - strand, within AO353_06110at 1363.079 kb on - strand, within AO353_06110at 1363.079 kb on - strand, within AO353_06110at 1363.143 kb on + strand, within AO353_06110at 1363.268 kb on - strand, within AO353_06110at 1363.462 kb on + strand, within AO353_06110at 1363.463 kb on - strand, within AO353_06110at 1363.717 kb on + strand, within AO353_06110at 1363.717 kb on + strand, within AO353_06110at 1363.718 kb on - strand, within AO353_06110at 1363.718 kb on - strand, within AO353_06110at 1363.718 kb on - strand, within AO353_06110at 1363.718 kb on - strand, within AO353_06110at 1364.069 kb on + strandat 1364.069 kb on + strandat 1364.069 kb on + strandat 1364.069 kb on + strandat 1364.069 kb on + strandat 1364.069 kb on + strandat 1364.069 kb on + strandat 1364.070 kb on - strandat 1364.070 kb on - strandat 1364.070 kb on - strandat 1364.070 kb on - strandat 1364.070 kb on - strandat 1364.070 kb on - strandat 1364.070 kb on - strandat 1364.070 kb on - strandat 1364.091 kb on + strandat 1364.091 kb on + strandat 1364.091 kb on + strandat 1364.091 kb on + strandat 1364.091 kb on + strandat 1364.091 kb on + strandat 1364.092 kb on - strandat 1364.092 kb on - strandat 1364.092 kb on - strandat 1364.092 kb on - strandat 1364.092 kb on - strandat 1364.092 kb on - strandat 1364.113 kb on - strandat 1364.150 kb on + strandat 1364.150 kb on + strandat 1364.150 kb on + strandat 1364.151 kb on - strandat 1364.151 kb on - strandat 1364.160 kb on + strandat 1364.160 kb on + strandat 1364.160 kb on + strandat 1364.160 kb on + strandat 1364.172 kb on + strandat 1364.172 kb on + strandat 1364.172 kb on + strandat 1364.172 kb on + strandat 1364.172 kb on + strandat 1364.172 kb on + strandat 1364.172 kb on + strandat 1364.173 kb on - strandat 1364.173 kb on - strandat 1364.173 kb on - strandat 1364.173 kb on - strandat 1364.173 kb on - strandat 1364.173 kb on - strandat 1364.173 kb on - strandat 1364.173 kb on - strandat 1364.184 kb on + strandat 1364.184 kb on + strandat 1364.184 kb on + strandat 1364.185 kb on - strandat 1364.185 kb on - strandat 1364.185 kb on - strandat 1364.185 kb on - strandat 1364.190 kb on + strandat 1364.190 kb on + strandat 1364.190 kb on + strandat 1364.191 kb on - strandat 1364.191 kb on - strandat 1364.191 kb on - strandat 1364.191 kb on - strandat 1364.208 kb on + strandat 1364.208 kb on + strandat 1364.208 kb on + strandat 1364.208 kb on + strandat 1364.208 kb on + strandat 1364.208 kb on + strandat 1364.208 kb on + strandat 1364.208 kb on + strandat 1364.208 kb on + strandat 1364.209 kb on - strandat 1364.209 kb on - strandat 1364.209 kb on - strandat 1364.209 kb on - strandat 1364.209 kb on - strandat 1364.209 kb on - strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.212 kb on + strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.213 kb on - strandat 1364.214 kb on - strandat 1364.353 kb on + strand, within AO353_06115at 