Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01475 and AO353_01480 are separated by 345 nucleotides AO353_01480 and AO353_01485 overlap by 4 nucleotides
AO353_01475: AO353_01475 - hypothetical protein, at 316,517 to 316,891
_01475
AO353_01480: AO353_01480 - hypothetical protein, at 317,237 to 318,016
_01480
AO353_01485: AO353_01485 - ABC transporter, at 318,013 to 318,945
_01485
Position (kb) 317
318
319 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 316.275 kb on + strand at 316.275 kb on + strand at 316.276 kb on - strand at 316.276 kb on - strand at 316.276 kb on - strand at 316.368 kb on + strand at 316.368 kb on + strand at 316.374 kb on + strand at 316.374 kb on + strand at 316.375 kb on - strand at 316.375 kb on - strand at 316.389 kb on - strand at 316.455 kb on + strand at 316.456 kb on - strand at 316.456 kb on - strand at 316.509 kb on + strand at 316.509 kb on + strand at 316.509 kb on + strand at 316.510 kb on - strand at 316.510 kb on - strand at 316.510 kb on - strand at 316.510 kb on - strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.513 kb on + strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.514 kb on - strand at 316.565 kb on + strand, within AO353_01475 at 316.565 kb on + strand, within AO353_01475 at 316.622 kb on + strand, within AO353_01475 at 316.622 kb on + strand, within AO353_01475 at 316.889 kb on + strand at 316.933 kb on - strand at 316.933 kb on - strand at 317.117 kb on + strand at 317.117 kb on + strand at 317.131 kb on + strand at 317.132 kb on - strand at 317.158 kb on + strand at 317.158 kb on + strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.159 kb on - strand at 317.161 kb on + strand at 317.161 kb on + strand at 317.162 kb on - strand at 317.162 kb on - strand at 317.162 kb on - strand at 317.162 kb on - strand at 317.162 kb on - strand at 317.162 kb on - strand at 317.238 kb on + strand at 317.238 kb on + strand at 317.238 kb on + strand at 317.238 kb on + strand at 317.239 kb on - strand at 317.239 kb on - strand at 317.239 kb on - strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.286 kb on + strand at 317.287 kb on - strand at 317.287 kb on - strand at 317.287 kb on - strand at 317.287 kb on - strand at 317.287 kb on - strand at 317.294 kb on + strand at 317.294 kb on + strand at 317.295 kb on - strand at 317.304 kb on - strand at 317.304 kb on - strand at 317.317 kb on + strand, within AO353_01480 at 317.443 kb on - strand, within AO353_01480 at 317.443 kb on - strand, within AO353_01480 at 317.443 kb on - strand, within AO353_01480 at 317.461 kb on - strand, within AO353_01480 at 317.461 kb on - strand, within AO353_01480 at 317.461 kb on - strand, within AO353_01480 at 317.585 kb on - strand, within AO353_01480 at 317.682 kb on + strand, within AO353_01480 at 317.683 kb on - strand, within AO353_01480 at 317.782 kb on - strand, within AO353_01480 at 317.826 kb on + strand, within AO353_01480 at 317.826 kb on + strand, within AO353_01480 at 317.826 kb on + strand, within AO353_01480 at 317.826 kb on + strand, within AO353_01480 at 317.826 kb on + strand, within AO353_01480 at 317.826 kb on + strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.827 kb on - strand, within AO353_01480 at 317.833 kb on + strand, within AO353_01480 at 317.833 kb on + strand, within AO353_01480 at 317.834 kb on - strand, within AO353_01480 at 317.834 kb on - strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.835 kb on + strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.836 kb on - strand, within AO353_01480 at 317.851 kb on + strand, within AO353_01480 at 317.878 kb on + strand, within AO353_01480 at 317.895 kb on + strand, within AO353_01480 at 317.895 kb on + strand, within AO353_01480 at 317.896 kb on - strand, within AO353_01480 at 317.896 kb on - strand, within AO353_01480 at 317.947 kb on + strand at 317.977 kb on + strand at 317.977 kb on + strand at 318.016 kb on + strand at 318.017 kb on - strand at 318.017 kb on - strand at 318.282 kb on + strand, within AO353_01485 at 318.362 kb on + strand, within AO353_01485 at 318.363 kb on - strand, within AO353_01485 at 318.363 kb on - strand, within AO353_01485 at 318.363 kb on - strand, within AO353_01485 at 318.587 kb on + strand, within AO353_01485 at 318.587 kb on + strand, within AO353_01485 at 318.587 kb on + strand, within AO353_01485 at 318.588 kb on - strand, within AO353_01485 at 318.588 kb on - strand, within AO353_01485 at 318.588 kb on - strand, within AO353_01485 at 318.588 kb on - strand, within AO353_01485 at 318.588 kb on - strand, within AO353_01485 at 318.629 kb on + strand, within AO353_01485 at 318.629 kb on + strand, within AO353_01485 at 318.632 kb on + strand, within AO353_01485 at 318.652 kb on + strand, within AO353_01485 at 318.652 kb on + strand, within AO353_01485 at 318.652 kb on + strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.653 kb on - strand, within AO353_01485 at 318.756 kb on + strand, within AO353_01485 at 318.756 kb on + strand, within AO353_01485 at 318.756 kb on + strand, within AO353_01485 at 318.756 kb on + strand, within AO353_01485 at 318.756 kb on + strand, within AO353_01485 at 318.757 kb on - strand, within AO353_01485 at 318.757 kb on - strand, within AO353_01485 at 318.905 kb on + strand at 318.905 kb on + strand at 318.906 kb on - strand at 318.906 kb on - strand at 318.906 kb on - strand at 318.954 kb on + strand at 318.955 kb on - strand at 318.955 kb on - strand at 318.980 kb on + strand at 318.980 kb on + strand at 318.980 kb on + strand at 318.980 kb on + strand at 318.984 kb on + strand at 318.984 kb on + strand at 318.984 kb on + strand at 318.984 kb on + strand at 318.984 kb on + strand at 318.984 kb on + strand at 318.985 kb on - strand at 318.985 kb on - strand at 318.985 kb on - strand at 318.985 kb on - strand at 318.985 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 316,275 + +0.3 316,275 + -0.2 316,276 - +1.2 316,276 - +0.8 316,276 - +1.6 316,368 + -1.2 316,368 + +0.7 316,374 + -2.4 316,374 + -0.3 316,375 - -0.5 316,375 - -1.2 316,389 - -0.5 316,455 + -0.5 316,456 - -0.3 316,456 - +0.6 316,509 + -2.0 316,509 + -0.5 316,509 + -0.3 316,510 - -0.6 316,510 - +0.8 316,510 - +1.9 316,510 - +1.4 316,513 + +2.8 316,513 + +1.2 316,513 + -1.2 316,513 + -1.1 316,513 + +1.1 316,513 + -0.8 316,513 + -1.9 316,513 + -0.4 316,513 + -0.2 316,513 + -0.6 316,513 + +1.6 316,513 + -1.3 316,513 + +1.8 316,513 + +0.6 316,513 + -1.6 316,514 - -1.5 316,514 - +0.6 316,514 - +0.2 316,514 - +0.3 316,514 - +0.3 316,514 - +1.4 316,514 - -0.8 316,514 - -0.0 316,514 - +0.9 316,514 - -1.8 316,565 + AO353_01475 0.13 -1.3 316,565 + AO353_01475 0.13 +0.7 316,622 + AO353_01475 0.28 +1.2 316,622 + AO353_01475 0.28 +1.4 316,889 + +0.2 316,933 - -1.9 316,933 - -2.1 317,117 + -0.6 317,117 + +0.3 317,131 + -1.4 317,132 - -0.2 317,158 + -0.2 317,158 + -0.7 317,159 - -0.4 317,159 - -1.4 317,159 - +0.6 317,159 - -0.4 317,159 - +0.2 317,159 - -0.1 317,161 + +0.9 317,161 + +1.0 317,162 - -0.4 317,162 - +0.9 317,162 - +1.0 317,162 - +0.4 317,162 - +1.8 317,162 - +2.2 317,238 + -0.7 317,238 + -1.2 317,238 + +0.1 317,238 + -0.4 317,239 - -1.5 