Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05650

Experiment: Lomefloxacin 0.001 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_05645 and AO353_05650 are separated by 297 nucleotidesAO353_05650 and AO353_05655 are separated by 102 nucleotidesAO353_05655 and AO353_05660 are separated by 248 nucleotides AO353_05645: AO353_05645 - molecular chaperone DnaJ, at 1,247,363 to 1,248,487 _05645 AO353_05650: AO353_05650 - molecular chaperone DnaK, at 1,248,785 to 1,250,701 _05650 AO353_05655: AO353_05655 - molecular chaperone GrpE, at 1,250,804 to 1,251,370 _05655 AO353_05660: AO353_05660 - DNA repair protein RecN, at 1,251,619 to 1,253,292 _05660 Position (kb) 1248 1249 1250 1251Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1248.503 kb on - strandat 1248.504 kb on - strandat 1248.504 kb on - strandat 1248.557 kb on - strandat 1248.743 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.787 kb on - strandat 1248.895 kb on - strandat 1250.750 kb on - strandat 1250.766 kb on - strandat 1250.766 kb on - strandat 1250.766 kb on - strandat 1250.766 kb on - strandat 1250.766 kb on - strandat 1250.781 kb on - strandat 1250.781 kb on - strandat 1250.781 kb on - strandat 1250.781 kb on - strandat 1250.781 kb on - strandat 1250.781 kb on - strandat 1250.781 kb on - strandat 1250.781 kb on - strandat 1250.781 kb on - strandat 1251.424 kb on - strandat 1251.424 kb on - strandat 1251.424 kb on - strandat 1251.426 kb on - strandat 1251.473 kb on + strandat 1251.473 kb on + strandat 1251.476 kb on + strandat 1251.476 kb on + strandat 1251.477 kb on - strandat 1251.477 kb on - strandat 1251.477 kb on - strandat 1251.477 kb on - strandat 1251.498 kb on + strandat 1251.498 kb on + strandat 1251.498 kb on + strandat 1251.498 kb on + strandat 1251.498 kb on + strandat 1251.498 kb on + strandat 1251.498 kb on + strandat 1251.498 kb on + strandat 1251.498 kb on + strandat 1251.498 kb on + strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.499 kb on - strandat 1251.516 kb on - strandat 1251.546 kb on + strandat 1251.584 kb on + strandat 1251.618 kb on + strandat 1251.618 kb on + strandat 1251.618 kb on + strandat 1251.618 kb on + strandat 1251.618 kb on + strandat 1251.618 kb on + strandat 1251.618 kb on + strandat 1251.618 kb on + strandat 1251.618 kb on + strandat 1251.618 kb on + strandat 1251.619 kb on - strandat 1251.619 kb on - strandat 1251.619 kb on - strandat 1251.619 kb on - strandat 1251.619 kb on - strandat 1251.619 kb on - strandat 1251.619 kb on - strandat 1251.638 kb on + strandat 1251.638 kb on + strandat 1251.638 kb on + strandat 1251.638 kb on + strandat 1251.639 kb on - strandat 1251.639 kb on - strandat 1251.639 kb on - strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.642 kb on + strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.643 kb on - strandat 1251.646 kb on + strandat 1251.647 kb on - strandat 1251.647 kb on - strandat 1251.647 kb on - strandat 1251.647 kb on - strandat 1251.647 kb on - strandat 1251.647 kb on - strandat 1251.647 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
