Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04520

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04515 and AO353_04520 are separated by 5 nucleotidesAO353_04520 and AO353_04525 are separated by 171 nucleotides AO353_04515: AO353_04515 - signal peptidase, at 973,972 to 974,826 _04515 AO353_04520: AO353_04520 - elongation factor 4, at 974,832 to 976,631 _04520 AO353_04525: AO353_04525 - LPS export ABC transporter permease LptG, at 976,803 to 977,864 _04525 Position (kb) 974 975 976 977Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 973.843 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 973.974 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.827 kb on - strandat 974.834 kb on - strandat 974.834 kb on - strandat 974.834 kb on - strandat 974.834 kb on - strandat 974.834 kb on - strandat 974.834 kb on - strandat 974.838 kb on - strandat 974.838 kb on - strandat 974.838 kb on - strandat 974.838 kb on - strandat 974.838 kb on - strandat 975.169 kb on - strand, within AO353_04520at 975.296 kb on - strand, within AO353_04520at 975.438 kb on - strand, within AO353_04520at 975.438 kb on - strand, within AO353_04520at 975.647 kb on - strand, within AO353_04520at 975.737 kb on - strand, within AO353_04520at 975.737 kb on - strand, within AO353_04520at 975.858 kb on + strand, within AO353_04520at 975.858 kb on + strand, within AO353_04520at 975.859 kb on - strand, within AO353_04520at 976.015 kb on + strand, within AO353_04520at 976.194 kb on + strand, within AO353_04520at 976.195 kb on - strand, within AO353_04520at 976.274 kb on - strand, within AO353_04520at 976.367 kb on - strand, within AO353_04520at 976.419 kb on - strand, within AO353_04520at 976.435 kb on + strand, within AO353_04520at 976.436 kb on - strand, within AO353_04520at 976.436 kb on - strand, within AO353_04520at 976.436 kb on - strand, within AO353_04520at 976.436 kb on - strand, within AO353_04520at 976.439 kb on - strand, within AO353_04520at 976.439 kb on - strand, within AO353_04520at 976.661 kb on - strandat 976.695 kb on + strandat 976.695 kb on + strandat 976.695 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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973,843 - -0.8
973,974 - -0.4
973,974 - -0.8
973,974 - -0.3
973,974 - -0.2
973,974 - -0.7
973,974 - -1.7
973,974 - -0.4
973,974 - +2.3
974,827 - -0.3
974,827 - -2.1
974,827 - -0.5
974,827 - -0.3
974,827 - -1.0
974,827 - -1.8
974,827 - -2.0
974,827 - -1.8
974,827 - -2.3
974,827 - -1.4
974,827 - -1.1
974,834 - +0.0
974,834 - -1.1
974,834 - -1.0
974,834 - -2.4
974,834 - -0.3
974,834 - -1.0
974,838 - +0.7
974,838 - +0.6
974,838 - -0.8
974,838 - -0.5
974,838 - -0.7
975,169 - AO353_04520 0.19 +3.0
975,296 - AO353_04520 0.26 +4.7
975,438 - AO353_04520 0.34 +2.1
975,438 - AO353_04520 0.34 +3.8
975,647 - AO353_04520 0.45 +5.1
975,737 - AO353_04520 0.50 +1.3
975,737 - AO353_04520 0.50 -0.3
975,858 + AO353_04520 0.57 +2.3
975,858 + AO353_04520 0.57 -0.7
975,859 - AO353_04520 0.57 +3.9
976,015 + AO353_04520 0.66 +0.3
976,194 + AO353_04520 0.76 -1.6
976,195 - AO353_04520 0.76 +5.2
976,274 - AO353_04520 0.80 +3.1
976,367 - AO353_04520 0.85 -0.6
976,419 - AO353_04520 0.88 +2.6
976,435 + AO353_04520 0.89 -0.7
976,436 - AO353_04520 0.89 +3.4
976,436 - AO353_04520 0.89 +3.2
976,436 - AO353_04520 0.89 +3.3
976,436 - AO353_04520 0.89 +2.3
976,439 - AO353_04520 0.89 +2.5
976,439 - AO353_04520 0.89 +2.5
976,661 - +2.0
976,695 + -2.3
976,695 + -1.3
976,695 + -1.3

Or see this region's nucleotide sequence