Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02185 and AO353_02190 are separated by 222 nucleotides AO353_02190 and AO353_02195 are separated by 314 nucleotides
AO353_02185: AO353_02185 - short-chain dehydrogenase, at 468,519 to 469,334
_02185
AO353_02190: AO353_02190 - hypothetical protein, at 469,557 to 471,650
_02190
AO353_02195: AO353_02195 - spermidine synthase, at 471,965 to 472,840
_02195
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 468.580 kb on + strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.581 kb on - strand at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.673 kb on + strand, within AO353_02185 at 468.674 kb on - strand, within AO353_02185 at 468.674 kb on - strand, within AO353_02185 at 468.674 kb on - strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.679 kb on + strand, within AO353_02185 at 468.680 kb on - strand, within AO353_02185 at 468.680 kb on - strand, within AO353_02185 at 468.680 kb on - strand, within AO353_02185 at 468.680 kb on - strand, within AO353_02185 at 468.680 kb on - strand, within AO353_02185 at 468.690 kb on - strand, within AO353_02185 at 468.886 kb on + strand, within AO353_02185 at 468.886 kb on + strand, within AO353_02185 at 468.886 kb on + strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.887 kb on - strand, within AO353_02185 at 468.950 kb on + strand, within AO353_02185 at 469.147 kb on + strand, within AO353_02185 at 469.147 kb on + strand, within AO353_02185 at 469.147 kb on + strand, within AO353_02185 at 469.148 kb on - strand, within AO353_02185 at 469.377 kb on - strand at 469.547 kb on + strand at 469.547 kb on + strand at 469.558 kb on + strand at 469.558 kb on + strand at 469.558 kb on + strand at 469.709 kb on - strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.714 kb on + strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.715 kb on - strand at 469.837 kb on - strand, within AO353_02190 at 469.837 kb on - strand, within AO353_02190 at 469.837 kb on - strand, within AO353_02190 at 470.077 kb on + strand, within AO353_02190 at 470.077 kb on + strand, within AO353_02190 at 470.077 kb on + strand, within AO353_02190 at 470.077 kb on + strand, within AO353_02190 at 470.078 kb on - strand, within AO353_02190 at 470.078 kb on - strand, within AO353_02190 at 470.206 kb on + strand, within AO353_02190 at 470.345 kb on - strand, within AO353_02190 at 470.345 kb on - strand, within AO353_02190 at 470.345 kb on - strand, within AO353_02190 at 470.425 kb on + strand, within AO353_02190 at 470.425 kb on + strand, within AO353_02190 at 470.425 kb on + strand, within AO353_02190 at 470.425 kb on + strand, within AO353_02190 at 470.425 kb on + strand, within AO353_02190 at 470.426 kb on - strand, within AO353_02190 at 470.426 kb on - strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.431 kb on + strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.432 kb on - strand, within AO353_02190 at 470.443 kb on + strand, within AO353_02190 at 470.443 kb on + strand, within AO353_02190 at 470.443 kb on + strand, within AO353_02190 at 470.444 kb on - strand, within AO353_02190 at 470.444 kb on - strand, within AO353_02190 at 470.444 kb on - strand, within AO353_02190 at 470.447 kb on + strand, within AO353_02190 at 470.512 kb on + strand, within AO353_02190 at 470.513 kb on - strand, within AO353_02190 at 470.558 