Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03595

Experiment: Lomefloxacin 0.001 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03585 and AO353_03590 are separated by 118 nucleotidesAO353_03590 and AO353_03595 are separated by 203 nucleotidesAO353_03595 and AO353_03600 are separated by 129 nucleotides AO353_03585: AO353_03585 - ATP-dependent DNA helicase RuvA, at 765,934 to 766,542 _03585 AO353_03590: AO353_03590 - crossover junction endodeoxyribonuclease RuvC, at 766,661 to 767,185 _03590 AO353_03595: AO353_03595 - hypothetical protein, at 767,389 to 768,135 _03595 AO353_03600: AO353_03600 - aspartate--tRNA(Asp/Asn) ligase, at 768,265 to 770,040 _03600 Position (kb) 767 768 769Strain fitness (log2 ratio) -2 -1 0 1at 766.480 kb on + strand, within AO353_03585at 766.480 kb on + strand, within AO353_03585at 766.480 kb on + strand, within AO353_03585at 766.480 kb on + strand, within AO353_03585at 766.481 kb on - strand, within AO353_03585at 766.481 kb on - strand, within AO353_03585at 766.481 kb on - strand, within AO353_03585at 766.583 kb on + strandat 766.654 kb on + strandat 766.654 kb on + strandat 766.654 kb on + strandat 766.655 kb on - strandat 766.831 kb on + strand, within AO353_03590at 766.882 kb on - strand, within AO353_03590at 766.882 kb on - strand, within AO353_03590at 767.080 kb on + strand, within AO353_03590at 767.103 kb on + strand, within AO353_03590at 767.103 kb on + strand, within AO353_03590at 767.104 kb on - strand, within AO353_03590at 767.129 kb on + strand, within AO353_03590at 767.129 kb on + strand, within AO353_03590at 767.129 kb on + strand, within AO353_03590at 767.129 kb on + strand, within AO353_03590at 767.177 kb on + strandat 767.178 kb on - strandat 767.186 kb on - strandat 767.201 kb on - strandat 767.296 kb on + strandat 767.297 kb on - strandat 767.435 kb on + strandat 767.435 kb on + strandat 767.584 kb on - strand, within AO353_03595at 767.595 kb on - strand, within AO353_03595at 767.742 kb on - strand, within AO353_03595at 767.742 kb on - strand, within AO353_03595at 767.742 kb on - strand, within AO353_03595at 767.876 kb on + strand, within AO353_03595at 767.876 kb on + strand, within AO353_03595at 767.876 kb on + strand, within AO353_03595at 767.877 kb on - strand, within AO353_03595at 767.877 kb on - strand, within AO353_03595at 767.877 kb on - strand, within AO353_03595at 768.135 kb on + strandat 768.135 kb on + strandat 768.135 kb on + strandat 768.135 kb on + strandat 768.156 kb on + strandat 768.157 kb on - strandat 768.170 kb on - strandat 768.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM
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766,480 + AO353_03585 0.90 -0.6
766,480 + AO353_03585 0.90 -1.6
766,480 + AO353_03585 0.90 -0.8
766,480 + AO353_03585 0.90 -1.7
766,481 - AO353_03585 0.90 -1.6
766,481 - AO353_03585 0.90 -0.9
766,481 - AO353_03585 0.90 -1.6
766,583 + -1.2
766,654 + -1.3
766,654 + -1.1
766,654 + -0.9
766,655 - -2.7
766,831 + AO353_03590 0.32 -1.3
766,882 - AO353_03590 0.42 -0.6
766,882 - AO353_03590 0.42 -1.1
767,080 + AO353_03590 0.80 -2.1
767,103 + AO353_03590 0.84 -1.6
767,103 + AO353_03590 0.84 +0.7
767,104 - AO353_03590 0.84 -1.1
767,129 + AO353_03590 0.89 -0.7
767,129 + AO353_03590 0.89 +0.7
767,129 + AO353_03590 0.89 -2.2
767,129 + AO353_03590 0.89 -1.4
767,177 + -0.7
767,178 - -0.6
767,186 - -1.1
767,201 - -1.6
767,296 + -0.7
767,297 - -0.6
767,435 + -0.7
767,435 + -0.6
767,584 - AO353_03595 0.26 -2.5
767,595 - AO353_03595 0.28 -1.4
767,742 - AO353_03595 0.47 -1.2
767,742 - AO353_03595 0.47 -1.0
767,742 - AO353_03595 0.47 +0.3
767,876 + AO353_03595 0.65 +1.0
767,876 + AO353_03595 0.65 -0.3
767,876 + AO353_03595 0.65 -1.1
767,877 - AO353_03595 0.65 -1.9
767,877 - AO353_03595 0.65 -0.8
767,877 - AO353_03595 0.65 -1.3
768,135 + -1.8
768,135 + -1.4
768,135 + -1.3
768,135 + -0.9
768,156 + -0.9
768,157 - -0.6
768,170 - +0.3
768,171 + +0.3

Or see this region's nucleotide sequence