Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03200 and AO353_03205 are separated by 19 nucleotides AO353_03205 and AO353_03210 are separated by 233 nucleotides AO353_03210 and AO353_03215 are separated by 33 nucleotides AO353_03215 and AO353_03220 are separated by 155 nucleotides
AO353_03200: AO353_03200 - RNA polymerase subunit sigma-24, at 682,238 to 683,473
_03200
AO353_03205: AO353_03205 - dehydrogenase, at 683,493 to 683,840
_03205
AO353_03210: AO353_03210 - GNAT family acetyltransferase, at 684,074 to 684,559
_03210
AO353_03215: AO353_03215 - pyridoxamine 5'-phosphate oxidase, at 684,593 to 685,198
_03215
AO353_03220: AO353_03220 - GNAT family acetyltransferase, at 685,354 to 685,851
_03220
Position (kb) 684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 683.490 kb on + strand at 683.491 kb on - strand at 683.499 kb on + strand at 683.499 kb on + strand at 683.499 kb on + strand at 683.500 kb on - strand at 683.500 kb on - strand at 683.500 kb on - strand at 683.500 kb on - strand at 683.556 kb on - strand, within AO353_03205 at 683.556 kb on - strand, within AO353_03205 at 683.556 kb on - strand, within AO353_03205 at 683.605 kb on + strand, within AO353_03205 at 683.675 kb on + strand, within AO353_03205 at 683.675 kb on + strand, within AO353_03205 at 683.675 kb on + strand, within AO353_03205 at 683.676 kb on - strand, within AO353_03205 at 683.755 kb on + strand, within AO353_03205 at 683.755 kb on + strand, within AO353_03205 at 683.755 kb on + strand, within AO353_03205 at 683.756 kb on - strand, within AO353_03205 at 683.761 kb on - strand, within AO353_03205 at 683.819 kb on - strand at 683.819 kb on - strand at 683.819 kb on - strand at 683.819 kb on - strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.829 kb on + strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.830 kb on - strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.833 kb on + strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.834 kb on - strand at 683.840 kb on + strand at 683.840 kb on + strand at 683.840 kb on + strand at 683.840 kb on + strand at 683.841 kb on - strand at 683.841 kb on - strand at 683.841 kb on - strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.869 kb on + strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.870 kb on - strand at 683.968 kb on - strand at 684.003 kb on + strand at 684.003 kb on + strand at 684.004 kb on - strand at 684.008 kb on + strand at 684.008 kb on + strand at 684.008 kb on + strand at 684.009 kb on - strand at 684.009 kb on - strand at 684.009 kb on - strand at 684.009 kb on - strand at 684.009 kb on - strand at 684.334 kb on - strand, within AO353_03210 at 684.365 kb on + strand, within AO353_03210 at 684.365 kb on + strand, within AO353_03210 at 684.476 kb on + strand, within AO353_03210 at 684.476 kb on + strand, within AO353_03210 at 684.476 kb on + strand, within AO353_03210 at 684.477 kb on - strand, within AO353_03210 at 684.477 kb on - strand, within AO353_03210 at 684.512 kb on + strand at 684.513 kb on - strand at 684.513 kb on - strand at 684.626 kb on + strand at 684.767 kb on - strand, within AO353_03215 at 684.826 kb on + strand, within AO353_03215 at 684.830 kb on - strand, within AO353_03215 at 684.830 kb on - strand, within AO353_03215 at 685.022 kb on + strand, within AO353_03215 at 685.022 kb on + strand, within AO353_03215 at 685.022 kb on + strand, within AO353_03215 at 685.023 kb on - strand, within AO353_03215 at 685.023 kb on - strand at 685.042 kb on + strand, within AO353_03215 at 685.043 kb on - strand, within AO353_03215 at 685.076 kb on + strand, within AO353_03215 at 685.077 kb on - strand, within AO353_03215 at 685.154 kb on + strand at 685.154 kb on + strand at 685.154 kb on + strand at 685.154 kb on + strand at 685.155 kb on - strand at 685.155 kb on - strand at 685.155 kb on - strand at 685.194 kb on - strand at 685.194 kb on - strand at 685.194 kb on - strand at 685.196 kb on + strand at 685.196 kb on + strand at 685.196 kb on + strand at 685.197 kb on - strand at 685.235 kb on - strand at 685.296 kb on + strand at 685.296 kb on + strand at 685.297 kb on - strand at 685.297 kb on - strand at 685.305 kb on + strand at 685.305 kb on + strand at 685.306 kb on - strand at 685.408 kb on + strand, within AO353_03220 at 685.408 kb on + strand, within AO353_03220 at 685.418 kb on + strand, within AO353_03220 at 685.419 kb on - strand, within AO353_03220 at 685.419 kb on - strand, within AO353_03220 at 685.439 kb on + strand, within AO353_03220 at 685.440 kb on - strand, within AO353_03220 at 685.440 kb on - strand, within AO353_03220 at 685.440 kb on - strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.447 kb on + strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.448 kb on - strand, within AO353_03220 at 685.474 kb on - strand, within AO353_03220
