Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05095

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05090 and AO353_05095 are separated by 141 nucleotidesAO353_05095 and AO353_05100 are separated by 12 nucleotidesAO353_05100 and AO353_05105 are separated by 162 nucleotides AO353_05090: AO353_05090 - 2-alkenal reductase, at 1,123,470 to 1,124,624 _05090 AO353_05095: AO353_05095 - TonB-dependent receptor, at 1,124,766 to 1,126,871 _05095 AO353_05100: AO353_05100 - nickel ABC transporter substrate-binding protein, at 1,126,884 to 1,127,612 _05100 AO353_05105: AO353_05105 - histidinol-phosphate aminotransferase, at 1,127,775 to 1,128,827 _05105 Position (kb) 1124 1125 1126 1127Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1123.818 kb on + strand, within AO353_05090at 1123.819 kb on - strand, within AO353_05090at 1124.103 kb on + strand, within AO353_05090at 1124.103 kb on + strand, within AO353_05090at 1124.103 kb on + strand, within AO353_05090at 1124.103 kb on + strand, within AO353_05090at 1124.103 kb on + strand, within AO353_05090at 1124.103 kb on + strand, within AO353_05090at 1124.103 kb on + strand, within AO353_05090at 1124.104 kb on - strand, within AO353_05090at 1124.104 kb on - strand, within AO353_05090at 1124.104 kb on - strand, within AO353_05090at 1124.104 kb on - strand, within AO353_05090at 1124.104 kb on - strand, within AO353_05090at 1124.165 kb on - strand, within AO353_05090at 1124.359 kb on - strand, within AO353_05090at 1124.622 kb on + strandat 1124.622 kb on + strandat 1124.622 kb on + strandat 1124.622 kb on + strandat 1124.622 kb on + strandat 1124.622 kb on + strandat 1124.622 kb on + strandat 1124.622 kb on + strandat 1124.622 kb on + strandat 1124.623 kb on - strandat 1124.623 kb on - strandat 1124.623 kb on - strandat 1124.623 kb on - strandat 1124.623 kb on - strandat 1124.623 kb on - strandat 1124.623 kb on - strandat 1124.623 kb on - strandat 1124.630 kb on + strandat 1124.631 kb on - strandat 1124.631 kb on - strandat 1124.657 kb on + strandat 1124.658 kb on - strandat 1124.679 kb on + strandat 1124.679 kb on + strandat 1124.679 kb on + strandat 1124.679 kb on + strandat 1124.680 kb on - strandat 1124.680 kb on - strandat 1124.680 kb on - strandat 1124.777 kb on + strandat 1124.778 kb on - strandat 1124.883 kb on + strandat 1125.093 kb on + strand, within AO353_05095at 1125.093 kb on + strand, within AO353_05095at 1125.093 kb on + strand, within AO353_05095at 1125.093 kb on + strand, within AO353_05095at 1125.093 kb on + strand, within AO353_05095at 1125.093 kb on + strand, within AO353_05095at 1125.093 kb on + strand, within AO353_05095at 1125.093 kb on + strand, within AO353_05095at 1125.093 kb on + strand, within AO353_05095at 1125.093 kb on + strand, within AO353_05095at 1125.093 kb on + strand, within AO353_05095at 1125.094 kb on - strand, within AO353_05095at 1125.094 kb on - strand, within AO353_05095at 1125.094 kb on - strand, within AO353_05095at 1125.099 kb on + strand, within AO353_05095at 1125.099 kb on + strand, within AO353_05095at 1125.099 kb on + strand, within AO353_05095at 1125.099 kb on + strand, within AO353_05095at 1125.099 kb on + strand, within AO353_05095at 1125.099 kb on + strand, within AO353_05095at 1125.100 kb on - strand, within AO353_05095at 1125.100 kb on - strand, within AO353_05095at 1125.100 kb on - strand, within AO353_05095at 1125.100 kb on - strand, within AO353_05095at 1125.132 kb on + strand, within AO353_05095at 1125.132 kb on + strand, within AO353_05095at 1125.133 kb on - strand, within AO353_05095at 1125.133 kb on - strand, within AO353_05095at 1125.133 kb on - strand, within AO353_05095at 1125.133 kb on - strand, within AO353_05095at 1125.133 kb on - strand, within AO353_05095at 1125.133 kb on - strand, within AO353_05095at 1125.254 kb on + strand, within AO353_05095at 1125.702 kb on + strand, within AO353_05095at 1125.703 kb on - strand, within AO353_05095at 1125.703 kb on - strand, within AO353_05095at 1125.713 kb on + strand, within AO353_05095at 1125.713 kb on + strand, within AO353_05095at 1125.713 kb on + strand, within AO353_05095at 1125.713 kb on + strand, within AO353_05095at 1125.713 kb on + strand, within AO353_05095at 1125.937 kb on - strand, within AO353_05095at 1125.947 kb on + strand, within AO353_05095at 1125.948 kb on - strand, within AO353_05095at 1125.951 kb on + strand, within AO353_05095at 1125.951 kb on + strand, within AO353_05095at 1125.951 kb on + strand, within AO353_05095at 1125.951 kb on + strand, within AO353_05095at 1125.951 kb on + strand, within AO353_05095at 1125.951 kb on + strand, within AO353_05095at 1125.951 kb on + strand, within AO353_05095at 1125.952 kb on - strand, within AO353_05095at 1125.952 kb on - strand, within AO353_05095at 1125.952 kb on - strand, within AO353_05095at 1125.952 kb on - strand, within AO353_05095at 1125.952 kb on - strand, within AO353_05095at 1125.952 kb on - strand, within AO353_05095at 1125.952 kb on - strand, within AO353_05095at 1125.963 kb on + strand, within AO353_05095at 1125.963 kb on + strand, within AO353_05095at 1125.963 kb on + strand, within AO353_05095at 1126.186 kb on - strand, within AO353_05095at 1126.186 kb on - strand, within AO353_05095at 1126.186 kb on - strand, within AO353_05095at 1126.296 kb on + strand, within AO353_05095at 1126.296 kb on + strand, within AO353_05095at 1126.500 kb on + strand, within AO353_05095at 1126.500 kb on + strand, within AO353_05095at 1126.500 kb on + strand, within AO353_05095at 1126.501 kb on - strand, within AO353_05095at 1126.501 kb on - strand, within AO353_05095at 1126.501 kb on - strand, within AO353_05095at 1126.501 kb on - strand, within AO353_05095at 1126.644 kb on + strand, within AO353_05095at 1126.644 kb on + strand, within AO353_05095at 