Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_06105 and AO353_06110 are separated by 230 nucleotides AO353_06110 and AO353_06115 are separated by 153 nucleotides
AO353_06105: AO353_06105 - short-chain dehydrogenase, at 1,361,780 to 1,362,466
_06105
AO353_06110: AO353_06110 - 8-oxoguanine deaminase, at 1,362,697 to 1,364,055
_06110
AO353_06115: AO353_06115 - adenosine deaminase, at 1,364,209 to 1,365,162
_06115
Position (kb)
1362
1363
1364
1365 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1361.702 kb on + strand at 1361.703 kb on - strand at 1361.703 kb on - strand at 1361.726 kb on + strand at 1361.763 kb on + strand at 1361.763 kb on + strand at 1361.763 kb on + strand at 1361.764 kb on - strand at 1361.764 kb on - strand at 1361.764 kb on - strand at 1361.764 kb on - strand at 1361.785 kb on + strand at 1361.785 kb on + strand at 1361.786 kb on - strand at 1361.790 kb on + strand at 1361.791 kb on - strand at 1361.887 kb on + strand, within AO353_06105 at 1361.928 kb on + strand, within AO353_06105 at 1362.162 kb on + strand, within AO353_06105 at 1362.162 kb on + strand, within AO353_06105 at 1362.162 kb on + strand, within AO353_06105 at 1362.162 kb on + strand, within AO353_06105 at 1362.163 kb on - strand, within AO353_06105 at 1362.163 kb on - strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.227 kb on + strand, within AO353_06105 at 1362.228 kb on - strand, within AO353_06105 at 1362.228 kb on - strand, within AO353_06105 at 1362.228 kb on - strand, within AO353_06105 at 1362.228 kb on - strand, within AO353_06105 at 1362.228 kb on - strand, within AO353_06105 at 1362.228 kb on - strand, within AO353_06105 at 1362.228 kb on - strand, within AO353_06105 at 1362.228 kb on - strand, within AO353_06105 at 1362.228 kb on - strand, within AO353_06105 at 1362.407 kb on + strand at 1362.408 kb on - strand at 1362.408 kb on - strand at 1362.464 kb on + strand at 1362.519 kb on + strand at 1362.519 kb on + strand at 1362.520 kb on - strand at 1362.520 kb on - strand at 1362.520 kb on - strand at 1362.520 kb on - strand at 1362.520 kb on - strand at 1362.520 kb on - strand at 1362.520 kb on - strand at 1362.523 kb on - strand at 1362.523 kb on - strand at 1362.540 kb on - strand at 1362.556 kb on - strand at 1362.556 kb on - strand at 1362.556 kb on - strand at 1362.556 kb on - strand at 1362.556 kb on - strand at 1362.577 kb on + strand at 1362.577 kb on + strand at 1362.600 kb on + strand at 1362.600 kb on + strand at 1362.600 kb on + strand at 1362.601 kb on - strand at 1362.601 kb on - strand at 1362.711 kb on + strand at 1362.712 kb on - strand at 1362.720 kb on - strand at 1362.803 kb on + strand at 1362.803 kb on + strand at 1362.804 kb on - strand at 1362.904 kb on + strand, within AO353_06110 at 1362.904 kb on + strand, within AO353_06110 at 1362.905 kb on - strand, within AO353_06110 at 1362.905 kb on - strand, within AO353_06110 at 1362.905 kb on - strand, within AO353_06110 at 1362.905 kb on - strand, within AO353_06110 at 1362.905 kb on - strand, within AO353_06110 at 1362.905 kb on - strand, within AO353_06110 