Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00995 and AO353_01000 are separated by 66 nucleotides AO353_01000 and AO353_01005 are separated by 150 nucleotides AO353_01005 and AO353_01010 are separated by 309 nucleotides AO353_01010 and AO353_01015 are separated by 52 nucleotides AO353_01015 and AO353_01020 overlap by 2 nucleotides
AO353_00995: AO353_00995 - LysR family transcriptional regulator, at 222,079 to 222,984
_00995
AO353_01000: AO353_01000 - hypothetical protein, at 223,051 to 223,629
_01000
AO353_01005: AO353_01005 - hypothetical protein, at 223,780 to 224,115
_01005
AO353_01010: AO353_01010 - cell envelope protein SmpA, at 224,425 to 224,787
_01010
AO353_01015: AO353_01015 - hypothetical protein, at 224,840 to 225,019
_01015
AO353_01020: AO353_01020 - hypothetical protein, at 225,018 to 225,404
_01020
Position (kb) 223
224
225 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 222.904 kb on - strand at 222.955 kb on + strand at 222.955 kb on + strand at 222.955 kb on + strand at 222.955 kb on + strand at 222.955 kb on + strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.956 kb on - strand at 222.988 kb on - strand at 222.988 kb on - strand at 223.026 kb on + strand at 223.026 kb on + strand at 223.026 kb on + strand at 223.027 kb on - strand at 223.027 kb on - strand at 223.148 kb on + strand, within AO353_01000 at 223.195 kb on + strand, within AO353_01000 at 223.282 kb on + strand, within AO353_01000 at 223.282 kb on + strand, within AO353_01000 at 223.282 kb on + strand, within AO353_01000 at 223.282 kb on + strand, within AO353_01000 at 223.282 kb on + strand, within AO353_01000 at 223.282 kb on + strand, within AO353_01000 at 223.282 kb on + strand, within AO353_01000 at 223.283 kb on - strand at 223.285 kb on + strand, within AO353_01000 at 223.285 kb on + strand, within AO353_01000 at 223.285 kb on + strand, within AO353_01000 at 223.357 kb on + strand, within AO353_01000 at 223.357 kb on + strand, within AO353_01000 at 223.357 kb on + strand, within AO353_01000 at 223.358 kb on - strand, within AO353_01000 at 223.358 kb on - strand, within AO353_01000 at 223.378 kb on + strand, within AO353_01000 at 223.379 kb on - strand, within AO353_01000 at 223.549 kb on - strand, within AO353_01000 at 223.549 kb on - strand, within AO353_01000 at 223.549 kb on - strand, within AO353_01000 at 223.573 kb on + strand at 223.573 kb on + strand at 223.574 kb on - strand at 223.590 kb on + strand at 223.625 kb on + strand at 223.625 kb on + strand at 223.625 kb on + strand at 223.625 kb on + strand at 223.625 kb on + strand at 223.626 kb on - strand at 223.626 kb on - strand at 223.626 kb on - strand at 223.626 kb on - strand at 223.626 kb on - strand at 223.634 kb on - strand at 223.697 kb on + strand at 223.697 kb on + strand at 223.781 kb on + strand at 223.781 kb on + strand at 223.781 kb on + strand at 223.781 kb on + strand at 223.781 kb on + strand at 223.782 kb on - strand at 223.782 kb on - strand at 223.782 kb on - strand at 223.841 kb on + strand, within AO353_01005 at 