kb on + strand, within AO353_02190 at 470.558 kb on + strand, within AO353_02190 at 470.558 kb on + strand, within AO353_02190 at 470.559 kb on - strand, within AO353_02190 at 470.559 kb on - strand, within AO353_02190 at 470.570 kb on + strand, within AO353_02190 at 470.571 kb on - strand, within AO353_02190 at 470.624 kb on + strand, within AO353_02190 at 470.624 kb on + strand, within AO353_02190 at 470.746 kb on + strand, within AO353_02190 at 470.786 kb on + strand, within AO353_02190 at 470.786 kb on + strand, within AO353_02190 at 470.787 kb on - strand, within AO353_02190 at 470.956 kb on + strand, within AO353_02190 at 470.956 kb on + strand, within AO353_02190 at 470.956 kb on + strand, within AO353_02190 at 470.956 kb on + strand, within AO353_02190 at 470.957 kb on - strand, within AO353_02190 at 470.957 kb on - strand at 470.957 kb on - strand, within AO353_02190 at 470.957 kb on - strand, within AO353_02190 at 471.066 kb on + strand, within AO353_02190 at 471.202 kb on + strand, within AO353_02190 at 471.203 kb on - strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.244 kb on + strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.245 kb on - strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.399 kb on + strand, within AO353_02190 at 471.400 kb on - strand, within AO353_02190 at 471.415 kb on + strand, within AO353_02190 at 471.415 kb on + strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.416 kb on - strand, within AO353_02190 at 471.505 kb on + strand at 471.505 kb on + strand at 471.505 kb on + strand at 471.505 kb on + strand at 471.505 kb on + strand at 471.571 kb on + strand at 471.572 kb on - strand at 471.572 kb on - strand at 471.572 kb on - strand at 471.629 kb on + strand at 471.630 kb on - strand at 471.657 kb on + strand at 471.658 kb on - strand at 471.659 kb on + strand at 471.660 kb on - strand at 471.660 kb on - strand at 471.660 kb on - strand at 471.660 kb on - strand at 471.719 kb on + strand at 471.719 kb on + strand at 471.720 kb on - strand at 471.720 kb on - strand at 471.720 kb on - strand at 471.792 kb on + strand at 471.792 kb on + strand at 471.793 kb on - strand at 471.861 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.914 kb on + strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.915 kb on - strand at 471.916 kb on + strand at 471.916 kb on + strand at 471.917 kb on - strand at 471.966 kb on + strand at 471.966 kb on + strand at 471.967 kb on - strand at 471.973 kb on + strand at 471.973 kb on + strand at 471.974 kb on - strand at 471.974 kb on - strand at 471.974 kb on - strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.002 kb on + strand at 472.003 kb on - strand at 472.027 kb on + strand at 472.028 kb on - strand at 472.044 kb on + strand at 472.044 kb on + strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.045 kb on - strand at 472.048 kb on - strand at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.158 kb on + strand, within AO353_02195 at 472.180 kb on - strand, within AO353_02195 at 472.276 kb on + strand, within AO353_02195 at 472.311 kb on + strand, within AO353_02195 at 472.312 kb on - strand, within AO353_02195 at 472.647 kb on + strand, within AO353_02195 at 472.647 kb on + strand, within AO353_02195 at 472.648 kb on - strand, within AO353_02195 at 472.648 kb on - strand, within AO353_02195 at 472.648 kb on - strand, within AO353_02195