1364.353 kb on + strand, within AO353_06115at 1364.353 kb on + strand, within AO353_06115at 1364.353 kb on + strand, within AO353_06115at 1364.353 kb on + strand, within AO353_06115at 1364.354 kb on - strand, within AO353_06115at 1364.354 kb on - strand, within AO353_06115at 1364.354 kb on - strand, within AO353_06115at 1364.389 kb on + strand, within AO353_06115at 1364.389 kb on + strand, within AO353_06115at 1364.389 kb on + strand, within AO353_06115at 1364.389 kb on + strand, within AO353_06115at 1364.389 kb on + strand, within AO353_06115at 1364.389 kb on + strand, within AO353_06115at 1364.390 kb on - strand, within AO353_06115at 1364.390 kb on - strand, within AO353_06115at 1364.390 kb on - strand, within AO353_06115at 1364.390 kb on - strand, within AO353_06115at 1364.390 kb on - strand, within AO353_06115at 1364.390 kb on - strand, within AO353_06115at 1364.431 kb on + strand, within AO353_06115at 1364.431 kb on + strand, within AO353_06115at 1364.432 kb on - strand, within AO353_06115at 1364.432 kb on - strand, within AO353_06115at 1364.449 kb on + strand, within AO353_06115at 1364.449 kb on + strand, within AO353_06115at 1364.450 kb on - strand, within AO353_06115at 1364.815 kb on + strand, within AO353_06115at 1364.815 kb on + strand, within AO353_06115at 1364.816 kb on - strand, within AO353_06115at 1364.816 kb on - strand, within AO353_06115at 1364.816 kb on - strand, within AO353_06115at 1364.853 kb on + strand, within AO353_06115at 1365.018 kb on + strand, within AO353_06115at 1365.043 kb on + strand, within AO353_06115at 1365.043 kb on + strand, within AO353_06115at 1365.043 kb on + strand, within AO353_06115at 1365.043 kb on + strand, within AO353_06115at 1365.043 kb on + strand, within AO353_06115at 1365.044 kb on - strand, within AO353_06115at 1365.055 kb on + strand, within AO353_06115at 1365.055 kb on + strand, within AO353_06115at 1365.055 kb on + strand, within AO353_06115at 1365.055 kb on + strand, within AO353_06115

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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1,361,702 + +0.2
1,361,703 - -0.3
1,361,703 - +0.5
1,361,726 + +0.8
1,361,763 + -1.8
1,361,763 + +0.6
1,361,763 + +0.5
1,361,764 - +0.4
1,361,764 - -0.2
1,361,764 - -0.6
1,361,764 - -0.6
1,361,785 + -1.4
1,361,785 + -1.3
1,361,786 - +1.3
1,361,790 + -0.4
1,361,791 - +0.4
1,361,887 + AO353_06105 0.16 +0.5
1,361,928 + AO353_06105 0.22 -0.6
1,362,162 + AO353_06105 0.56 -1.5
1,362,162 + AO353_06105 0.56 -0.7
1,362,162 + AO353_06105 0.56 +1.0
1,362,162 + AO353_06105 0.56 +1.0
1,362,163 - AO353_06105 0.56 +1.8
1,362,163 - AO353_06105 0.56 -0.4
1,362,227 + AO353_06105 0.65 +0.3
1,362,227 + AO353_06105 0.65 +0.2
1,362,227 + AO353_06105 0.65 -0.8
1,362,227 + AO353_06105 0.65 +0.1
1,362,227 + AO353_06105 0.65 +1.3
1,362,227 + AO353_06105 0.65 -0.4
1,362,227 + AO353_06105 0.65 +2.5
1,362,227 + AO353_06105 0.65 +1.7
