Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02555 and AO353_02560 are separated by 18 nucleotides AO353_02560 and AO353_02565 are separated by 61 nucleotides
AO353_02555: AO353_02555 - histidine kinase, at 543,720 to 547,190
_02555
AO353_02560: AO353_02560 - recombinase RmuC, at 547,209 to 548,687
_02560
AO353_02565: AO353_02565 - hypothetical protein, at 548,749 to 549,072
_02565
Position (kb) 547
548
549 Strain fitness (log2 ratio) -2
-1
0
1
2 at 546.250 kb on + strand, within AO353_02555 at 546.251 kb on - strand, within AO353_02555 at 546.599 kb on + strand, within AO353_02555 at 546.843 kb on - strand, within AO353_02555 at 546.843 kb on - strand, within AO353_02555 at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.909 kb on + strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.910 kb on - strand at 546.912 kb on - strand at 546.984 kb on + strand at 547.125 kb on + strand at 547.125 kb on + strand at 547.126 kb on - strand at 547.126 kb on - strand at 547.126 kb on - strand at 547.205 kb on + strand at 547.206 kb on - strand at 547.206 kb on - strand at 547.210 kb on + strand at 547.210 kb on + strand at 547.210 kb on + strand at 547.211 kb on - strand at 547.355 kb on + strand at 547.355 kb on + strand at 547.356 kb on - strand at 547.370 kb on - strand, within AO353_02560 at 547.421 kb on + strand, within AO353_02560 at 547.422 kb on - strand, within AO353_02560 at 547.559 kb on + strand, within AO353_02560 at 547.641 kb on + strand, within AO353_02560 at 547.642 kb on - strand, within AO353_02560 at 547.642 kb on - strand, within AO353_02560 at 547.644 kb on + strand, within AO353_02560 at 547.679 kb on + strand, within AO353_02560 at 547.679 kb on + strand, within AO353_02560 at 547.680 kb on - strand, within AO353_02560 at 547.680 kb on - strand, within AO353_02560 at 547.680 kb on - strand, within AO353_02560 at 547.680 kb on - strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.681 kb on + strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.682 kb on - strand, within AO353_02560 at 547.713 kb on - strand, within AO353_02560 at 547.777 kb on + strand, within AO353_02560 at 547.777 kb on + strand, within AO353_02560 at 547.777 kb on + strand, within AO353_02560 at 547.777 kb on + strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.778 kb on - strand, within AO353_02560 at 547.786 kb on + strand, within AO353_02560 at 547.787 kb on - strand, within AO353_02560 at 547.787 kb on - strand, within AO353_02560 at 547.840 kb on + strand, within AO353_02560 at 547.840 kb on + strand, within AO353_02560 at 547.841 kb on - strand, within AO353_02560 at 548.316 kb on + strand, within AO353_02560 at 548.360 kb on + strand, within AO353_02560 at 548.361 kb on - strand, within AO353_02560 at 548.361 kb on - strand, within AO353_02560 at 548.361 kb on - strand, within AO353_02560 at 548.361 kb on - strand, within AO353_02560 at 548.421 kb on + strand, within AO353_02560 at 548.421 kb on + strand, within AO353_02560 at 548.421 kb on + strand, within AO353_02560 at 548.422 kb on - strand, within