1126.644 kb on + strand, within AO353_05095at 1126.645 kb on - strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.650 kb on + strand, within AO353_05095at 1126.651 kb on - strand, within AO353_05095at 1126.651 kb on - strand, within AO353_05095at 1126.651 kb on - strand, within AO353_05095at 1126.651 kb on - strand, within AO353_05095at 1126.651 kb on - strand, within AO353_05095at 1126.651 kb on - strand, within AO353_05095at 1126.702 kb on - strandat 1126.702 kb on - strandat 1126.728 kb on + strandat 1126.728 kb on + strandat 1126.728 kb on + strandat 1126.728 kb on + strandat 1126.729 kb on - strandat 1126.729 kb on - strandat 1126.729 kb on - strandat 1126.729 kb on - strandat 1126.788 kb on + strandat 1126.788 kb on + strandat 1126.789 kb on - strandat 1126.789 kb on - strandat 1126.789 kb on - strandat 1126.789 kb on - strandat 1126.803 kb on + strandat 1126.804 kb on - strandat 1126.812 kb on + strandat 1126.812 kb on + strandat 1126.812 kb on + strandat 1126.812 kb on + strandat 1126.812 kb on + strandat 1126.812 kb on + strandat 1126.813 kb on - strandat 1126.813 kb on - strandat 1126.813 kb on - strandat 1126.869 kb on + strandat 1126.869 kb on + strandat 1126.869 kb on + strandat 1126.870 kb on - strandat 1126.999 kb on - strand, within AO353_05100at 1126.999 kb on - strand, within AO353_05100at 1127.092 kb on + strand, within AO353_05100at 1127.092 kb on + strand, within AO353_05100at 1127.092 kb on + strand, within AO353_05100at 1127.093 kb on - strand, within AO353_05100at 1127.093 kb on - strand, within AO353_05100at 1127.093 kb on - strand, within AO353_05100at 1127.093 kb on - strand, within AO353_05100at 1127.256 kb on + strand, within AO353_05100at 1127.257 kb on - strand, within AO353_05100at 1127.272 kb on - strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.290 kb on + strand, within AO353_05100at 1127.291 kb on - strand, within AO353_05100at 1127.291 kb on - strand, within AO353_05100at 1127.291 kb on - strand, within AO353_05100at 1127.291 kb on - strand, within AO353_05100at 1127.291 kb on - strand, within AO353_05100at 1127.291 kb on - strand, within AO353_05100at 1127.450 kb on + strand, within AO353_05100at 1127.610 kb on + strandat 1127.611 kb on - strandat 1127.670 kb on + strandat 1127.679 kb on + strandat 1127.679 kb on + strandat 1127.680 kb on - strandat 1127.680 kb on - strandat 1127.717 kb on - strandat 1127.717 kb on - strandat 1127.823 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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1,123,818 + AO353_05090 0.30 -1.9
1,123,819 - AO353_05090 0.30 -0.8
1,124,103 + AO353_05090 0.55 +0.4
1,124,103 + AO353_05090 0.55 -1.1
1,124,103 + AO353_05090 0.55 -0.5
1,124,103 + AO353_05090 0.55 +0.2
1,124,103 + AO353_05090 0.55 +0.7
1,124,103 + AO353_05090 0.55 +2.1
1,124,103 + AO353_05090 0.55 -1.9
1,124,104 - AO353_05090 0.55 +0.7
