Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01325 and AO353_01330 are separated by 12 nucleotides AO353_01330 and AO353_01335 are separated by 42 nucleotides AO353_01335 and AO353_01340 overlap by 8 nucleotides AO353_01340 and AO353_01345 are separated by 19 nucleotides
AO353_01325: AO353_01325 - hydrolase TatD, at 287,395 to 288,183
_01325
AO353_01330: AO353_01330 - pilus assembly protein PilZ, at 288,196 to 288,552
_01330
AO353_01335: AO353_01335 - DNA polymerase III subunit delta', at 288,595 to 289,581
_01335
AO353_01340: AO353_01340 - thymidylate kinase, at 289,574 to 290,206
_01340
AO353_01345: AO353_01345 - aminodeoxychorismate lyase, at 290,226 to 291,416
_01345
Position (kb) 288
289
290 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 287.664 kb on + strand, within AO353_01325 at 287.664 kb on + strand, within AO353_01325 at 287.665 kb on - strand, within AO353_01325 at 287.666 kb on + strand, within AO353_01325 at 287.667 kb on - strand, within AO353_01325 at 287.667 kb on - strand, within AO353_01325 at 287.769 kb on + strand, within AO353_01325 at 287.879 kb on + strand, within AO353_01325 at 287.879 kb on + strand, within AO353_01325 at 287.885 kb on + strand, within AO353_01325 at 287.886 kb on - strand, within AO353_01325 at 288.018 kb on - strand, within AO353_01325 at 288.175 kb on + strand at 288.175 kb on + strand at 288.175 kb on + strand at 288.176 kb on - strand at 288.176 kb on - strand at 288.183 kb on + strand at 288.183 kb on + strand at 288.183 kb on + strand at 288.183 kb on + strand at 288.184 kb on - strand at 288.184 kb on - strand at 288.184 kb on - strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.197 kb on + strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.204 kb on + strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.205 kb on - strand at 288.242 kb on + strand, within AO353_01330 at 288.242 kb on + strand, within AO353_01330 at 288.334 kb on - strand, within AO353_01330 at 288.400 kb on + strand, within AO353_01330 at 288.400 kb on + strand, within AO353_01330 at 288.401 kb on - strand, within AO353_01330 at 288.419 kb on + strand, within AO353_01330 at 288.419 kb on + strand, within AO353_01330 at 288.419 kb on + strand, within AO353_01330 at 288.419 kb on + strand, within AO353_01330 at 288.419 kb on + strand, within AO353_01330 at 288.420 kb on - strand, within AO353_01330 at 288.420 kb on - strand, within AO353_01330 at 288.470 kb on + strand, within AO353_01330 at 288.470 kb on + strand, within AO353_01330 at 288.470 kb on + strand, within AO353_01330 at 288.470 kb on + strand, within AO353_01330 at 288.470 kb on + strand, within AO353_01330 at 288.471 kb on - strand, within AO353_01330 at 288.471 kb on - strand, within AO353_01330 at 288.471 kb on - strand, within AO353_01330 at 288.471 kb on - strand, within AO353_01330 at 288.471 kb on - strand at 288.471 kb on - strand, within AO353_01330 at 288.471 kb on - strand, within AO353_01330 at 288.471 kb on - strand, within AO353_01330 at 288.479 kb on + strand, within AO353_01330 at 288.582 kb on + strand at 288.582 kb on + strand at 290.504 kb on - strand, within AO353_01345 at 290.504 kb on - strand, within AO353_01345 at 290.504 kb on - strand, within AO353_01345 at 290.504 kb on - strand, within AO353_01345 at 290.506 kb on - strand, within AO353_01345 at 290.506 kb on - strand, within AO353_01345 at 290.506 kb on - strand, within AO353_01345
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 287,664 + AO353_01325 0.34 -2.2 287,664 + AO353_01325 0.34 -1.0 287,665 - AO353_01325 0.34 -1.0 287,666 + AO353_01325 0.34 -1.3 287,667 - AO353_01325 0.34 -0.1 287,667 - AO353_01325 0.34 -1.0 287,769 + AO353_01325 0.47 -0.9 287,879 + AO353_01325 0.61 +1.0 287,879 + AO353_01325 0.61 -0.4 287,885 + AO353_01325 0.62 +3.0 287,886 - AO353_01325 0.62 -0.9 288,018 - AO353_01325 0.79 -1.4 288,175 + -0.2 288,175 + +0.6 288,175 + +1.1 288,176 - -0.2 288,176 - +0.7 288,183 + +0.0 288,183 + -0.8 288,183 + +0.8 288,183 + +0.3 288,184 - -0.2 288,184 - -1.5 288,184 - +0.6 288,197 + +0.5 288,197 + +0.6 288,197 + -0.4 288,197 + -0.2 288,197 + -0.2 288,197 + -0.2 288,197 + -1.4 288,197 + +0.4 288,198 - +1.0 288,198 - -1.7 288,198 - +0.4 288,198 - -0.4 288,198 - +0.4 288,198 - +0.2 288,198 - +0.5 288,198 - -0.6 288,198 - +0.9 288,198 - -0.4 288,198 - +1.2 288,204 + +0.1 288,204 + +3.2 288,204 + -1.0 288,204 + -0.8 288,204 + +0.8 288,204 + -2.1 288,204 + -0.6 288,204 + +0.4 288,204 + -1.1 288,204 + -0.4 288,204 + -0.7 288,204 + +0.4 288,205 - +0.2 288,205 - +2.2 288,205 - +1.0 288,205 - +0.3 288,205 - +0.6 288,205 - -1.4 288,205 - +0.8 288,205 - -0.6 288,205 - -1.3 288,205 - +0.4 288,205 - +2.2 288,205 - -0.6 288,205 - -1.0 288,205 - -0.1 288,242 + AO353_01330 0.13 -1.3 288,242 + AO353_01330 0.13 +0.2 288,334 - AO353_01330 0.39 -0.8 288,400 + AO353_01330 0.57 -0.8 288,400 + AO353_01330 0.57 +0.6 288,401 - AO353_01330 0.57 +1.3 288,419 + AO353_01330 0.62 +0.4 288,419 + AO353_01330 0.62 -0.2 288,419 + AO353_01330 0.62 -1.8 288,419 + AO353_01330 0.62 +0.3 288,419 + AO353_01330 0.62 -0.4 288,420 - AO353_01330 0.63 +0.2 288,420 - AO353_01330 0.63 +0.3 288,470 + AO353_01330 0.77 +1.0 288,470 + AO353_01330 0.77 +0.3 288,470 + AO353_01330 0.77 +0.1 288,470 + AO353_01330 0.77 +1.9 288,470 + AO353_01330 0.77 +0.6 288,471 - AO353_01330 0.77 -1.7 288,471 - AO353_01330 0.77 +0.4 288,471 - AO353_01330 0.77 +1.8 288,471 - AO353_01330 0.77 -0.2 288,471 - +0.6 288,471 - AO353_01330 0.77 +0.4 288,471 - AO353_01330 0.77 -0.3 288,471 - AO353_01330 0.77 +0.5 288,479 + AO353_01330 0.79 +1.0 288,582 + -0.2 288,582 + -0.7 290,504 - AO353_01345 0.23 -0.6 290,504 - AO353_01345 0.23 +1.7 290,504 - AO353_01345 0.23 -1.0 290,504 - AO353_01345 0.23 +1.4 290,506 - AO353_01345 0.24 +1.4 290,506 - AO353_01345 0.24 +1.6 290,506 - AO353_01345 0.24 +1.9
Or see this region's nucleotide sequence