Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03455 and AO353_03460 are separated by 36 nucleotides AO353_03460 and AO353_03465 are separated by 496 nucleotides
AO353_03455: AO353_03455 - acyl-CoA transferase, at 737,540 to 738,886
_03455
AO353_03460: AO353_03460 - 3-methyladenine DNA glycosylase 2, at 738,923 to 739,786
_03460
AO353_03465: AO353_03465 - arginine-ornithine antiporter, at 740,283 to 741,710
_03465
Position (kb) 738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 738.642 kb on + strand, within AO353_03455 at 738.642 kb on + strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.643 kb on - strand, within AO353_03455 at 738.807 kb on + strand at 738.808 kb on - strand at 738.808 kb on - strand at 738.820 kb on - strand at 738.967 kb on - strand at 738.967 kb on - strand at 739.113 kb on + strand, within AO353_03460 at 739.113 kb on + strand, within AO353_03460 at 739.114 kb on - strand, within AO353_03460 at 739.114 kb on - strand, within AO353_03460 at 739.162 kb on + strand, within AO353_03460 at 739.345 kb on - strand, within AO353_03460 at 739.416 kb on - strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.454 kb on + strand, within AO353_03460 at 739.604 kb on + strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.605 kb on - strand, within AO353_03460 at 739.618 kb on + strand, within AO353_03460 at 739.618 kb on + strand, within AO353_03460 at 739.619 kb on - strand, within AO353_03460 at 739.633 kb on + strand, within AO353_03460 at 739.755 kb on + strand at 739.755 kb on + strand at 739.756 kb on - strand at 739.767 kb on + strand at 739.768 kb on - strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.834 kb on + strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.835 kb on - strand at 739.878 kb on - strand at 739.878 kb on - strand at 739.896 kb on + strand at 739.897 kb on - strand at 739.897 kb on - strand at 739.897 kb on - strand at 739.897 kb on - strand at 739.900 kb on + strand at 739.900 kb on + strand at 739.901 kb on - strand at 739.912 kb on + strand at 739.921 kb on - strand at 739.921 kb on - strand at 739.923 kb on + strand at 739.924 kb on - strand at 739.967 kb on + strand at 739.967 kb on + strand at 739.967 kb on + strand at 739.968 kb on - strand at 740.010 kb on + strand at 740.014 kb on + strand at 740.014 kb on + strand at 740.014 kb on + strand at 740.014 kb on + strand at 740.014 kb on + strand at 740.015 kb on - strand at 740.068 kb on + strand at 740.068 kb on + strand at 740.069 kb on - strand at 740.069 kb on - strand at 740.069 kb on - strand at 740.112 kb on + strand at 740.113 kb on - strand at 740.167 kb on + strand at 740.168 kb on - strand at 740.168 kb on - strand at 740.244 kb on + strand at 740.306 kb on - strand at 740.306 kb on - strand at 740.306 kb on - strand at 740.321 kb on - strand at 740.332 kb on + strand at 740.332 kb on + strand at 740.333 kb on - strand at 740.333 kb on - strand at 740.333 kb on - strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.335 kb on + strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.336 kb on - strand at 740.505 kb on + strand, within AO353_03465 at 740.505 kb on + strand, within AO353_03465 at 740.505 kb on + strand, within AO353_03465 at 740.506 kb on - strand, within AO353_03465 at 740.506 kb on - strand, within AO353_03465 at 740.512 kb on - strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.535 kb on + strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.536 kb on - strand, within AO353_03465 at 740.595 kb on + strand, within AO353_03465 at 740.596 kb on - strand, within AO353_03465 at 740.603 kb on - strand, within AO353_03465 at 740.603 kb on - strand, within AO353_03465 at 740.603 kb on - strand, within AO353_03465 at 740.625 kb on + strand, within AO353_03465 at 740.625 kb on + strand, within AO353_03465 at 740.655 kb on - strand, within AO353_03465 at 740.655 kb on - strand, within AO353_03465