317,239 - +1.4 317,239 - +0.0 317,286 + +1.3 317,286 + +3.2 317,286 + +0.6 317,286 + +0.8 317,286 + +2.0 317,286 + +0.6 317,286 + +1.6 317,286 + +1.9 317,286 + +2.4 317,286 + +1.9 317,286 + +1.2 317,287 - +2.0 317,287 - +0.9 317,287 - +2.5 317,287 - +2.8 317,287 - +0.2 317,294 + -1.8 317,294 + +2.3 317,295 - +1.9 317,304 - +1.9 317,304 - -0.2 317,317 + AO353_01480 0.10 +0.2 317,443 - AO353_01480 0.26 +0.6 317,443 - AO353_01480 0.26 +1.2 317,443 - AO353_01480 0.26 +0.6 317,461 - AO353_01480 0.29 +1.2 317,461 - AO353_01480 0.29 +1.7 317,461 - AO353_01480 0.29 -0.2 317,585 - AO353_01480 0.45 +0.7 317,682 + AO353_01480 0.57 +1.7 317,683 - AO353_01480 0.57 +2.6 317,782 - AO353_01480 0.70 +1.4 317,826 + AO353_01480 0.76 +1.8 317,826 + AO353_01480 0.76 +1.2 317,826 + AO353_01480 0.76 +1.2 317,826 + AO353_01480 0.76 +0.7 317,826 + AO353_01480 0.76 +1.7 317,826 + AO353_01480 0.76 +1.1 317,827 - AO353_01480 0.76 +1.3 317,827 - AO353_01480 0.76 +0.4 317,827 - AO353_01480 0.76 +0.6 317,827 - AO353_01480 0.76 +1.6 317,827 - AO353_01480 0.76 +1.8 317,827 - AO353_01480 0.76 +1.3 317,827 - AO353_01480 0.76 +0.4 317,827 - AO353_01480 0.76 -0.3 317,827 - AO353_01480 0.76 +1.8 317,827 - AO353_01480 0.76 +1.2 317,833 + AO353_01480 0.76 +2.2 317,833 + AO353_01480 0.76 +0.9 317,834 - AO353_01480 0.77 +1.2 317,834 - AO353_01480 0.77 +2.2 317,835 + AO353_01480 0.77 +1.6 317,835 + AO353_01480 0.77 +2.2 317,835 + AO353_01480 0.77 +1.2 317,835 + AO353_01480 0.77 -0.0 317,835 + AO353_01480 0.77 +2.1 317,835 + AO353_01480 0.77 +1.9 317,835 + AO353_01480 0.77 +1.0 317,836 - AO353_01480 0.77 +1.4 317,836 - AO353_01480 0.77 +1.8 317,836 - AO353_01480 0.77 +1.1 317,836 - AO353_01480 0.77 +2.2 317,836 - AO353_01480 0.77 +2.2 317,836 - AO353_01480 0.77 +1.2 317,836 - AO353_01480 0.77 +1.0 317,836 - AO353_01480 0.77 +0.8 317,851 + AO353_01480 0.79 +1.5 317,878 + AO353_01480 0.82 -0.6 317,895 + AO353_01480 0.84 +1.4 317,895 + AO353_01480 0.84 +1.5 317,896 - AO353_01480 0.84 +1.2 317,896 - AO353_01480 0.84 +1.7 317,947 + +0.6 317,977 + +1.7 317,977 + -0.8 318,016 + +2.2 318,017 - +2.0 318,017 - -0.5 318,282 + AO353_01485 0.29 +1.0 318,362 + AO353_01485 0.37 +2.2 318,363 - AO353_01485 0.38 +1.4 318,363 - AO353_01485 0.38 +2.7 318,363 - AO353_01485 0.38 +2.0 318,587 + AO353_01485 0.62 +1.2 318,587 + AO353_01485 0.62 -0.2 318,587 + AO353_01485 0.62 -0.9 318,588 - AO353_01485 0.62 +0.4 318,588 - AO353_01485 0.62 -0.8 318,588 - AO353_01485 0.62 -0.6 318,588 - AO353_01485 0.62 +1.8 318,588 - AO353_01485 0.62 +1.2 318,629 + AO353_01485 0.66 +2.5 318,629 + AO353_01485 0.66 +2.1 318,632 + AO353_01485 0.66 +0.5 318,652 + AO353_01485 0.68 +1.6 318,652 + AO353_01485 0.68 -0.6 318,652 + AO353_01485 0.68 +0.9 318,653 - AO353_01485 0.69 +0.9 318,653 - AO353_01485 0.69 +1.8 318,653 - AO353_01485 0.69 +0.9 318,653 - AO353_01485 0.69 +2.2 318,653 - AO353_01485 0.69 +1.2 318,653 - AO353_01485 0.69 +1.8 318,653 - AO353_01485 0.69 +1.7 318,653 - AO353_01485 0.69 +1.4 318,756 + AO353_01485 0.80 +1.3 318,756 + AO353_01485 0.80 +0.6 318,756 + AO353_01485 0.80 -0.2 318,756 + AO353_01485 0.80 +2.4 318,756 + AO353_01485 0.80 +1.6 318,757 - AO353_01485 0.80 +0.7 318,757 - AO353_01485 0.80 +1.7 318,905 + -0.0 318,905 + +1.6 318,906 - +1.4 318,906 - +3.0 318,906 - -0.2 318,954 + +1.8 318,955 - +2.2 318,955 - +0.9 318,980 + +1.4 318,980 + +1.2 318,980 + +0.7 318,980 + -0.2 318,984 + +1.9 318,984 + +1.5 318,984 + +1.4 318,984 + +1.5 318,984 + +0.0 318,984 + +0.3 318,985 - -0.9 318,985 - -0.0 318,985 - +0.4 318,985 - +1.0 318,985 - +4.0
Or see this region's nucleotide sequence