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 683,490 + +0.4 683,491 - -0.3 683,499 + -2.8 683,499 + -0.5 683,499 + -1.1 683,500 - +2.8 683,500 - -1.5 683,500 - -1.1 683,500 - -1.3 683,556 - AO353_03205 0.18 +1.7 683,556 - AO353_03205 0.18 -1.7 683,556 - AO353_03205 0.18 +0.5 683,605 + AO353_03205 0.32 -0.5 683,675 + AO353_03205 0.52 -2.3 683,675 + AO353_03205 0.52 +1.7 683,675 + AO353_03205 0.52 +1.0 683,676 - AO353_03205 0.53 -1.5 683,755 + AO353_03205 0.75 -0.6 683,755 + AO353_03205 0.75 +0.2 683,755 + AO353_03205 0.75 -0.3 683,756 - AO353_03205 0.76 -0.2 683,761 - AO353_03205 0.77 +0.7 683,819 - -0.7 683,819 - -2.0 683,819 - -0.6 683,819 - +0.5 683,829 + +2.8 683,829 + -0.2 683,829 + -0.3 683,829 + -0.8 683,829 + +0.1 683,829 + -0.3 683,829 + +0.8 683,829 + +0.3 683,829 + -1.3 683,829 + +1.5 683,829 + +0.4 683,829 + +0.7 683,829 + -0.9 683,829 + +2.6 683,829 + +0.1 683,829 + -0.9 683,830 - +2.2 683,830 - -0.6 683,830 - -1.5 683,830 - -0.2 683,830 - -0.3 683,830 - +1.9 683,830 - -1.1 683,830 - +1.2 683,830 - -1.8 683,830 - -0.1 683,830 - -1.9 683,830 - +0.9 683,830 - -1.3 683,830 - -1.4 683,830 - -1.0 683,833 + -0.6 683,833 + -0.8 683,833 + -1.5 683,833 + +0.8 683,833 + -1.1 683,833 + -1.5 683,833 + -0.8 683,833 + -0.7 683,833 + -0.2 683,833 + +0.1 683,833 + -0.8 683,834 - -0.3 683,834 - +2.2 683,834 - -0.9 683,834 - -1.4 683,834 - -1.7 683,834 - +1.7 683,834 - -1.6 683,834 - -0.9 683,834 - +0.1 683,840 + -0.8 683,840 + -0.0 683,840 + -2.8 683,840 + -0.6 683,841 - -1.1 683,841 - -0.8 683,841 - -0.5 683,869 + +0.9 683,869 + +0.7 683,869 + -0.8 683,869 + +0.8 683,869 + +1.6 683,869 + -1.0 683,870 - -1.1 683,870 - -1.8 683,870 - -0.1 683,870 - +1.5 683,870 - +1.4 683,870 - +0.3 683,870 - -1.2 683,870 - -0.9 683,870 - -0.6 683,870 - -1.5 683,870 - +0.9 683,870 - +0.2 683,870 - +0.7 683,870 - -0.4 683,870 - +1.0 683,968 - -1.1 684,003 + -1.1 684,003 + -1.6 684,004 - -1.1 684,008 + -0.3 684,008 + -0.7 684,008 + +0.2 684,009 - -0.1 684,009 - +0.4 684,009 - +1.5 684,009 - -1.5 684,009 - -0.8 684,334 - AO353_03210 0.53 +0.9 684,365 + AO353_03210 0.60 -0.4 684,365 + AO353_03210 0.60 -3.6 684,476 + AO353_03210 0.83 -0.5 684,476 + AO353_03210 0.83 -0.6 684,476 + AO353_03210 0.83 -1.2 684,477 - AO353_03210 0.83 -0.8 684,477 - AO353_03210 0.83 -1.7 684,512 + +1.0 684,513 - +0.1 684,513 - -0.1 684,626 + -0.9 684,767 - AO353_03215 0.29 +0.5 684,826 + AO353_03215 0.38 -0.6 684,830 - AO353_03215 0.39 -1.2 684,830 - AO353_03215 0.39 -0.7 685,022 + AO353_03215 0.71 -0.3 685,022 + AO353_03215 0.71 +0.1 685,022 + AO353_03215 0.71 -0.3 685,023 - AO353_03215 0.71 +1.0 685,023 - +0.7 685,042 + AO353_03215 0.74 +1.2 685,043 - AO353_03215 0.74 -0.6 685,076 + AO353_03215 0.80 +1.0 685,077 - AO353_03215 0.80 -0.1 685,154 + -0.1 685,154 + -0.8 685,154 + +0.0 685,154 + +0.3 685,155 - +0.4 685,155 - -0.1 685,155 - -0.6 685,194 - +0.1 685,194 - +0.4 685,194 - -2.0 685,196 + +1.8 685,196 + -1.5 685,196 + +0.2 685,197 - -2.1 685,235 - +1.2 685,296 + -0.9 685,296 + +0.7 685,297 - +2.0 685,297 - +1.3 685,305 + -1.7 685,305 + -1.2 685,306 - -0.2 685,408 + AO353_03220 0.11 -0.1 685,408 + AO353_03220 0.11 -1.3 685,418 + AO353_03220 0.13 -0.3 685,419 - AO353_03220 0.13 -0.3 685,419 - AO353_03220 0.13 -1.2 685,439 + AO353_03220 0.17 -1.1 685,440 - AO353_03220 0.17 -1.3 685,440 - AO353_03220 0.17 +1.4 685,440 - AO353_03220 0.17 -1.5 685,447 + AO353_03220 0.19 +0.1 685,447 + AO353_03220 0.19 -0.3 685,447 + AO353_03220 0.19 +2.2 685,447 + AO353_03220 0.19 +2.8 685,447 + AO353_03220 0.19 +1.2 685,447 + AO353_03220 0.19 +0.7 685,447 + AO353_03220 0.19 -0.6 685,447 + AO353_03220 0.19 -2.8 685,447 + AO353_03220 0.19 -0.8 685,447 + AO353_03220 0.19 +0.5 685,448 - AO353_03220 0.19 -0.2 685,448 - AO353_03220 0.19 +2.2 685,448 - AO353_03220 0.19 -0.1 685,448 - AO353_03220 0.19 +0.2 685,448 - AO353_03220 0.19 -2.4 685,448 - AO353_03220 0.19 -1.8 685,474 - AO353_03220 0.24 +0.3
Or see this region's nucleotide sequence