223.841 kb on + strand, within AO353_01005 at 223.841 kb on + strand, within AO353_01005 at 223.841 kb on + strand, within AO353_01005 at 223.841 kb on + strand, within AO353_01005 at 223.841 kb on + strand, within AO353_01005 at 223.849 kb on + strand, within AO353_01005 at 223.868 kb on + strand, within AO353_01005 at 223.869 kb on - strand, within AO353_01005 at 223.869 kb on - strand, within AO353_01005 at 223.869 kb on - strand, within AO353_01005 at 223.917 kb on + strand, within AO353_01005 at 223.917 kb on + strand, within AO353_01005 at 223.917 kb on + strand, within AO353_01005 at 223.917 kb on + strand, within AO353_01005 at 223.941 kb on + strand, within AO353_01005 at 223.941 kb on + strand, within AO353_01005 at 223.941 kb on + strand, within AO353_01005 at 223.942 kb on - strand, within AO353_01005 at 223.942 kb on - strand, within AO353_01005 at 223.942 kb on - strand, within AO353_01005 at 223.956 kb on + strand, within AO353_01005 at 223.957 kb on - strand, within AO353_01005 at 223.957 kb on - strand, within AO353_01005 at 223.957 kb on - strand, within AO353_01005 at 223.957 kb on - strand, within AO353_01005 at 223.957 kb on - strand, within AO353_01005 at 223.997 kb on + strand, within AO353_01005 at 223.997 kb on + strand, within AO353_01005 at 223.997 kb on + strand, within AO353_01005 at 223.998 kb on - strand, within AO353_01005 at 223.998 kb on - strand, within AO353_01005 at 223.998 kb on - strand, within AO353_01005 at 224.101 kb on + strand at 224.101 kb on + strand at 224.101 kb on + strand at 224.102 kb on - strand at 224.102 kb on - strand at 224.115 kb on + strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.116 kb on - strand at 224.131 kb on + strand at 224.131 kb on + strand at 224.147 kb on + strand at 224.147 kb on + strand at 224.148 kb on - strand at 224.148 kb on - strand at 224.148 kb on - strand at 224.148 kb on - strand at 224.162 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.175 kb on + strand at 224.176 kb on - strand at 224.176 kb on - strand at 224.179 kb on + strand at 224.179 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.200 kb on + strand at 224.201 kb on - strand at 224.201 kb on - strand at 224.216 kb on - strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.339 kb on - strand at 224.373 kb on + strand at 224.373 kb on + strand at 224.374 kb on - strand at 224.439 kb on - strand at 224.525 kb on + strand, within AO353_01010 at 224.526 kb on - strand, within AO353_01010 at 224.526 kb on - strand, within AO353_01010 at 224.576 kb on + strand, within AO353_01010 at 224.576 kb on + strand, within AO353_01010 at 224.620 kb on + strand, within AO353_01010 at 224.620 kb on + strand, within AO353_01010 at 224.620 kb on + strand, within AO353_01010 at 224.620 kb on + strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.621 kb on - strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.691 kb on + strand, within AO353_01010 at 224.700 kb on + strand, within AO353_01010 at 224.700 kb on + strand, within AO353_01010 at 224.701 