at 1362.905 kb on - strand, within AO353_06110 at 1363.078 kb on + strand, within AO353_06110 at 1363.078 kb on + strand, within AO353_06110 at 1363.078 kb on + strand, within AO353_06110 at 1363.078 kb on + strand, within AO353_06110 at 1363.078 kb on + strand, within AO353_06110 at 1363.078 kb on + strand, within AO353_06110 at 1363.078 kb on + strand, within AO353_06110 at 1363.078 kb on + strand, within AO353_06110 at 1363.079 kb on - strand, within AO353_06110 at 1363.079 kb on - strand, within AO353_06110 at 1363.079 kb on - strand, within AO353_06110 at 1363.079 kb on - strand, within AO353_06110 at 1363.079 kb on - strand, within AO353_06110 at 1363.079 kb on - strand, within AO353_06110 at 1363.079 kb on - strand, within AO353_06110 at 1363.079 kb on - strand, within AO353_06110 at 1363.079 kb on - strand, within AO353_06110 at 1363.143 kb on + strand, within AO353_06110 at 1363.268 kb on - strand, within AO353_06110 at 1363.462 kb on + strand, within AO353_06110 at 1363.463 kb on - strand, within AO353_06110 at 1363.717 kb on + strand, within AO353_06110 at 1363.717 kb on + strand, within AO353_06110 at 1363.718 kb on - strand, within AO353_06110 at 1363.718 kb on - strand, within AO353_06110 at 1363.718 kb on - strand, within AO353_06110 at 1363.718 kb on - strand, within AO353_06110 at 1364.069 kb on + strand at 1364.069 kb on + strand at 1364.069 kb on + strand at 1364.069 kb on + strand at 1364.069 kb on + strand at 1364.069 kb on + strand at 1364.069 kb on + strand at 1364.070 kb on - strand at 1364.070 kb on - strand at 1364.070 kb on - strand at 1364.070 kb on - strand at 1364.070 kb on - strand at 1364.070 kb on - strand at 1364.070 kb on - strand at 1364.070 kb on - strand at 1364.091 kb on + strand at 1364.091 kb on + strand at 1364.091 kb on + strand at 1364.091 kb on + strand at 1364.091 kb on + strand at 1364.091 kb on + strand at 1364.092 kb on - strand at 1364.092 kb on - strand at 1364.092 kb on - strand at 1364.092 kb on - strand at 1364.092 kb on - strand at 1364.092 kb on - strand at 1364.113 kb on - strand at 1364.150 kb on + strand at 1364.150 kb on + strand at 1364.150 kb on + strand at 1364.151 kb on - strand at 1364.151 kb on - strand at 1364.160 kb on + strand at 1364.160 kb on + strand at 1364.160 kb on + strand at 1364.160 kb on + strand at 1364.172 kb on + strand at 1364.172 kb on + strand at 1364.172 kb on + strand at 1364.172 kb on + strand at 1364.172 kb on + strand at 1364.172 kb on + strand at 1364.172 kb on + strand at 1364.173 kb on - strand at 1364.173 kb on - strand at 1364.173 kb on - strand at 1364.173 kb on - strand at 1364.173 kb on - strand at 1364.173 kb on - strand at 1364.173 kb on - strand at 1364.173 kb on - strand at 1364.184 kb on + strand at 1364.184 kb on + strand at 1364.184 kb on + strand at 1364.185 kb on - strand at 1364.185 kb on - strand at 1364.185 kb on - strand at 1364.185 kb on - strand at 1364.190 kb on + strand at 1364.190 kb on + strand at 1364.190 kb on + strand at 1364.191 kb on - strand at 1364.191 kb on - strand at 1364.191 kb on - strand at 1364.191 kb on - strand