1,124,104 - AO353_05090 0.55 +0.1
1,124,104 - AO353_05090 0.55 -0.6
1,124,104 - AO353_05090 0.55 -2.4
1,124,104 - AO353_05090 0.55 -0.3
1,124,165 - AO353_05090 0.60 -0.1
1,124,359 - AO353_05090 0.77 -0.1
1,124,622 + -1.1
1,124,622 + -1.9
1,124,622 + +0.8
1,124,622 + -0.4
1,124,622 + +2.4
1,124,622 + +0.3
1,124,622 + +1.0
1,124,622 + -0.9
1,124,622 + -1.0
1,124,623 - -0.4
1,124,623 - -0.0
1,124,623 - +1.6
1,124,623 - +1.4
1,124,623 - -0.4
1,124,623 - -0.8
1,124,623 - -0.2
1,124,623 - +0.8
1,124,630 + +0.6
1,124,631 - +2.1
1,124,631 - +0.6
1,124,657 + +0.2
1,124,658 - +2.4
1,124,679 + +0.1
1,124,679 + +0.9
1,124,679 + +1.3
1,124,679 + -0.8
1,124,680 - +0.6
1,124,680 - -0.8
1,124,680 - -1.3
1,124,777 + +0.9
1,124,778 - -1.2
1,124,883 + +0.4
1,125,093 + AO353_05095 0.16 -0.7
1,125,093 + AO353_05095 0.16 -0.6
1,125,093 + AO353_05095 0.16 +0.5
1,125,093 + AO353_05095 0.16 +0.1
1,125,093 + AO353_05095 0.16 +0.1
1,125,093 + AO353_05095 0.16 -0.3
1,125,093 + AO353_05095 0.16 +1.2
1,125,093 + AO353_05095 0.16 +1.5
1,125,093 + AO353_05095 0.16 -0.9
1,125,093 + AO353_05095 0.16 -0.8
1,125,093 + AO353_05095 0.16 +0.5
1,125,094 - AO353_05095 0.16 +1.7
1,125,094 - AO353_05095 0.16 -0.5
1,125,094 - AO353_05095 0.16 +0.1
1,125,099 + AO353_05095 0.16 +1.5
1,125,099 + AO353_05095 0.16 +1.4
1,125,099 + AO353_05095 0.16 -1.4
1,125,099 + AO353_05095 0.16 -0.6
1,125,099 + AO353_05095 0.16 +0.0
1,125,099 + AO353_05095 0.16 -1.1
1,125,100 - AO353_05095 0.16 +0.8
1,125,100 - AO353_05095 0.16 -0.1
1,125,100 - AO353_05095 0.16 +0.5
1,125,100 - AO353_05095 0.16 +1.4
1,125,132 + AO353_05095 0.17 -0.7
1,125,132 + AO353_05095 0.17 -0.4
1,125,133 - AO353_05095 0.17 -0.6
1,125,133 - AO353_05095 0.17 +0.2
1,125,133 - AO353_05095 0.17 +0.4
1,125,133 - AO353_05095 0.17 -0.7
1,125,133 - AO353_05095 0.17 -0.2
1,125,133 - AO353_05095 0.17 -1.1
1,125,254 + AO353_05095 0.23 -1.7
1,125,702 + AO353_05095 0.44 -1.3
1,125,703 - AO353_05095 0.44 -1.1
1,125,703 - AO353_05095 0.44 -0.9
1,125,713 + AO353_05095 0.45 +0.4
1,125,713 + AO353_05095 0.45 -1.8
1,125,713 + AO353_05095 0.45 +0.4
1,125,713 + AO353_05095 0.45 +1.3
1,125,713 + AO353_05095 0.45 +1.6
1,125,937 - AO353_05095 0.56 +0.9
1,125,947 + AO353_05095 0.56 -1.2
1,125,948 - AO353_05095 0.56 +1.2
1,125,951 + AO353_05095 0.56 +0.1
1,125,951 + AO353_05095 0.56 +0.0
1,125,951 + AO353_05095 0.56 +0.5
1,125,951 + AO353_05095 0.56 -0.9
1,125,951 + AO353_05095 0.56 +1.8
1,125,951 + AO353_05095 0.56 +0.1
1,125,951 + AO353_05095 0.56 -0.1
1,125,952 - AO353_05095 0.56 +0.6
1,125,952 - AO353_05095 0.56 -1.9
1,125,952 - AO353_05095 0.56 -0.5
1,125,952 - AO353_05095 0.56 +0.5
1,125,952 - AO353_05095 0.56 +3.0
1,125,952 - AO353_05095 0.56 +0.5
1,125,952 - AO353_05095 0.56 -0.6
1,125,963 + AO353_05095 0.57 +0.8
1,125,963 + AO353_05095 0.57 -0.6
1,125,963 + AO353_05095 0.57 -2.2
1,126,186 - AO353_05095 0.67 +2.3
1,126,186 - AO353_05095 0.67 +1.1