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 468,580 + -0.5 468,581 - +0.7 468,581 - -0.5 468,581 - +1.2 468,673 + AO353_02185 0.19 -2.4 468,673 + AO353_02185 0.19 -1.8 468,673 + AO353_02185 0.19 -2.1 468,673 + AO353_02185 0.19 -0.7 468,673 + AO353_02185 0.19 -0.8 468,673 + AO353_02185 0.19 +0.5 468,673 + AO353_02185 0.19 +0.3 468,673 + AO353_02185 0.19 +0.5 468,673 + AO353_02185 0.19 -1.2 468,673 + AO353_02185 0.19 -0.3 468,673 + AO353_02185 0.19 +0.3 468,673 + AO353_02185 0.19 +0.9 468,674 - AO353_02185 0.19 +0.0 468,674 - AO353_02185 0.19 -1.4 468,674 - AO353_02185 0.19 +0.7 468,679 + AO353_02185 0.20 +0.2 468,679 + AO353_02185 0.20 +0.2 468,679 + AO353_02185 0.20 -1.8 468,679 + AO353_02185 0.20 -1.5 468,679 + AO353_02185 0.20 -0.9 468,679 + AO353_02185 0.20 +0.7 468,679 + AO353_02185 0.20 -1.9 468,679 + AO353_02185 0.20 -0.8 468,680 - AO353_02185 0.20 -0.0 468,680 - AO353_02185 0.20 +0.6 468,680 - AO353_02185 0.20 -0.3 468,680 - AO353_02185 0.20 -0.8 468,680 - AO353_02185 0.20 +0.2 468,690 - AO353_02185 0.21 -1.3 468,886 + AO353_02185 0.45 +0.9 468,886 + AO353_02185 0.45 -0.0 468,886 + AO353_02185 0.45 +0.3 468,887 - AO353_02185 0.45 +1.2 468,887 - AO353_02185 0.45 +0.6 468,887 - AO353_02185 0.45 +0.1 468,887 - AO353_02185 0.45 -0.7 468,887 - AO353_02185 0.45 -0.5 468,887 - AO353_02185 0.45 -0.8 468,887 - AO353_02185 0.45 -2.0 468,887 - AO353_02185 0.45 -0.4 468,950 + AO353_02185 0.53 -0.7 469,147 + AO353_02185 0.77 +3.2 469,147 + AO353_02185 0.77 -1.0 469,147 + AO353_02185 0.77 -1.2 469,148 - AO353_02185 0.77 -0.2 469,377 - -1.2 469,547 + +0.5 469,547 + +1.6 469,558 + -0.2 469,558 + -1.5 469,558 + -1.8 469,709 - +2.2 469,714 + -1.6 469,714 + -1.0 469,714 + -3.6 469,714 + +0.2 469,714 + -0.4 469,714 + -0.7 469,714 + -1.3 469,714 + -2.4 469,715 - +0.2 469,715 - +1.2 469,715 - +0.2 469,715 - -0.7 469,715 - +0.2 469,715 - -1.4 469,715 - -0.8 469,715 - -1.7 469,715 - -2.7 469,837 - AO353_02190 0.13 -1.0 469,837 - AO353_02190 0.13 -1.2 469,837 - AO353_02190 0.13 +0.6 470,077 + AO353_02190 0.25 -0.7 470,077 + AO353_02190 0.25 -2.8 470,077 + AO353_02190 0.25 -0.4 470,077 + AO353_02190 0.25 +0.2 470,078 - AO353_02190 0.25 -2.1 470,078 - AO353_02190 0.25 -1.5 470,206 + AO353_02190 0.31 -0.7 470,345 - AO353_02190 0.38 -1.4 470,345 - AO353_02190 0.38 -2.2 470,345 - AO353_02190 0.38 -1.2 470,425 + AO353_02190 0.41 +0.6 470,425 + AO353_02190 0.41 -1.5 470,425 + AO353_02190 0.41 -2.1 470,425 + AO353_02190 0.41 +0.6 470,425 + AO353_02190 0.41 -0.7 470,426 - AO353_02190 0.41 +0.4 470,426 - AO353_02190 0.41 -0.8 470,431 + AO353_02190 0.42 -1.7 470,431 + AO353_02190 0.42 -0.8 470,431 + AO353_02190 0.42 -0.7 470,431 + AO353_02190 0.42 -1.9 470,431 + AO353_02190 0.42 +0.8 470,431 + AO353_02190 0.42 -2.3 470,431 + AO353_02190 0.42 -2.2 470,431 + AO353_02190 0.42 -2.7 470,431 + AO353_02190 0.42 -0.2 470,431 + AO353_02190 0.42 -0.5 470,431 + AO353_02190 0.42 -0.9 470,431 + AO353_02190 0.42 -0.7 470,431 + AO353_02190 0.42 -0.4 470,432 - AO353_02190 0.42 +1.0 470,432 - AO353_02190 0.42 +0.3 470,432 - AO353_02190 0.42 -0.8 470,432 - AO353_02190 0.42 -1.8 470,432 - AO353_02190 0.42 +0.9 470,432 - AO353_02190 0.42 -0.7 470,432 - AO353_02190 0.42 -1.4 470,432 - AO353_02190 0.42 -1.3 470,432 - AO353_02190 0.42 -2.2 470,432 - AO353_02190 0.42 -1.8 470,432 - AO353_02190 0.42 -1.8 470,432 - AO353_02190 0.42 -1.5 470,443 + AO353_02190 0.42 -3.1 470,443 + AO353_02190 0.42 -2.5 470,443 + AO353_02190 0.42 -1.3 470,444 - AO353_02190 0.42 -1.4 470,444 - AO353_02190 0.42 -1.0 470,444 - AO353_02190 0.42 -2.8 470,447 + AO353_02190 0.43 -1.5 470,512 + AO353_02190 0.46 -2.4 470,513 - AO353_02190 0.46 -0.8 470,558 + AO353_02190 0.48 -1.0 470,558 + AO353_02190 0.48 -1.8 470,558 + AO353_02190 0.48 -1.3 470,559 - AO353_02190 0.48 -1.5 470,559 - AO353_02190 0.48 -1.3 470,570 + AO353_02190 0.48 -0.2 470,571 - AO353_02190 0.48 -0.7 470,624 + AO353_02190 0.51 -1.9 470,624 + AO353_02190 0.51 -2.6 470,746 + AO353_02190 0.57 -1.2 470,786 + AO353_02190 0.59 +0.2 470,786 + AO353_02190 0.59 -3.5 470,787 - AO353_02190 0.59 -2.2 470,956 + AO353_02190 0.67 +0.2 470,956 + AO353_02190 0.67 -1.0 470,956 + AO353_02190 0.67 -1.5 470,956 + AO353_02190 0.67 -0.4 470,957 - AO353_02190 0.67 -2.6 470,957 - +1.2 470,957 - AO353_02190 0.67 -3.5 470,957 - AO353_02190 0.67 -2.2 471,066 + AO353_02190 0.72 -1.3 471,202 + AO353_02190 0.79 -0.8 471,203 - AO353_02190 0.79 +0.7 471,244 + AO353_02190 0.81 -1.8 471,244 + AO353_02190 0.81 +0.9 471,244 + AO353_02190 0.81 -1.9 471,244 + AO353_02190 0.81 -1.7 471,245 - AO353_02190 0.81 -1.5 471,245 - AO353_02190 0.81 -2.5 471,245 - AO353_02190 0.81 -2.6 471,245 - AO353_02190 0.81 -1.4 471,399 + AO353_02190 0.88 -1.0 471,399 + AO353_02190 0.88 +0.2 471,399 + AO353_02190 0.88 -1.2 471,399 + AO353_02190 0.88 +0.3 471,400 - AO353_02190 0.88 -1.8 471,415 + AO353_02190 0.89 -1.4 471,415 + AO353_02190 0.89 -1.2 471,416 - AO353_02190 0.89 -1.0 471,416 - AO353_02190 0.89 -2.1 471,416 - AO353_02190 0.89 +0.2 471,416 - AO353_02190 0.89 -2.0 471,416 - AO353_02190 0.89 -1.2 471,505 + -1.5 471,505 + -0.4 471,505 + -2.0 471,505 + -0.7 471,505 + -1.5 471,571 + -2.0 471,572 - -2.9 471,572 - -0.7 471,572 - -0.6 471,629 + -1.9 471,630 - -0.7 471,657 + -1.2 471,658 - -0.3 471,659 + -1.6 471,660 - -3.7 471,660 - +1.4 471,660 - -2.0 471,660 - -0.8 471,719 + -2.5 471,719 + -0.9 471,720 - +1.2 471,720 - +1.2 471,720 - -0.1 471,792 + -0.4 471,792 + -0.7 471,793 - +0.8 471,861 + -1.8 471,914 + -0.2 471,914 + -1.0 471,914 + -1.5 471,914 + -1.4 471,914 + -0.7 471,914 + -1.1 471,914 + -2.2 471,914 + -1.5 471,914 + -1.7 471,915 - +0.8 471,915 - +1.8 471,915 - +0.7 471,915 - -2.4 471,915 - -1.3 471,915 - -0.4 471,915 - -0.5 471,915 - -1.0 471,915 - -1.8 471,915 - -0.8 471,915 - -1.4 471,916 + +0.6 471,916 + -0.8 471,917 - -0.4 471,966 + -0.7 471,966 + -1.1 471,967 - -0.8 471,973 + -0.4 471,973 + -0.6 471,974 - -0.2 471,974 - +0.8 471,974 - +0.8 472,002 + +1.6 472,002 + -0.7 472,002 + +0.6 472,002 + +1.6 472,002 + +0.6 472,003 - +2.4 472,027 + +1.1 472,028 - +3.2 472,044 + +0.8 472,044 + +0.4 472,045 - +0.9 472,045 - +2.2 472,045 - +1.1 472,045 - +2.7 472,045 - +0.9 472,048 - +1.6 472,158 + AO353_02195 0.22 +2.7 472,158 + AO353_02195 0.22 +0.5 472,158 + AO353_02195 0.22 +1.8 472,158 + AO353_02195 0.22 +0.9 472,158 + AO353_02195 0.22 -1.8 472,158 + AO353_02195 0.22 +3.0 472,158 + AO353_02195 0.22 +0.7 472,180 - AO353_02195 0.25 +0.7 472,276 + AO353_02195 0.36 +2.9 472,311 + AO353_02195 0.39 +1.2 472,312 - AO353_02195 0.40 +1.2 472,647 + AO353_02195 0.78 +3.3 472,647 + AO353_02195 0.78 -0.4 472,648 - AO353_02195 0.78 +0.1 472,648 - AO353_02195 0.78 +2.5 472,648 - AO353_02195 0.78 +1.6
Or see this region's nucleotide sequence