at 1364.208 kb on + strand at 1364.208 kb on + strand at 1364.208 kb on + strand at 1364.208 kb on + strand at 1364.208 kb on + strand at 1364.208 kb on + strand at 1364.208 kb on + strand at 1364.208 kb on + strand at 1364.208 kb on + strand at 1364.209 kb on - strand at 1364.209 kb on - strand at 1364.209 kb on - strand at 1364.209 kb on - strand at 1364.209 kb on - strand at 1364.209 kb on - strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.212 kb on + strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.213 kb on - strand at 1364.214 kb on - strand at 1364.353 kb on + strand, within AO353_06115 at 1364.353 kb on + strand, within AO353_06115 at 1364.353 kb on + strand, within AO353_06115 at 1364.353 kb on + strand, within AO353_06115 at 1364.353 kb on + strand, within AO353_06115 at 1364.354 kb on - strand, within AO353_06115 at 1364.354 kb on - strand, within AO353_06115 at 1364.354 kb on - strand, within AO353_06115 at 1364.389 kb on + strand, within AO353_06115 at 1364.389 kb on + strand, within AO353_06115 at 1364.389 kb on + strand, within AO353_06115 at 1364.389 kb on + strand, within AO353_06115 at 1364.389 kb on + strand, within AO353_06115 at 1364.389 kb on + strand, within AO353_06115 at 1364.390 kb on - strand, within AO353_06115 at 1364.390 kb on - strand, within AO353_06115 at 1364.390 kb on - strand, within AO353_06115 at 1364.390 kb on - strand, within AO353_06115 at 1364.390 kb on - strand, within AO353_06115 at 1364.390 kb on - strand, within AO353_06115 at 1364.431 kb on + strand, within AO353_06115 at 1364.431 kb on + strand, within AO353_06115 at 1364.432 kb on - strand, within AO353_06115 at 1364.432 kb on - strand, within AO353_06115 at 1364.449 kb on + strand, within AO353_06115 at 1364.449 kb on + strand, within AO353_06115 at 1364.450 kb on - strand, within AO353_06115 at 1364.815 kb on + strand, within AO353_06115 at 1364.815 kb on + strand, within AO353_06115 at 1364.816 kb on - strand, within AO353_06115 at 1364.816 kb on - strand, within AO353_06115 at 1364.816 kb on - strand, within AO353_06115 at 1364.853 kb on + strand, within AO353_06115 at 1365.018 kb on + strand, within AO353_06115 at 1365.043 kb on + strand, within AO353_06115 at 1365.043 kb on + strand, within AO353_06115 at 1365.043 kb on + strand, within AO353_06115 at 1365.043 kb on + strand, within AO353_06115 at 1365.043 kb on + strand, within AO353_06115 at 1365.044 kb on - strand, within AO353_06115 at 1365.055 kb on + strand, within AO353_06115 at 1365.055 kb on + strand, within AO353_06115 at 1365.055 kb on + strand, within AO353_06115 at 1365.055 kb on + strand, within AO353_06115