AO353_02560 at 548.422 kb on - strand, within AO353_02560 at 548.424 kb on + strand, within AO353_02560 at 548.424 kb on + strand, within AO353_02560 at 548.424 kb on + strand, within AO353_02560 at 548.424 kb on + strand, within AO353_02560 at 548.425 kb on - strand, within AO353_02560 at 548.425 kb on - strand, within AO353_02560 at 548.425 kb on - strand, within AO353_02560 at 548.552 kb on + strand at 548.708 kb on + strand at 548.709 kb on - strand at 548.709 kb on - strand at 548.709 kb on - strand at 549.055 kb on + strand at 549.056 kb on - strand at 549.072 kb on + strand at 549.072 kb on + strand at 549.073 kb on - strand at 549.073 kb on - strand at 549.109 kb on + strand at 549.109 kb on + strand at 549.109 kb on + strand at 549.110 kb on - strand at 549.129 kb on + strand at 549.159 kb on + strand at 549.319 kb on + strand at 549.376 kb on + strand at 549.376 kb on + strand at 549.377 kb on - strand at 549.377 kb on - strand at 549.377 kb on - strand at 549.377 kb on - strand at 549.377 kb on - strand at 549.404 kb on + strand at 549.404 kb on + strand at 549.404 kb on + strand at 549.404 kb on + strand at 549.405 kb on - strand at 549.405 kb on - strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.406 kb on + strand at 549.407 kb on - strand at 549.407 kb on - strand at 549.407 kb on - strand at 549.407 kb on - strand at 549.407 kb on - strand at 549.463 kb on + strand at 549.463 kb on + strand at 549.464 kb on - strand at 549.464 kb on - strand at 549.464 kb on - strand at 549.528 kb on + strand at 549.529 kb on - strand at 549.529 kb on - strand at 549.529 kb on - strand at 549.529 kb on - strand at 549.605 kb on + strand at 549.605 kb on + strand at 549.605 kb on + strand at 549.605 kb on + strand at 549.605 kb on + strand at 549.605 kb on + strand at 549.606 kb on - strand at 549.606 kb on - strand at 549.606 kb on - strand at 549.616 kb on - strand at 549.676 kb on + strand at 549.676 kb on + strand at 549.679 kb on + strand at 549.679 kb on + strand at 549.680 kb on - strand at 549.680 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 546,250 + AO353_02555 0.73 +1.0 546,251 - AO353_02555 0.73 +1.5 546,599 + AO353_02555 0.83 -1.0 546,843 - AO353_02555 0.90 -0.9 546,843 - AO353_02555 0.90 -1.7 546,909 + -0.1 546,909 + -0.7 546,909 + +0.0 546,909 + +0.2 546,909 + +0.8 546,909 + -0.6 546,909 + +0.2 546,909 + -0.7 546,909 + -1.3 546,909 + +1.8 546,910 - +0.2 546,910 - -0.8 546,910 - +1.0 546,910 - +0.6 546,910 - -1.6 546,910 - +1.0 546,910 - +1.2 546,910 - +1.0 546,910 - -0.6 546,910 - +2.5 546,912 - -1.9 546,984 + -1.8 547,125 + +0.8 547,125 + +0.2 547,126 - +0.6 547,126 - -1.1 547,126 - -0.2 547,205 + -0.1 547,206 - -2.5 547,206 - -0.4 547,210 + +0.6 547,210 + +1.0 547,210 + -1.0 547,211 - -1.0 547,355 + -0.8 547,355 + -1.1 547,356 - -0.6 547,370 - AO353_02560 0.11 -0.8 547,421 + AO353_02560 0.14 -0.7 547,422 - AO353_02560 0.14 +0.9 547,559 + AO353_02560 0.24 -0.2 547,641 + AO353_02560 0.29 -0.1 547,642 - AO353_02560 0.29 -1.7 547,642 - AO353_02560 0.29 -1.3 547,644 + AO353_02560 0.29 -0.8 547,679 + AO353_02560 0.32 -2.4 547,679 + AO353_02560 0.32 -1.3 547,680 - AO353_02560 0.32 -0.5 547,680 - AO353_02560 0.32 -1.6 547,680 - AO353_02560 0.32 -2.3 547,680 - AO353_02560 0.32 -1.3 547,681 + AO353_02560 0.32 -0.0 547,681 + AO353_02560 0.32 -1.6 547,681 + AO353_02560 0.32 -1.3 547,681 + AO353_02560 0.32 -2.0 547,681 + AO353_02560 0.32 -0.9 547,681 + AO353_02560 0.32 +2.2 547,681 + AO353_02560 0.32 -2.5 547,681 + AO353_02560 0.32 -1.3 547,681 + AO353_02560 0.32 -0.4 547,682 - AO353_02560 0.32 -0.2 547,682 - AO353_02560 0.32 -2.1 547,682 - AO353_02560 0.32 -1.0 547,682 - AO353_02560 0.32 +0.3 547,682 - AO353_02560 0.32 -0.8 547,682 - AO353_02560 0.32 -1.6 547,682 - AO353_02560 0.32 -1.1 547,682 - AO353_02560 0.32 -0.3 547,682 - AO353_02560 0.32 -2.6 547,682 - AO353_02560 0.32 +0.0 547,713 - AO353_02560 0.34 -1.0 547,777 + AO353_02560 0.38 +0.4 547,777 + AO353_02560 0.38 +1.5 547,777 + AO353_02560 0.38 -1.3 547,777 + AO353_02560 0.38 -1.5 547,778 - AO353_02560 0.38 +0.4 547,778 - AO353_02560 0.38 +0.8 547,778 - AO353_02560 0.38 +0.3 547,778 - AO353_02560 0.38 -1.0 547,778 - AO353_02560 0.38 -1.8 547,778 - AO353_02560 0.38 -1.7 547,778 - AO353_02560 0.38 -2.1 547,778 - AO353_02560 0.38 +0.0 547,786 + AO353_02560 0.39 +0.6 547,787 - AO353_02560 0.39 -1.5 547,787 - AO353_02560 0.39 -2.0 547,840 + AO353_02560 0.43 -1.5 547,840 + AO353_02560 0.43 -0.1 547,841 - AO353_02560 0.43 -0.1 548,316 + AO353_02560 0.75 -0.6 548,360 + AO353_02560 0.78 -1.0 548,361 - AO353_02560 0.78 +0.6 548,361 - AO353_02560 0.78 +0.4 548,361 - AO353_02560 0.78 -0.1 548,361 - AO353_02560 0.78 -2.1 548,421 + AO353_02560 0.82 -0.1 548,421 + AO353_02560 0.82 -1.3 548,421 + AO353_02560 0.82 -1.0 548,422 - AO353_02560 0.82 +0.6 548,422 - AO353_02560 0.82 +0.4 548,424 + AO353_02560 0.82 -0.1 548,424 + AO353_02560 0.82 -1.2 548,424 + AO353_02560 0.82 -0.1 548,424 + AO353_02560 0.82 +0.8 548,425 - AO353_02560 0.82 -0.8 548,425 - AO353_02560 0.82 +0.4 548,425 - AO353_02560 0.82 -0.0 548,552 + -0.4 548,708 + -0.6 548,709 - -1.2 548,709 - -1.4 548,709 - -0.6 549,055 + +1.2 549,056 - +0.2 549,072 + +1.0 549,072 + -0.8 549,073 - -1.5 549,073 - +1.1 549,109 + -0.3 549,109 + +0.9 549,109 + -0.1 549,110 - +0.1 549,129 + -0.4 549,159 + +0.1 549,319 + -0.4 549,376 + -1.1 549,376 + -1.3 549,377 - -1.3 549,377 - +0.1 549,377 - -0.8 549,377 - +1.2 549,377 - +0.3 549,404 + -0.1 549,404 + -2.1 549,404 + +1.2 549,404 + +1.4 549,405 - -0.9 549,405 - -0.9 549,406 + -0.6 549,406 + -0.6 549,406 + -0.3 549,406 + -0.9 549,406 + +0.4 549,406 + +0.6 549,406 + -1.3 549,406 + -1.9 549,406 + -0.0 549,407 - -0.1 549,407 - -0.1 549,407 - +0.2 549,407 - -1.6 549,407 - -0.5 549,463 + +0.6 549,463 + +0.6 549,464 - -2.1 549,464 - +0.2 549,464 - -1.4 549,528 + +0.1 549,529 - -1.0 549,529 - -0.6 549,529 - -0.1 549,529 - -1.0 549,605 + -0.2 549,605 + +0.6 549,605 + +0.2 549,605 + -1.1 549,605 + +1.0 549,605 + -1.4 549,606 - +1.0 549,606 - -0.6 549,606 - +0.4 549,616 - +0.6 549,676 + -0.8 549,676 + +0.8 549,679 + -1.1 549,679 + -1.0 549,680 - -0.1 549,680 - +0.6
Or see this region's nucleotide sequence