1,362,227 + AO353_06105 0.65 -1.0
1,362,227 + AO353_06105 0.65 +0.6
1,362,227 + AO353_06105 0.65 +1.1
1,362,227 + AO353_06105 0.65 -1.3
1,362,227 + AO353_06105 0.65 +0.1
1,362,227 + AO353_06105 0.65 -0.9
1,362,228 - AO353_06105 0.65 +0.2
1,362,228 - AO353_06105 0.65 -1.0
1,362,228 - AO353_06105 0.65 -1.2
1,362,228 - AO353_06105 0.65 -1.2
1,362,228 - AO353_06105 0.65 -1.5
1,362,228 - AO353_06105 0.65 -1.9
1,362,228 - AO353_06105 0.65 +1.7
1,362,228 - AO353_06105 0.65 -1.2
1,362,228 - AO353_06105 0.65 +0.7
1,362,407 + +1.6
1,362,408 - +0.7
1,362,408 - -0.9
1,362,464 + +1.4
1,362,519 + +0.2
1,362,519 + -1.4
1,362,520 - -2.7
1,362,520 - +1.0
1,362,520 - +0.2
1,362,520 - -0.8
1,362,520 - +0.2
1,362,520 - +1.9
1,362,520 - -1.8
1,362,523 - -1.1
1,362,523 - +3.4
1,362,540 - -0.6
1,362,556 - -0.6
1,362,556 - +0.4
1,362,556 - -1.3
1,362,556 - -1.4
1,362,556 - -1.0
1,362,577 + -0.2
1,362,577 + +0.5
1,362,600 + +0.3
1,362,600 + -0.6
1,362,600 + -0.6
1,362,601 - +2.4
1,362,601 - +0.7
1,362,711 + -0.4
1,362,712 - +0.4
1,362,720 - +0.2
1,362,803 + -1.6
1,362,803 + -1.4
1,362,804 - +1.7
1,362,904 + AO353_06110 0.15 +0.6
1,362,904 + AO353_06110 0.15 -2.4
1,362,905 - AO353_06110 0.15 -1.4
1,362,905 - AO353_06110 0.15 -0.1
1,362,905 - AO353_06110 0.15 -0.2
1,362,905 - AO353_06110 0.15 +1.4
1,362,905 - AO353_06110 0.15 -0.2
1,362,905 - AO353_06110 0.15 -2.0
1,362,905 - AO353_06110 0.15 +0.2
1,363,078 + AO353_06110 0.28 +0.7
1,363,078 + AO353_06110 0.28 -0.6
1,363,078 + AO353_06110 0.28 +0.1
1,363,078 + AO353_06110 0.28 +0.2
1,363,078 + AO353_06110 0.28 +1.7
1,363,078 + AO353_06110 0.28 +0.1
1,363,078 + AO353_06110 0.28 +1.1
1,363,078 + AO353_06110 0.28 -0.6
1,363,079 - AO353_06110 0.28 -1.0
1,363,079 - AO353_06110 0.28 +0.4
1,363,079 - AO353_06110 0.28 -0.2
1,363,079 - AO353_06110 0.28 +0.5
1,363,079 - AO353_06110 0.28 -1.6
1,363,079 - AO353_06110 0.28 -0.6
1,363,079 - AO353_06110 0.28 -1.3
1,363,079 - AO353_06110 0.28 +0.5
1,363,079 - AO353_06110 0.28 +0.4
1,363,143 + AO353_06110 0.33 +0.4
1,363,268 - AO353_06110 0.42 +1.2
1,363,462 + AO353_06110 0.56 +3.4
1,363,463 - AO353_06110 0.56 +0.4
1,363,717 + AO353_06110 0.75 -0.9
1,363,717 + AO353_06110 0.75 +2.0
1,363,718 - AO353_06110 0.75 -2.2
1,363,718 - AO353_06110 0.75 +1.1
1,363,718 - AO353_06110 0.75 -0.4
1,363,718 - AO353_06110 0.75 +0.4
1,364,069 + +1.1
1,364,069 + -0.7
1,364,069 + -0.1
1,364,069 + +0.8
1,364,069 + -0.9
1,364,069 + +1.0
1,364,069 + -2.1
1,364,070 - +0.8
1,364,070 - -1.2
1,364,070 - -0.8
1,364,070 - -0.8
1,364,070 - +1.4
1,364,070 - -0.3
1,364,070 - -0.2
1,364,070 - -0.1
1,364,091 + +0.4
1,364,091 + -2.1
1,364,091 + +1.0
1,364,091 + -0.8
1,364,091 + +0.1
1,364,091 + -0.4
1,364,092 - +1.4
1,364,092 - +0.3
1,364,092 - +0.2
1,364,092 - +0.1
1,364,092 - +0.2
1,364,092 - +1.6
1,364,113 - +1.7
1,364,150 + +1.2
1,364,150 + +0.1
1,364,150 + -2.1
1,364,151 - +1.3
1,364,151 - -0.8
1,364,160 + +0.8