remove
1,248,503 - -0.4
1,248,504 - -1.2
1,248,504 - -0.6
1,248,557 - +1.3
1,248,743 - +1.2
1,248,787 - +0.6
1,248,787 - +0.3
1,248,787 - -1.1
1,248,787 - +2.9
1,248,787 - +1.7
1,248,787 - +0.5
1,248,787 - +0.1
1,248,787 - +1.3
1,248,895 - -0.1
1,250,750 - -1.4
1,250,766 - +0.4
1,250,766 - +1.4
1,250,766 - +1.4
1,250,766 - -0.2
1,250,766 - -2.7
1,250,781 - -2.6
1,250,781 - +0.4
1,250,781 - +1.1
1,250,781 - -0.9
1,250,781 - +0.1
1,250,781 - +1.1
1,250,781 - +1.7
1,250,781 - -0.8
1,250,781 - +0.2
1,251,424 - -0.8
1,251,424 - +1.7
1,251,424 - +0.3
1,251,426 - -2.1
1,251,473 + +1.9
1,251,473 + +0.2
1,251,476 + +1.5
1,251,476 + +1.0
1,251,477 - +0.0
1,251,477 - +1.4
1,251,477 - -1.1
1,251,477 - -0.9
1,251,498 + +0.1
1,251,498 + -0.1
1,251,498 + -1.5
1,251,498 + -0.4
1,251,498 + -1.2
1,251,498 + -0.3
1,251,498 + -1.7
1,251,498 + -0.1
1,251,498 + +1.1
1,251,498 + +0.6
1,251,499 - +1.4
1,251,499 - -1.1
1,251,499 - -2.1
1,251,499 - +0.9
1,251,499 - +2.4
1,251,499 - -0.4
1,251,499 - -1.3
1,251,499 - +1.3
1,251,499 - -3.3
1,251,499 - +0.1
1,251,499 - -1.6
1,251,499 - -0.4
1,251,499 - -0.6
1,251,499 - -0.6
1,251,499 - +0.3
1,251,499 - -2.1
1,251,499 - -0.1
1,251,499 - +0.6
1,251,516 - +0.0
1,251,546 + +0.3
1,251,584 + -0.9
1,251,618 + -1.7
1,251,618 + -0.8
1,251,618 + -1.2
1,251,618 + -0.5
1,251,618 + -0.9
1,251,618 + -0.8
1,251,618 + -2.0
1,251,618 + -1.9
1,251,618 + -0.8
1,251,618 + -1.9
1,251,619 - +1.4
1,251,619 - -2.1
1,251,619 - +0.8
1,251,619 - -0.6
1,251,619 - -1.5
1,251,619 - +0.4
1,251,619 - -0.6
1,251,638 + -1.8
1,251,638 + -1.1
1,251,638 + -1.8
1,251,638 + -1.9
1,251,639 - -1.6
1,251,639 - -3.3
1,251,639 - -1.1
1,251,642 + -1.5
1,251,642 + -1.3
1,251,642 + +0.1
1,251,642 + +1.4
1,251,642 + +2.0
1,251,642 + -0.8
1,251,642 + +0.1
1,251,642 + -1.2
1,251,642 + -3.3
1,251,642 + -0.3
1,251,642 + -3.0
1,251,642 + +0.1
1,251,642 + -1.3
1,251,642 + -1.4
1,251,642 + -0.9
1,251,642 + -1.3
1,251,642 + -1.4
1,251,642 + -2.3
1,251,642 + -0.6
1,251,642 + -0.6
1,251,642 + -1.9
1,251,642 + -1.2
1,251,642 + -1.7
1,251,642 + -1.9
1,251,642 + -1.2
1,251,643 - -2.1
1,251,643 - -1.1
1,251,643 - -1.8
1,251,643 - +0.4
1,251,643 - -2.1
1,251,643 - -0.4
1,251,643 - -1.7
1,251,643 - -1.8
1,251,643 - -0.5
1,251,643 - -1.2
1,251,643 - -2.0
1,251,643 - -1.5
1,251,643 - -1.7
1,251,643 - -0.6
1,251,643 - +0.1
1,251,643 - -2.4
1,251,643 - -1.6
1,251,643 - -2.4
1,251,646 + -1.5
1,251,647 - -0.2
1,251,647 - -1.1
1,251,647 - -2.3
1,251,647 - -1.9
1,251,647 - -0.6
1,251,647 - -1.9
1,251,647 - -1.7

Or see this region's nucleotide sequence