Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04535 and AO353_04540 are separated by 60 nucleotides AO353_04540 and AO353_04545 are separated by 7 nucleotides AO353_04545 and AO353_04550 are separated by 219 nucleotides
AO353_04535: AO353_04535 - aminopeptidase, at 979,283 to 980,773
_04535
AO353_04540: AO353_04540 - DNA polymerase III subunit chi, at 980,834 to 981,262
_04540
AO353_04545: AO353_04545 - DNA polymerase III subunit chi, at 981,270 to 981,692
_04545
AO353_04550: AO353_04550 - valine--tRNA ligase, at 981,912 to 984,758
_04550
Position (kb) 980
981
982 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 979.864 kb on + strand, within AO353_04535 at 979.865 kb on - strand, within AO353_04535 at 979.865 kb on - strand, within AO353_04535 at 979.982 kb on + strand, within AO353_04535 at 979.983 kb on - strand, within AO353_04535 at 979.983 kb on - strand, within AO353_04535 at 980.033 kb on + strand, within AO353_04535 at 980.033 kb on + strand, within AO353_04535 at 980.063 kb on + strand, within AO353_04535 at 980.063 kb on + strand, within AO353_04535 at 980.063 kb on + strand, within AO353_04535 at 980.063 kb on + strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.064 kb on - strand, within AO353_04535 at 980.106 kb on + strand, within AO353_04535 at 980.106 kb on + strand, within AO353_04535 at 980.106 kb on + strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.107 kb on - strand, within AO353_04535 at 980.144 kb on + strand, within AO353_04535 at 980.144 kb on + strand, within AO353_04535 at 980.144 kb on + strand, within AO353_04535 at 980.144 kb on + strand, within AO353_04535 at 980.145 kb on - strand, within AO353_04535 at 980.145 kb on - strand, within AO353_04535 at 980.287 kb on + strand, within AO353_04535 at 980.287 kb on + strand, within AO353_04535 at 980.287 kb on + strand, within AO353_04535 at 980.287 kb on + strand, within AO353_04535 at 980.363 kb on + strand, within AO353_04535 at 980.363 kb on + strand, within AO353_04535 at 980.364 kb on - strand, within AO353_04535 at 980.546 kb on + strand, within AO353_04535 at 980.546 kb on + strand, within AO353_04535 at 980.546 kb on + strand, within AO353_04535 at 980.852 kb on + strand at 980.853 kb on - strand at 980.939 kb on + strand, within AO353_04540 at 980.939 kb on + strand, within AO353_04540 at 980.940 kb on - strand, within AO353_04540 at 981.051 kb on + strand, within AO353_04540 at 981.249 kb on + strand at 981.249 kb on + strand at 981.681 kb on + strand at 981.723 kb on + strand at 981.723 kb on + strand at 981.724 kb on - strand at 981.730 kb on - strand at 981.730 kb on - strand at 981.730 kb on - strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.863 kb on + strand at 981.865 kb on + strand at 981.865 kb on + strand at 981.886 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 979,864 + AO353_04535 0.39 +0.9 979,865 - AO353_04535 0.39 -0.2 979,865 - AO353_04535 0.39 +1.6 979,982 + AO353_04535 0.47 -2.8 979,983 - AO353_04535 0.47 +1.0 979,983 - AO353_04535 0.47 -1.3 980,033 + AO353_04535 0.50 -0.8 980,033 + AO353_04535 0.50 -1.1 980,063 + AO353_04535 0.52 -1.4 980,063 + AO353_04535 0.52 +1.4 980,063 + AO353_04535 0.52 +0.7 980,063 + AO353_04535 0.52 -1.0 980,064 - AO353_04535 0.52 -1.3 980,064 - AO353_04535 0.52 -0.3 980,064 - AO353_04535 0.52 -0.3 980,064 - AO353_04535 0.52 +1.3 980,064 - AO353_04535 0.52 +1.1 980,064 - AO353_04535 0.52 +0.4 980,106 + AO353_04535 0.55 +0.3 980,106 + AO353_04535 0.55 -1.4 980,106 + AO353_04535 0.55 -1.4 980,107 - AO353_04535 0.55 -0.3 980,107 - AO353_04535 0.55 -1.1 980,107 - AO353_04535 0.55 +1.5 980,107 - AO353_04535 0.55 -1.6 980,107 - AO353_04535 0.55 +0.0 980,144 + AO353_04535 0.58 -1.8 980,144 + AO353_04535 0.58 +0.6 980,144 + AO353_04535 0.58 -0.1 980,144 + AO353_04535 0.58 -0.5 980,145 - AO353_04535 0.58 -0.8 980,145 - AO353_04535 0.58 +0.3 980,287 + AO353_04535 0.67 -1.1 980,287 + AO353_04535 0.67 +0.3 980,287 + AO353_04535 0.67 -0.3 980,287 + AO353_04535 0.67 +1.2 980,363 + AO353_04535 0.72 +0.5 980,363 + AO353_04535 0.72 -0.9 980,364 - AO353_04535 0.73 +0.6 980,546 + AO353_04535 0.85 -1.3 980,546 + AO353_04535 0.85 -0.7 980,546 + AO353_04535 0.85 +0.7 980,852 + -1.0 980,853 - -0.5 980,939 + AO353_04540 0.24 +0.5 980,939 + AO353_04540 0.24 -0.8 980,940 - AO353_04540 0.25 -1.4 981,051 + AO353_04540 0.51 -0.7 981,249 + -1.4 981,249 + -0.2 981,681 + +0.9 981,723 + -0.8 981,723 + -0.3 981,724 - +1.1 981,730 - -0.4 981,730 - +0.3 981,730 - +0.9 981,739 + -0.7 981,739 + -0.3 981,739 + +0.0 981,740 - +0.7 981,740 - -1.8 981,863 + -1.0 981,865 + +1.2 981,865 + -1.1 981,886 + +1.6
Or see this region's nucleotide sequence