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 1,361,702 + +0.2 1,361,703 - -0.3 1,361,703 - +0.5 1,361,726 + +0.8 1,361,763 + -1.8 1,361,763 + +0.6 1,361,763 + +0.5 1,361,764 - +0.4 1,361,764 - -0.2 1,361,764 - -0.6 1,361,764 - -0.6 1,361,785 + -1.4 1,361,785 + -1.3 1,361,786 - +1.3 1,361,790 + -0.4 1,361,791 - +0.4 1,361,887 + AO353_06105 0.16 +0.5 1,361,928 + AO353_06105 0.22 -0.6 1,362,162 + AO353_06105 0.56 -1.5 1,362,162 + AO353_06105 0.56 -0.7 1,362,162 + AO353_06105 0.56 +1.0 1,362,162 + AO353_06105 0.56 +1.0 1,362,163 - AO353_06105 0.56 +1.8 1,362,163 - AO353_06105 0.56 -0.4 1,362,227 + AO353_06105 0.65 +0.3 1,362,227 + AO353_06105 0.65 +0.2 1,362,227 + AO353_06105 0.65 -0.8 1,362,227 + AO353_06105 0.65 +0.1 1,362,227 + AO353_06105 0.65 +1.3 1,362,227 + AO353_06105 0.65 -0.4 1,362,227 + AO353_06105 0.65 +2.5 1,362,227 + AO353_06105 0.65 +1.7 1,362,227 + AO353_06105 0.65 -1.0 1,362,227 + AO353_06105 0.65 +0.6 1,362,227 + AO353_06105 0.65 +1.1 1,362,227 + AO353_06105 0.65 -1.3 1,362,227 + AO353_06105 0.65 +0.1 1,362,227 + AO353_06105 0.65 -0.9 1,362,228 - AO353_06105 0.65 +0.2 1,362,228 - AO353_06105 0.65 -1.0 1,362,228 - AO353_06105 0.65 -1.2 1,362,228 - AO353_06105 0.65 -1.2 1,362,228 - AO353_06105 0.65 -1.5 1,362,228 - AO353_06105 0.65 -1.9 1,362,228 - AO353_06105 0.65 +1.7 1,362,228 - AO353_06105 0.65 -1.2 1,362,228 - AO353_06105 0.65 +0.7 1,362,407 + +1.6 1,362,408 - +0.7 1,362,408 - -0.9 1,362,464 + +1.4 1,362,519 + +0.2 1,362,519 + -1.4 1,362,520 - -2.7 1,362,520 - +1.0 1,362,520 - +0.2 1,362,520 - -0.8 1,362,520 - +0.2 1,362,520 - +1.9 1,362,520 - -1.8 1,362,523 - -1.1 1,362,523 - +3.4 1,362,540 - -0.6 1,362,556 - -0.6 1,362,556 - +0.4 1,362,556 - -1.3 1,362,556 - -1.4 1,362,556 - -1.0 1,362,577 + -0.2 1,362,577 + +0.5 1,362,600 + +0.3 1,362,600 + -0.6 1,362,600 + -0.6 1,362,601 - +2.4 1,362,601 - +0.7 1,362,711 + -0.4 1,362,712 - +0.4 1,362,720 - +0.2 1,362,803 + -1.6 1,362,803 + -1.4 1,362,804 - +1.7 1,362,904 + AO353_06110 0.15 +0.6 1,362,904 + AO353_06110 0.15 -2.4 1,362,905 - AO353_06110 0.15 -1.4 1,362,905 - AO353_06110 0.15 -0.1 1,362,905 - AO353_06110 0.15 -0.2 1,362,905 - AO353_06110 0.15 +1.4 1,362,905 - AO353_06110 0.15 -0.2 1,362,905 - AO353_06110 0.15 -2.0 1,362,905 - AO353_06110 0.15 +0.2 1,363,078 + AO353_06110 0.28 +0.7 1,363,078 + AO353_06110 0.28 -0.6 1,363,078 + AO353_06110 0.28 +0.1 1,363,078 + AO353_06110 0.28 +0.2 1,363,078 + AO353_06110 0.28 +1.7 1,363,078 + AO353_06110 0.28 +0.1 1,363,078 + AO353_06110 0.28 +1.1 1,363,078 + AO353_06110 0.28 -0.6 1,363,079 - AO353_06110 0.28 -1.0 1,363,079 - AO353_06110 0.28 +0.4 1,363,079 - AO353_06110 0.28 -0.2 1,363,079 - AO353_06110 0.28 +0.5 1,363,079 - AO353_06110 0.28 -1.6 1,363,079 - AO353_06110 0.28 -0.6 1,363,079 - AO353_06110 0.28 -1.3 1,363,079 - AO353_06110 0.28 +0.5 1,363,079 - AO353_06110 0.28 +0.4 1,363,143 + AO353_06110 0.33 +0.4 1,363,268 - AO353_06110 0.42 +1.2 1,363,462 + AO353_06110 0.56 +3.4 1,363,463 - AO353_06110 0.56 +0.4 1,363,717 + AO353_06110 0.75 -0.9 1,363,717 + AO353_06110 0.75 +2.0 1,363,718 - AO353_06110 0.75 -2.2 1,363,718 - AO353_06110 0.75 +1.1 1,363,718 - AO353_06110 0.75 -0.4 1,363,718 - AO353_06110 0.75 +0.4 1,364,069 + +1.1 1,364,069 + -0.7 1,364,069 + -0.1 1,364,069 + +0.8 1,364,069 + -0.9 1,364,069 + +1.0 1,364,069 + -2.1 1,364,070 - +0.8 1,364,070 - -1.2 1,364,070 - -0.8 1,364,070 - -0.8 1,364,070 - +1.4 1,364,070 - -0.3 1,364,070 - -0.2 1,364,070 - -0.1 1,364,091 + +0.4 1,364,091 + -2.1 1,364,091 + +1.0 1,364,091 + -0.8 1,364,091 + +0.1 1,364,091 + -0.4 1,364,092 - +1.4 