Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02270 and AO353_02275 are separated by 132 nucleotides AO353_02275 and AO353_02280 are separated by 75 nucleotides AO353_02280 and AO353_02285 are separated by 77 nucleotides AO353_02285 and AO353_02290 are separated by 103 nucleotides
AO353_02270: AO353_02270 - isochorismatase, at 485,393 to 485,983
_02270
AO353_02275: AO353_02275 - hypothetical protein, at 486,116 to 486,436
_02275
AO353_02280: AO353_02280 - DNA mismatch repair protein MutS, at 486,512 to 487,069
_02280
AO353_02285: AO353_02285 - GTP cyclohydrolase, at 487,147 to 487,692
_02285
AO353_02290: AO353_02290 - glutaredoxin, at 487,796 to 488,167
_02290
Position (kb) 486
487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 485.542 kb on + strand, within AO353_02270 at 485.595 kb on + strand, within AO353_02270 at 485.595 kb on + strand, within AO353_02270 at 485.595 kb on + strand at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.596 kb on - strand, within AO353_02270 at 485.803 kb on + strand, within AO353_02270 at 485.804 kb on - strand, within AO353_02270 at 485.804 kb on - strand, within AO353_02270 at 486.052 kb on + strand at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.341 kb on + strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.342 kb on - strand, within AO353_02275 at 486.906 kb on + strand, within AO353_02280 at 486.906 kb on + strand, within AO353_02280 at 486.906 kb on + strand, within AO353_02280 at 486.906 kb on + strand, within AO353_02280 at 487.025 kb on + strand at 487.025 kb on + strand at 487.025 kb on + strand at 487.026 kb on - strand at 487.026 kb on - strand at 487.026 kb on - strand at 487.026 kb on - strand at 487.026 kb on - strand at 487.067 kb on + strand at 487.067 kb on + strand at 487.068 kb on - strand at 487.068 kb on - strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.690 kb on + strand at 487.691 kb on - strand at 487.691 kb on - strand at 487.691 kb on - strand at 487.701 kb on - strand at 487.754 kb on + strand at 487.755 kb on - strand at 487.755 kb on - strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.790 kb on + strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.791 kb on - strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.792 kb on + strand at 487.793 kb on - strand at 487.793 kb on - strand at 487.793 kb on - strand at 487.800 kb on + strand at 487.800 kb on + strand at 487.801 kb on - strand at 487.801 kb on - strand at 487.801 kb on - strand at 487.804 kb on - strand at 487.804 kb on - strand at 487.932 kb on - strand, within AO353_02290 at 487.932 kb on - strand, within AO353_02290
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 485,542 + AO353_02270 0.25 -0.1 485,595 + AO353_02270 0.34 -0.2 485,595 + AO353_02270 0.34 +2.8 485,595 + +0.6 485,596 - AO353_02270 0.34 +0.3 485,596 - AO353_02270 0.34 -2.1 485,596 - AO353_02270 0.34 +0.2 485,596 - AO353_02270 0.34 -0.6 485,596 - AO353_02270 0.34 -0.6 485,596 - AO353_02270 0.34 +1.9 485,596 - AO353_02270 0.34 +1.2 485,596 - AO353_02270 0.34 -0.6 485,596 - AO353_02270 0.34 +0.8 485,803 + AO353_02270 0.69 +0.7 485,804 - AO353_02270 0.70 -0.1 485,804 - AO353_02270 0.70 +0.3 486,052 + -0.8 486,341 + AO353_02275 0.70 +0.3 486,341 + AO353_02275 0.70 -0.4 486,341 + AO353_02275 0.70 -0.6 486,341 + AO353_02275 0.70 +0.0 486,341 + AO353_02275 0.70 -0.8 486,341 + AO353_02275 0.70 -0.2 486,342 - AO353_02275 0.70 -1.7 486,342 - AO353_02275 0.70 +0.0 486,342 - AO353_02275 0.70 +0.6 486,342 - AO353_02275 0.70 +3.3 486,342 - AO353_02275 0.70 -1.6 486,342 - AO353_02275 0.70 -1.0 486,906 + AO353_02280 0.71 -1.9 486,906 + AO353_02280 0.71 -0.3 486,906 + AO353_02280 0.71 -0.8 486,906 + AO353_02280 0.71 -1.5 487,025 + -0.2 487,025 + -3.2 487,025 + -1.8 487,026 - -1.7 487,026 - -1.3 487,026 - +1.8 487,026 - +1.7 487,026 - +1.5 487,067 + -0.4 487,067 + -0.8 487,068 - +0.2 487,068 - -0.7 487,690 + -0.2 487,690 + -0.8 487,690 + +0.0 487,690 + +0.6 487,691 - -2.1 487,691 - -0.4 487,691 - -2.8 487,701 - -0.4 487,754 + -0.4 487,755 - +1.6 487,755 - +0.2 487,790 + -1.7 487,790 + -0.4 487,790 + -0.7 487,790 + -1.3 487,790 + +0.6 487,790 + -0.7 487,790 + +0.2 487,790 + +1.2 487,790 + -0.9 487,791 - -0.8 487,791 - -1.1 487,791 - +0.1 487,791 - -0.9 487,791 - -1.0 487,791 - +0.6 487,791 - +1.2 487,791 - +0.0 487,791 - -2.5 487,791 - -0.1 487,791 - -1.2 487,791 - +1.0 487,792 + -1.2 487,792 + +0.1 487,792 + +0.8 487,792 + -0.4 487,793 - -0.0 487,793 - -1.2 487,793 - +1.2 487,800 + -0.4 487,800 + +1.4 487,801 - -0.2 487,801 - +1.2 487,801 - +0.2 487,804 - +0.6 487,804 - +0.2 487,932 - AO353_02290 0.37 +1.5 487,932 - AO353_02290 0.37 +0.6
Or see this region's nucleotide sequence