1,126,186 - AO353_05095 0.67 +0.9
1,126,296 + AO353_05095 0.73 +1.4
1,126,296 + AO353_05095 0.73 -1.3
1,126,500 + AO353_05095 0.82 -0.6
1,126,500 + AO353_05095 0.82 +1.1
1,126,500 + AO353_05095 0.82 -1.2
1,126,501 - AO353_05095 0.82 -2.1
1,126,501 - AO353_05095 0.82 +1.0
1,126,501 - AO353_05095 0.82 +0.8
1,126,501 - AO353_05095 0.82 +2.4
1,126,644 + AO353_05095 0.89 -0.6
1,126,644 + AO353_05095 0.89 -0.4
1,126,644 + AO353_05095 0.89 -2.1
1,126,645 - AO353_05095 0.89 +0.1
1,126,650 + AO353_05095 0.89 -0.2
1,126,650 + AO353_05095 0.89 -0.5
1,126,650 + AO353_05095 0.89 +1.5
1,126,650 + AO353_05095 0.89 +1.1
1,126,650 + AO353_05095 0.89 +0.1
1,126,650 + AO353_05095 0.89 -1.1
1,126,650 + AO353_05095 0.89 -0.4
1,126,650 + AO353_05095 0.89 -0.5
1,126,650 + AO353_05095 0.89 +0.9
1,126,650 + AO353_05095 0.89 -2.5
1,126,650 + AO353_05095 0.89 -0.7
1,126,650 + AO353_05095 0.89 -1.4
1,126,650 + AO353_05095 0.89 +0.2
1,126,650 + AO353_05095 0.89 -1.2
1,126,650 + AO353_05095 0.89 -2.3
1,126,650 + AO353_05095 0.89 +2.1
1,126,650 + AO353_05095 0.89 +1.1
1,126,651 - AO353_05095 0.90 +0.0
1,126,651 - AO353_05095 0.90 +1.0
1,126,651 - AO353_05095 0.90 -1.4
1,126,651 - AO353_05095 0.90 +0.7
1,126,651 - AO353_05095 0.90 +1.9
1,126,651 - AO353_05095 0.90 +2.1
1,126,702 - -1.4
1,126,702 - -1.2
1,126,728 + +0.6
1,126,728 + -1.5
1,126,728 + +0.9
1,126,728 + -0.4
1,126,729 - +1.4
1,126,729 - +0.4
1,126,729 - +0.5
1,126,729 - +0.5
1,126,788 + +0.9
1,126,788 + -0.3
1,126,789 - +1.4
1,126,789 - +1.1
1,126,789 - -0.8
1,126,789 - -0.5
1,126,803 + -0.9
1,126,804 - -0.6
1,126,812 + -0.9
1,126,812 + +0.5
1,126,812 + +0.5
1,126,812 + +1.4
1,126,812 + -0.5
1,126,812 + +0.1
1,126,813 - -0.4
1,126,813 - +0.2
1,126,813 - -0.8
1,126,869 + -1.4
1,126,869 + -0.5
1,126,869 + -1.5
1,126,870 - -1.6
1,126,999 - AO353_05100 0.16 +1.0
1,126,999 - AO353_05100 0.16 -0.7
1,127,092 + AO353_05100 0.29 -0.9
1,127,092 + AO353_05100 0.29 -0.5
1,127,092 + AO353_05100 0.29 -1.9
1,127,093 - AO353_05100 0.29 +0.3
1,127,093 - AO353_05100 0.29 -0.9
1,127,093 - AO353_05100 0.29 -1.4
1,127,093 - AO353_05100 0.29 +0.4
1,127,256 + AO353_05100 0.51 -2.4
1,127,257 - AO353_05100 0.51 +0.1
1,127,272 - AO353_05100 0.53 -0.9
1,127,290 + AO353_05100 0.56 -1.4
1,127,290 + AO353_05100 0.56 +2.2
1,127,290 + AO353_05100 0.56 +0.3
1,127,290 + AO353_05100 0.56 -1.7
1,127,290 + AO353_05100 0.56 +0.6
1,127,290 + AO353_05100 0.56 -1.8
1,127,290 + AO353_05100 0.56 +0.5
1,127,291 - AO353_05100 0.56 +1.2
1,127,291 - AO353_05100 0.56 +1.7
1,127,291 - AO353_05100 0.56 -0.7
1,127,291 - AO353_05100 0.56 -0.9
1,127,291 - AO353_05100 0.56 -0.8
1,127,291 - AO353_05100 0.56 -1.8
1,127,450 + AO353_05100 0.78 +0.1
1,127,610 + -1.1
1,127,611 - -1.2
1,127,670 + +1.7
1,127,679 + +1.2
1,127,679 + +1.4
1,127,680 - -0.4
1,127,680 - -0.4
1,127,717 - +1.3
1,127,717 - +0.6
1,127,823 - -0.2

Or see this region's nucleotide sequence