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 738,642 + AO353_03455 0.82 -1.5 738,642 + AO353_03455 0.82 +1.8 738,643 - AO353_03455 0.82 -0.1 738,643 - AO353_03455 0.82 +0.0 738,643 - AO353_03455 0.82 -1.4 738,643 - AO353_03455 0.82 -0.3 738,643 - AO353_03455 0.82 -2.2 738,643 - AO353_03455 0.82 -1.2 738,643 - AO353_03455 0.82 -0.6 738,643 - AO353_03455 0.82 +0.5 738,643 - AO353_03455 0.82 -1.3 738,643 - AO353_03455 0.82 +1.1 738,807 + -2.1 738,808 - -0.6 738,808 - +1.4 738,820 - -0.3 738,967 - -0.1 738,967 - -0.9 739,113 + AO353_03460 0.22 -0.3 739,113 + AO353_03460 0.22 +0.0 739,114 - AO353_03460 0.22 -1.5 739,114 - AO353_03460 0.22 +1.2 739,162 + AO353_03460 0.28 -0.1 739,345 - AO353_03460 0.49 +0.9 739,416 - AO353_03460 0.57 -0.8 739,454 + AO353_03460 0.61 -2.4 739,454 + AO353_03460 0.61 -0.7 739,454 + AO353_03460 0.61 +1.1 739,454 + AO353_03460 0.61 +0.7 739,454 + AO353_03460 0.61 +0.8 739,454 + AO353_03460 0.61 -0.7 739,454 + AO353_03460 0.61 -0.1 739,604 + AO353_03460 0.79 +0.2 739,605 - AO353_03460 0.79 +0.5 739,605 - AO353_03460 0.79 +1.0 739,605 - AO353_03460 0.79 -0.9 739,605 - AO353_03460 0.79 +0.2 739,605 - AO353_03460 0.79 -0.6 739,618 + AO353_03460 0.80 +0.4 739,618 + AO353_03460 0.80 +1.0 739,619 - AO353_03460 0.81 -0.6 739,633 + AO353_03460 0.82 -0.2 739,755 + +0.8 739,755 + +0.0 739,756 - +0.1 739,767 + +1.2 739,768 - -1.3 739,834 + +1.1 739,834 + +1.5 739,834 + -0.3 739,834 + -1.3 739,834 + +1.0 739,834 + -0.1 739,835 - +1.7 739,835 - -0.2 739,835 - +0.4 739,835 - +1.2 739,835 - -0.6 739,835 - -0.4 739,878 - -1.5 739,878 - +0.2 739,896 + -0.1 739,897 - +0.5 739,897 - +1.5 739,897 - -3.2 739,897 - -1.6 739,900 + -0.8 739,900 + -0.8 739,901 - +0.9 739,912 + +1.8 739,921 - +1.6 739,921 - +1.2 739,923 + -0.3 739,924 - -0.1 739,967 + +0.7 739,967 + -1.9 739,967 + +1.2 739,968 - -1.5 740,010 + +0.7 740,014 + -0.3 740,014 + +1.2 740,014 + +1.1 740,014 + -0.6 740,014 + +2.4 740,015 - +3.4 740,068 + +1.7 740,068 + -0.4 740,069 - +0.4 740,069 - +0.1 740,069 - -0.9 740,112 + -1.3 740,113 - +1.2 740,167 + -0.8 740,168 - -0.5 740,168 - +0.6 740,244 + +0.9 740,306 - -0.1 740,306 - +1.9 740,306 - +0.4 740,321 - +2.2 740,332 + -0.1 740,332 + +0.1 740,333 - +0.3 740,333 - -0.5 740,333 - -2.6 740,335 + -1.5 740,335 + +0.2 740,335 + -0.0 740,335 + +0.8 740,335 + -0.2 740,335 + +0.7 740,335 + -0.5 740,335 + +0.6 740,335 + -0.5 740,335 + +0.8 740,335 + -2.0 740,335 + +0.4 740,335 + +0.1 740,335 + -0.6 740,336 - -0.3 740,336 - +0.0 740,336 - -1.3 740,336 - -1.9 740,336 - -0.3 740,336 - +1.0 740,336 - -0.7 740,336 - +0.1 740,336 - +1.2 740,336 - +1.2 740,505 + AO353_03465 0.16 +0.3 740,505 + AO353_03465 0.16 +1.6 740,505 + AO353_03465 0.16 +2.5 740,506 - AO353_03465 0.16 -0.9 740,506 - AO353_03465 0.16 -0.1 740,512 - AO353_03465 0.16 -2.5 740,535 + AO353_03465 0.18 +0.7 740,535 + AO353_03465 0.18 -1.3 740,535 + AO353_03465 0.18 +0.5 740,535 + AO353_03465 0.18 +0.7 740,535 + AO353_03465 0.18 +1.2 740,535 + AO353_03465 0.18 -0.1 740,535 + AO353_03465 0.18 +1.4 740,535 + AO353_03465 0.18 +0.5 740,535 + AO353_03465 0.18 +0.1 740,535 + AO353_03465 0.18 +0.5 740,536 - AO353_03465 0.18 -1.2 740,536 - AO353_03465 0.18 -0.1 740,536 - AO353_03465 0.18 +1.2 740,536 - AO353_03465 0.18 +0.2 740,536 - AO353_03465 0.18 +0.2 740,595 + AO353_03465 0.22 -1.4 740,596 - AO353_03465 0.22 +2.7 740,603 - AO353_03465 0.22 +1.4 740,603 - AO353_03465 0.22 -2.0 740,603 - AO353_03465 0.22 +2.1 740,625 + AO353_03465 0.24 -0.6 740,625 + AO353_03465 0.24 -1.5 740,655 - AO353_03465 0.26 -0.7 740,655 - AO353_03465 0.26 +0.8
Or see this region's nucleotide sequence