kb on - strand, within AO353_01010 at 224.701 kb on - strand, within AO353_01010 at 224.701 kb on - strand, within AO353_01010 at 224.785 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.790 kb on + strand at 224.791 kb on - strand at 224.791 kb on - strand at 224.791 kb on - strand at 224.791 kb on - strand at 224.791 kb on - strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.818 kb on + strand at 224.819 kb on - strand at 224.819 kb on - strand at 224.819 kb on - strand at 224.819 kb on - strand at 224.819 kb on - strand at 224.848 kb on - strand at 224.848 kb on - strand at 224.848 kb on - strand at 224.848 kb on - strand at 224.893 kb on + strand, within AO353_01015 at 224.894 kb on - strand, within AO353_01015 at 224.981 kb on + strand, within AO353_01015 at 224.982 kb on - strand, within AO353_01015 at 225.023 kb on + strand at 225.024 kb on - strand at 225.029 kb on - strand at 225.037 kb on + strand at 225.038 kb on - strand at 225.069 kb on + strand, within AO353_01020 at 225.069 kb on + strand, within AO353_01020 at 225.069 kb on + strand, within AO353_01020
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 222,904 - -1.7 222,955 + -1.7 222,955 + +1.3 222,955 + -0.1 222,955 + -1.0 222,955 + +1.5 222,956 - +0.6 222,956 - +0.6 222,956 - -0.6 222,956 - -1.4 222,988 - -1.5 222,988 - -0.8 223,026 + +1.5 223,026 + +0.6 223,026 + +0.3 223,027 - -2.0 223,027 - -1.3 223,148 + AO353_01000 0.17 +0.4 223,195 + AO353_01000 0.25 -0.5 223,282 + AO353_01000 0.40 +0.5 223,282 + AO353_01000 0.40 +0.2 223,282 + AO353_01000 0.40 +1.5 223,282 + AO353_01000 0.40 +0.6 223,282 + AO353_01000 0.40 -1.4 223,282 + AO353_01000 0.40 -1.1 223,282 + AO353_01000 0.40 +0.1 223,283 - +1.2 223,285 + AO353_01000 0.40 -1.1 223,285 + AO353_01000 0.40 +1.0 223,285 + AO353_01000 0.40 -0.1 223,357 + AO353_01000 0.53 +1.2 223,357 + AO353_01000 0.53 -1.4 223,357 + AO353_01000 0.53 +1.8 223,358 - AO353_01000 0.53 -0.8 223,358 - AO353_01000 0.53 -1.1 223,378 + AO353_01000 0.56 -0.4 223,379 - AO353_01000 0.57 -0.1 223,549 - AO353_01000 0.86 +0.2 223,549 - AO353_01000 0.86 +1.0 223,549 - AO353_01000 0.86 -0.6 223,573 + -0.9 223,573 + -2.0 223,574 - -1.0 223,590 + +1.2 223,625 + +0.0 223,625 + -0.1 223,625 + -0.3 223,625 + +2.2 223,625 + +1.0 223,626 - +0.9 223,626 - +0.8 223,626 - +0.3 223,626 - -1.0 223,626 - -1.0 223,634 - +0.8 223,697 + -0.5 223,697 + +0.2 223,781 + -0.7 223,781 + +1.9 223,781 + -0.4 223,781 + +0.2 223,781 + -2.1 223,782 - -0.8 223,782 - -1.9 223,782 - +2.1 223,841 + AO353_01005 0.18 -1.4 223,841 + AO353_01005 0.18 +0.4 223,841 + AO353_01005 0.18 +0.6 223,841 + AO353_01005 0.18 -2.3 223,841 + AO353_01005 0.18 -0.3 223,841 + AO353_01005 0.18 +0.2 223,849 + AO353_01005 0.21 +0.4 223,868 + AO353_01005 0.26 -0.8 223,869 - AO353_01005 0.26 +0.1 223,869 - AO353_01005 0.26 -0.8 223,869 - AO353_01005 0.26 -1.3 223,917 + AO353_01005 0.41 +1.2 223,917 + AO353_01005 0.41 -0.1 223,917 + AO353_01005 0.41 +0.1 223,917 + AO353_01005 0.41 -1.6 223,941 + AO353_01005 0.48 -2.1 223,941 + AO353_01005 0.48 +0.6 223,941 + AO353_01005 0.48 -1.4 223,942 - AO353_01005 0.48 -1.2 223,942 - AO353_01005 0.48 -0.6 223,942 - AO353_01005 0.48 +0.8 223,956 + AO353_01005 0.52 -0.6 223,957 - AO353_01005 0.53 -0.8 223,957 - AO353_01005 0.53 -1.5 223,957 - AO353_01005 0.53 -1.1 223,957 - AO353_01005 0.53 -0.4 223,957 - AO353_01005 0.53 +0.4 223,997 + AO353_01005 0.65 -1.1 223,997 + AO353_01005 0.65 -1.8 223,997 + AO353_01005 0.65 -1.2 223,998 - AO353_01005 0.65 -0.4 223,998 - AO353_01005 0.65 -1.3 223,998 - AO353_01005 0.65 -0.4 224,101 + -0.0 224,101 + -2.4 224,101 + -0.8 224,102 - -0.7 224,102 - -0.1 224,115 + +2.8 224,116 - -1.7 224,116 - -1.7 224,116 - -1.1 224,116 - -1.3 224,116 - +0.8 224,116 - -0.8 224,116 - -0.8 224,116 - -0.5 224,131 + +0.3 224,131 + -0.3 224,147 + -1.0 224,147 + -1.7 224,148 - +1.2 224,148 - -1.0 224,148 - -0.6 224,148 - +0.1 224,162 + +0.5 224,175 + -0.5 224,175 + -0.1 224,175 + -0.4 224,175 + +0.1 224,175 + +0.1 224,175 + -0.4 224,176 - +0.0 224,176 - +0.6 224,179 + -0.8 224,179 + +0.5 224,189 + -1.0 224,189 + +1.6 224,189 + -0.6 224,189 + +1.0 224,189 + -1.4 224,189 + +1.7 224,189 + -1.9 224,190 - -0.4 224,190 - -1.8 224,190 - +0.6 224,190 - +0.4 224,190 - -1.8 224,200 + -0.6 224,201 - +0.4 224,201 - +1.5 224,216 - -0.8 224,339 - -0.4 224,339 - +1.1 224,339 - -0.6 224,339 - +3.0 224,373 + -1.0 224,373 + -0.6 224,374 - -1.6 224,439 - +0.6 224,525 + AO353_01010 0.28 -0.8 224,526 - AO353_01010 0.28 +1.4 224,526 - AO353_01010 0.28 +1.0 224,576 + AO353_01010 0.42 +0.0 224,576 + AO353_01010 0.42 -0.2 224,620 + AO353_01010 0.54 +0.5 224,620 + AO353_01010 0.54 +0.3 224,620 + AO353_01010 0.54 -0.6 224,620 + AO353_01010 0.54 +0.4 224,621 - AO353_01010 0.54 +1.0 224,621 - AO353_01010 0.54 -2.6 224,621 - AO353_01010 0.54 -1.1 224,621 - AO353_01010 0.54 +0.9 224,621 - AO353_01010 0.54 -0.8 224,621 - AO353_01010 0.54 +0.2 224,621 - AO353_01010 0.54 -1.7 224,691 + AO353_01010 0.73 -0.7 224,691 + AO353_01010 0.73 +1.6 224,691 + AO353_01010 0.73 -1.7 224,691 + AO353_01010 0.73 -0.0 224,691 + AO353_01010 0.73 +1.4 224,700 + AO353_01010 0.76 +0.0 224,700 + AO353_01010 0.76 +1.0 224,701 - AO353_01010 0.76 +1.9 224,701 - AO353_01010 0.76 +1.3 224,701 - AO353_01010 0.76 -0.4 224,785 + -2.0 224,790 + -1.3 224,790 + -1.1 224,790 + -1.8 224,790 + +3.2 224,790 + -1.8 224,790 + +1.3 224,791 - +0.2 224,791 - +0.4 224,791 - +1.2 224,791 - -0.8 224,791 - +0.6 224,818 + +0.1 224,818 + -1.1 224,818 + -0.6 224,818 + +0.8 224,818 + -0.2 224,818 + -1.8 224,818 + +1.2 224,818 + +0.2 224,818 + -1.5 224,818 + +0.5 224,818 + -1.0 224,818 + -1.0 224,818 + -0.4 224,818 + -0.1 224,819 - -0.1 224,819 - -0.9 224,819 - -0.0 224,819 - -1.5 224,819 - +0.6 224,848 - +0.7 224,848 - +0.9 224,848 - +1.6 224,848 - +2.2 224,893 + AO353_01015 0.29 -2.3 224,894 - AO353_01015 0.30 -0.7 224,981 + AO353_01015 0.78 +0.7 224,982 - AO353_01015 0.79 +1.6 225,023 + -1.1 225,024 - -1.1 225,029 - +0.9 225,037 + +0.1 225,038 - -0.8 225,069 + AO353_01020 0.13 -1.2 225,069 + AO353_01020 0.13 +0.9 225,069 + AO353_01020 0.13 -1.5
Or see this region's nucleotide sequence