Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03160 and AO353_03165 are separated by 278 nucleotides AO353_03165 and AO353_03170 are separated by 227 nucleotides
AO353_03160: AO353_03160 - chemotaxis protein, at 673,551 to 675,176
_03160
AO353_03165: AO353_03165 - magnesium transporter CorA, at 675,455 to 676,477
_03165
AO353_03170: AO353_03170 - nuclease PIN, at 676,705 to 678,321
_03170
Position (kb) 675
676
677 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 674.506 kb on + strand, within AO353_03160 at 674.506 kb on + strand, within AO353_03160 at 674.507 kb on - strand, within AO353_03160 at 674.703 kb on - strand, within AO353_03160 at 674.767 kb on + strand, within AO353_03160 at 674.767 kb on + strand, within AO353_03160 at 674.767 kb on + strand, within AO353_03160 at 674.767 kb on + strand, within AO353_03160 at 674.767 kb on + strand, within AO353_03160 at 674.768 kb on - strand, within AO353_03160 at 674.768 kb on - strand, within AO353_03160 at 674.768 kb on - strand, within AO353_03160 at 674.768 kb on - strand, within AO353_03160 at 674.788 kb on + strand, within AO353_03160 at 674.789 kb on - strand, within AO353_03160 at 674.840 kb on + strand, within AO353_03160 at 674.840 kb on + strand, within AO353_03160 at 674.840 kb on + strand, within AO353_03160 at 674.841 kb on - strand, within AO353_03160 at 674.841 kb on - strand, within AO353_03160 at 674.841 kb on - strand, within AO353_03160 at 674.841 kb on - strand, within AO353_03160 at 674.892 kb on + strand, within AO353_03160 at 674.892 kb on + strand, within AO353_03160 at 674.892 kb on + strand, within AO353_03160 at 674.892 kb on + strand, within AO353_03160 at 674.893 kb on - strand at 674.893 kb on - strand, within AO353_03160 at 674.893 kb on - strand, within AO353_03160 at 674.893 kb on - strand, within AO353_03160 at 674.893 kb on - strand, within AO353_03160 at 674.893 kb on - strand, within AO353_03160 at 674.893 kb on - strand, within AO353_03160 at 674.926 kb on + strand, within AO353_03160 at 674.926 kb on + strand, within AO353_03160 at 674.926 kb on + strand, within AO353_03160 at 674.927 kb on - strand, within AO353_03160 at 674.927 kb on - strand, within AO353_03160 at 674.927 kb on - strand, within AO353_03160 at 674.927 kb on - strand, within AO353_03160 at 674.927 kb on - strand, within AO353_03160 at 675.029 kb on + strand at 675.029 kb on + strand at 675.030 kb on - strand at 675.030 kb on - strand at 675.030 kb on - strand at 675.030 kb on - strand at 675.030 kb on - strand at 675.030 kb on - strand at 675.030 kb on - strand at 675.034 kb on - strand at 675.034 kb on - strand at 675.058 kb on + strand at 675.058 kb on + strand at 675.081 kb on + strand at 675.081 kb on + strand at 675.081 kb on + strand at 675.082 kb on - strand at 675.082 kb on - strand at 675.184 kb on + strand at 675.184 kb on + strand at 675.184 kb on + strand at 675.184 kb on + strand at 675.184 kb on + strand at 675.185 kb on - strand at 675.199 kb on + strand at 675.200 kb on - strand at 675.286 kb on + strand at 675.287 kb on - strand at 675.287 kb on - strand at 675.346 kb on + strand at 675.346 kb on + strand at 675.346 kb on + strand at 675.347 kb on - strand at 675.347 kb on - strand at 675.347 kb on - strand at 675.349 kb on + strand at 675.349 kb on + strand at 675.424 kb on + strand at 675.424 kb on + strand at 675.425 kb on - strand at 675.425 kb on - strand at 675.425 kb on - strand at 675.425 kb on - strand at 675.509 kb on + strand at 675.509 kb on + strand at 675.509 kb on + strand at 675.510 kb on - strand at 676.472 kb on + strand at 676.473 kb on - strand at 676.475 kb on + strand at 676.475 kb on + strand at 676.476 kb on - strand at 676.476 kb on - strand at 676.476 kb on - strand at 676.487 kb on + strand at 676.487 kb on + strand at 676.487 kb on + strand at 676.488 kb on - strand at 676.488 kb on - strand at 676.488 kb on - strand at 676.488 kb on - strand at 676.488 kb on - strand at 676.494 kb on + strand at 676.494 kb on + strand at 676.494 kb on + strand at 676.578 kb on + strand at 676.578 kb on + strand at 676.578 kb on + strand at 676.578 kb on + strand at 676.584 kb on + strand at 676.585 kb on - strand at 676.585 kb on - strand at 676.585 kb on - strand at 676.649 kb on + strand at 676.650 kb on - strand at 676.650 kb on - strand at 676.710 kb on + strand at 676.784 kb on + strand at 676.784 kb on + strand at 676.784 kb on + strand at 676.784 kb on + strand at 676.784 kb on + strand at 676.785 kb on - strand at 676.785 kb on - strand at 676.788 kb on + strand at 676.789 kb on - strand at 676.840 kb on + strand at 676.904 kb on + strand, within AO353_03170 at 676.904 kb on + strand, within AO353_03170 at 676.990 kb on + strand, within AO353_03170 at 676.990 kb on + strand, within AO353_03170 at 676.990 kb on + strand, within AO353_03170 at 676.990 kb on + strand, within AO353_03170 at 676.990 kb on + strand, within AO353_03170 at 676.991 kb on - strand, within AO353_03170 at 676.991 kb on - strand, within AO353_03170 at 676.991 kb on - strand, within AO353_03170 at 676.991 kb on - strand, within AO353_03170 at 676.991 kb on - strand, within AO353_03170 at 676.991 kb on - strand, within AO353_03170 at 677.419 kb on + strand, within AO353_03170 at 677.420 kb on - strand, within AO353_03170 at 677.420 kb on - strand, within AO353_03170 at 677.420 kb on - strand, within AO353_03170
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 674,506 + AO353_03160 0.59 -0.9 674,506 + AO353_03160 0.59 -0.2 674,507 - AO353_03160 0.59 -0.4 674,703 - AO353_03160 0.71 -1.2 674,767 + AO353_03160 0.75 -0.8 674,767 + AO353_03160 0.75 -0.6 674,767 + AO353_03160 0.75 +1.2 674,767 + AO353_03160 0.75 -1.2 674,767 + AO353_03160 0.75 -0.4 674,768 - AO353_03160 0.75 +0.2 674,768 - AO353_03160 0.75 +0.6 674,768 - AO353_03160 0.75 -0.8 674,768 - AO353_03160 0.75 -0.5 674,788 + AO353_03160 0.76 -1.3 674,789 - AO353_03160 0.76 +0.2 674,840 + AO353_03160 0.79 -0.7 674,840 + AO353_03160 0.79 -1.1 674,840 + AO353_03160 0.79 -1.8 674,841 - AO353_03160 0.79 -1.1 674,841 - AO353_03160 0.79 -1.4 674,841 - AO353_03160 0.79 +0.6 674,841 - AO353_03160 0.79 -0.8 674,892 + AO353_03160 0.82 +1.8 674,892 + AO353_03160 0.82 +0.4 674,892 + AO353_03160 0.82 -0.7 674,892 + AO353_03160 0.82 -0.4 674,893 - +1.2 674,893 - AO353_03160 0.83 -1.8 674,893 - AO353_03160 0.83 -1.1 674,893 - AO353_03160 0.83 +0.4 674,893 - AO353_03160 0.83 -1.9 674,893 - AO353_03160 0.83 +2.2 674,893 - AO353_03160 0.83 -3.2 674,926 + AO353_03160 0.85 +0.5 674,926 + AO353_03160 0.85 +1.1 674,926 + AO353_03160 0.85 -2.2 674,927 - AO353_03160 0.85 -1.2 674,927 - AO353_03160 0.85 -1.4 674,927 - AO353_03160 0.85 +2.1 674,927 - AO353_03160 0.85 -0.1 674,927 - AO353_03160 0.85 -1.1 675,029 + -1.8 675,029 + -2.5 675,030 - +0.4 675,030 - -1.1 675,030 - -0.4 675,030 - -1.1 675,030 - +0.9 675,030 - +0.7 675,030 - -0.4 675,034 - +2.0 675,034 - +1.2 675,058 + -1.4 675,058 + -2.1 675,081 + +1.2 675,081 + -0.0 675,081 + +0.3 675,082 - -0.1 675,082 - -1.3 675,184 + -0.0 675,184 + +2.2 675,184 + -0.8 675,184 + -1.1 675,184 + +0.5 675,185 - -0.4 675,199 + +0.1 675,200 - -0.6 675,286 + +1.3 675,287 - -1.3 675,287 - -3.1 675,346 + -2.4 675,346 + +0.4 675,346 + -0.1 675,347 - +0.1 675,347 - +0.5 675,347 - -0.8 675,349 + +1.8 675,349 + +1.2 675,424 + -0.1 675,424 + -0.7 675,425 - +0.5 675,425 - -0.3 675,425 - -0.6 675,425 - +1.0 675,509 + -1.9 675,509 + -0.1 675,509 + +0.1 675,510 - +0.2 676,472 + -0.8 676,473 - +0.8 676,475 + +1.0 676,475 + -0.4 676,476 - -0.8 676,476 - -0.1 676,476 - +1.6 676,487 + -1.3 676,487 + +0.8 676,487 + +2.0 676,488 - -0.6 676,488 - +0.2 676,488 - -1.5 676,488 - -0.7 676,488 - +2.0 676,494 + -1.1 676,494 + -1.2 676,494 + +4.6 676,578 + +0.1 676,578 + +0.7 676,578 + +3.2 676,578 + -0.3 676,584 + +0.2 676,585 - -2.5 676,585 - -2.0 676,585 - +0.7 676,649 + +0.1 676,650 - +1.2 676,650 - -2.3 676,710 + +1.7 676,784 + -0.6 676,784 + +1.6 676,784 + -0.5 676,784 + -0.5 676,784 + -0.9 676,785 - +0.7 676,785 - -1.0 676,788 + +0.9 676,789 - -0.5 676,840 + +1.3 676,904 + AO353_03170 0.12 -0.5 676,904 + AO353_03170 0.12 +0.5 676,990 + AO353_03170 0.18 +0.5 676,990 + AO353_03170 0.18 -0.5 676,990 + AO353_03170 0.18 -0.3 676,990 + AO353_03170 0.18 -0.6 676,990 + AO353_03170 0.18 -0.6 676,991 - AO353_03170 0.18 -0.6 676,991 - AO353_03170 0.18 -0.1 676,991 - AO353_03170 0.18 -1.8 676,991 - AO353_03170 0.18 +1.4 676,991 - AO353_03170 0.18 +0.1 676,991 - AO353_03170 0.18 -0.1 677,419 + AO353_03170 0.44 +0.7 677,420 - AO353_03170 0.44 +0.2 677,420 - AO353_03170 0.44 -0.2 677,420 - AO353_03170 0.44 +0.4
Or see this region's nucleotide sequence