1,364,092 - +0.3 1,364,092 - +0.2 1,364,092 - +0.1 1,364,092 - +0.2 1,364,092 - +1.6 1,364,113 - +1.7 1,364,150 + +1.2 1,364,150 + +0.1 1,364,150 + -2.1 1,364,151 - +1.3 1,364,151 - -0.8 1,364,160 + +0.8 1,364,160 + +0.1 1,364,160 + -0.1 1,364,160 + -0.4 1,364,172 + +1.3 1,364,172 + +0.8 1,364,172 + -1.5 1,364,172 + +1.1 1,364,172 + +0.3 1,364,172 + +0.8 1,364,172 + -1.6 1,364,173 - +0.4 1,364,173 - -1.7 1,364,173 - +1.2 1,364,173 - -0.9 1,364,173 - -1.1 1,364,173 - +1.8 1,364,173 - -0.4 1,364,173 - -0.2 1,364,184 + +1.8 1,364,184 + -0.2 1,364,184 + -0.2 1,364,185 - +1.1 1,364,185 - -0.4 1,364,185 - +0.3 1,364,185 - -0.2 1,364,190 + -1.1 1,364,190 + +0.8 1,364,190 + -0.9 1,364,191 - -0.8 1,364,191 - -0.9 1,364,191 - -0.5 1,364,191 - +0.2 1,364,208 + -1.5 1,364,208 + +0.8 1,364,208 + -1.7 1,364,208 + -0.6 1,364,208 + -0.3 1,364,208 + +0.1 1,364,208 + -0.6 1,364,208 + +0.1 1,364,208 + +0.4 1,364,209 - +0.3 1,364,209 - +0.8 1,364,209 - -0.4 1,364,209 - -0.4 1,364,209 - +0.1 1,364,209 - +1.4 1,364,212 + -0.3 1,364,212 + -0.6 1,364,212 + -1.4 1,364,212 + -0.1 1,364,212 + -0.9 1,364,212 + -1.7 1,364,212 + -0.4 1,364,212 + +1.1 1,364,212 + -1.1 1,364,212 + +0.7 1,364,212 + +0.4 1,364,212 + +0.4 1,364,212 + -1.1 1,364,212 + +1.0 1,364,212 + +1.4 1,364,212 + +0.7 1,364,213 - -2.1 1,364,213 - -1.9 1,364,213 - +0.2 1,364,213 - -0.9 1,364,213 - +0.7 1,364,213 - -1.6 1,364,213 - +0.1 1,364,213 - -1.1 1,364,213 - +0.6 1,364,213 - -0.9 1,364,213 - +0.4 1,364,213 - +0.8 1,364,213 - +0.6 1,364,213 - -0.9 1,364,213 - +0.9 1,364,213 - -0.7 1,364,214 - +0.5 1,364,353 + AO353_06115 0.15 -0.2 1,364,353 + AO353_06115 0.15 -1.6 1,364,353 + AO353_06115 0.15 -0.5 1,364,353 + AO353_06115 0.15 -1.1 1,364,353 + AO353_06115 0.15 +0.6 1,364,354 - AO353_06115 0.15 +0.7 1,364,354 - AO353_06115 0.15 +0.9 1,364,354 - AO353_06115 0.15 +1.7 1,364,389 + AO353_06115 0.19 -0.9 1,364,389 + AO353_06115 0.19 +0.2 1,364,389 + AO353_06115 0.19 -0.2 1,364,389 + AO353_06115 0.19 -0.4 1,364,389 + AO353_06115 0.19 -1.8 1,364,389 + AO353_06115 0.19 -1.5 1,364,390 - AO353_06115 0.19 +1.6 1,364,390 - AO353_06115 0.19 -1.1 1,364,390 - AO353_06115 0.19 -0.8 1,364,390 - AO353_06115 0.19 +2.2 1,364,390 - AO353_06115 0.19 -0.1 1,364,390 - AO353_06115 0.19 -1.8 1,364,431 + AO353_06115 0.23 -0.7 1,364,431 + AO353_06115 0.23 -0.4 1,364,432 - AO353_06115 0.23 +0.3 1,364,432 - AO353_06115 0.23 +0.9 1,364,449 + AO353_06115 0.25 -0.2 1,364,449 + AO353_06115 0.25 +1.2 1,364,450 - AO353_06115 0.25 -1.8 1,364,815 + AO353_06115 0.64 +0.1 1,364,815 + AO353_06115 0.64 -2.4 1,364,816 - AO353_06115 0.64 +1.2 1,364,816 - AO353_06115 0.64 +0.1 1,364,816 - AO353_06115 0.64 +1.5 1,364,853 + AO353_06115 0.68 +0.8 1,365,018 + AO353_06115 0.85 +1.2 1,365,043 + AO353_06115 0.87 -0.9 1,365,043 + AO353_06115 0.87 -1.8 1,365,043 + AO353_06115 0.87 -2.0 1,365,043 + AO353_06115 0.87 +2.4 1,365,043 + AO353_06115 0.87 -0.4 1,365,044 - AO353_06115 0.88 -0.2 1,365,055 + AO353_06115 0.89 +0.0 1,365,055 + AO353_06115 0.89 -1.1 1,365,055 + AO353_06115 0.89 +2.7 1,365,055 + AO353_06115 0.89 -2.2
Or see this region's nucleotide sequence