1,364,160 + +0.1
1,364,160 + -0.1
1,364,160 + -0.4
1,364,172 + +1.3
1,364,172 + +0.8
1,364,172 + -1.5
1,364,172 + +1.1
1,364,172 + +0.3
1,364,172 + +0.8
1,364,172 + -1.6
1,364,173 - +0.4
1,364,173 - -1.7
1,364,173 - +1.2
1,364,173 - -0.9
1,364,173 - -1.1
1,364,173 - +1.8
1,364,173 - -0.4
1,364,173 - -0.2
1,364,184 + +1.8
1,364,184 + -0.2
1,364,184 + -0.2
1,364,185 - +1.1
1,364,185 - -0.4
1,364,185 - +0.3
1,364,185 - -0.2
1,364,190 + -1.1
1,364,190 + +0.8
1,364,190 + -0.9
1,364,191 - -0.8
1,364,191 - -0.9
1,364,191 - -0.5
1,364,191 - +0.2
1,364,208 + -1.5
1,364,208 + +0.8
1,364,208 + -1.7
1,364,208 + -0.6
1,364,208 + -0.3
1,364,208 + +0.1
1,364,208 + -0.6
1,364,208 + +0.1
1,364,208 + +0.4
1,364,209 - +0.3
1,364,209 - +0.8
1,364,209 - -0.4
1,364,209 - -0.4
1,364,209 - +0.1
1,364,209 - +1.4
1,364,212 + -0.3
1,364,212 + -0.6
1,364,212 + -1.4
1,364,212 + -0.1
1,364,212 + -0.9
1,364,212 + -1.7
1,364,212 + -0.4
1,364,212 + +1.1
1,364,212 + -1.1
1,364,212 + +0.7
1,364,212 + +0.4
1,364,212 + +0.4
1,364,212 + -1.1
1,364,212 + +1.0
1,364,212 + +1.4
1,364,212 + +0.7
1,364,213 - -2.1
1,364,213 - -1.9
1,364,213 - +0.2
1,364,213 - -0.9
1,364,213 - +0.7
1,364,213 - -1.6
1,364,213 - +0.1
1,364,213 - -1.1
1,364,213 - +0.6
1,364,213 - -0.9
1,364,213 - +0.4
1,364,213 - +0.8
1,364,213 - +0.6
1,364,213 - -0.9
1,364,213 - +0.9
1,364,213 - -0.7
1,364,214 - +0.5
1,364,353 + AO353_06115 0.15 -0.2
1,364,353 + AO353_06115 0.15 -1.6
1,364,353 + AO353_06115 0.15 -0.5
1,364,353 + AO353_06115 0.15 -1.1
1,364,353 + AO353_06115 0.15 +0.6
1,364,354 - AO353_06115 0.15 +0.7
1,364,354 - AO353_06115 0.15 +0.9
1,364,354 - AO353_06115 0.15 +1.7
1,364,389 + AO353_06115 0.19 -0.9
1,364,389 + AO353_06115 0.19 +0.2
1,364,389 + AO353_06115 0.19 -0.2
1,364,389 + AO353_06115 0.19 -0.4
1,364,389 + AO353_06115 0.19 -1.8
1,364,389 + AO353_06115 0.19 -1.5
1,364,390 - AO353_06115 0.19 +1.6
1,364,390 - AO353_06115 0.19 -1.1
1,364,390 - AO353_06115 0.19 -0.8
1,364,390 - AO353_06115 0.19 +2.2
1,364,390 - AO353_06115 0.19 -0.1
1,364,390 - AO353_06115 0.19 -1.8
1,364,431 + AO353_06115 0.23 -0.7
1,364,431 + AO353_06115 0.23 -0.4
1,364,432 - AO353_06115 0.23 +0.3
1,364,432 - AO353_06115 0.23 +0.9
1,364,449 + AO353_06115 0.25 -0.2
1,364,449 + AO353_06115 0.25 +1.2
1,364,450 - AO353_06115 0.25 -1.8
1,364,815 + AO353_06115 0.64 +0.1
1,364,815 + AO353_06115 0.64 -2.4
1,364,816 - AO353_06115 0.64 +1.2
1,364,816 - AO353_06115 0.64 +0.1
1,364,816 - AO353_06115 0.64 +1.5
1,364,853 + AO353_06115 0.68 +0.8
1,365,018 + AO353_06115 0.85 +1.2
1,365,043 + AO353_06115 0.87 -0.9
1,365,043 + AO353_06115 0.87 -1.8
1,365,043 + AO353_06115 0.87 -2.0
1,365,043 + AO353_06115 0.87 +2.4
1,365,043 + AO353_06115 0.87 -0.4
1,365,044 - AO353_06115 0.88 -0.2
1,365,055 + AO353_06115 0.89 +0.0
1,365,055 + AO353_06115 0.89 -1.1
1,365,055 + AO353_06115 0.89 +2.7
1,365,055 + AO353_06115 0.89 -2.2

Or see this region's nucleotide sequence