Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00700 and AO353_00705 are separated by 136 nucleotides AO353_00705 and AO353_00710 are separated by 416 nucleotides AO353_00710 and AO353_00715 are separated by 211 nucleotides
AO353_00700: AO353_00700 - Cro/Cl family transcriptional regulator, at 149,533 to 149,847
_00700
AO353_00705: AO353_00705 - drug:proton antiporter, at 149,984 to 150,352
_00705
AO353_00710: AO353_00710 - aromatic ring-opening dioxygenase LigA, at 150,769 to 153,126
_00710
AO353_00715: AO353_00715 - cell division protein ZipA, at 153,338 to 154,186
_00715
Position (kb) 150
151
152
153
154 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 149.777 kb on + strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.778 kb on - strand, within AO353_00700 at 149.877 kb on + strand at 149.877 kb on + strand at 149.877 kb on + strand at 149.888 kb on + strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.889 kb on - strand at 149.916 kb on + strand at 149.916 kb on + strand at 149.916 kb on + strand at 149.946 kb on - strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 149.999 kb on + strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.000 kb on - strand at 150.011 kb on + strand at 150.011 kb on + strand at 150.012 kb on - strand at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.044 kb on + strand, within AO353_00705 at 150.045 kb on - strand, within AO353_00705 at 150.045 kb on - strand, within AO353_00705 at 150.079 kb on - strand, within AO353_00705 at 150.079 kb on - strand, within AO353_00705 at 150.117 kb on + strand, within AO353_00705 at 150.117 kb on + strand, within AO353_00705 at 150.118 kb on - strand, within AO353_00705 at 150.118 kb on - strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.227 kb on + strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.228 kb on - strand, within AO353_00705 at 150.651 kb on - strand at 150.658 kb on - strand at 150.704 kb on + strand at 150.716 kb on + strand at 150.716 kb on + strand at 150.717 kb on - strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.724 kb on + strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 150.725 kb on - strand at 153.140 kb on + strand at 153.180 kb on - strand at 153.190 kb on - strand at 153.310 kb on + strand at 153.310 kb on + strand at 153.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 149,777 + AO353_00700 0.77 -1.1 149,778 - AO353_00700 0.78 -0.7 149,778 - AO353_00700 0.78 -0.5 149,778 - AO353_00700 0.78 -1.0 149,877 + -0.4 149,877 + -0.8 149,877 + -1.5 149,888 + +0.2 149,889 - -1.1 149,889 - +2.2 149,889 - -0.1 149,889 - +0.9 149,889 - -0.1 149,916 + -0.1 149,916 + +1.2 149,916 + -0.8 149,946 - -2.1 149,999 + -0.2 149,999 + -2.3 149,999 + -1.5 149,999 + +0.6 149,999 + +0.9 149,999 + +1.3 150,000 - -0.4 150,000 - -0.5 150,000 - +0.9 150,000 - -0.8 150,011 + +0.2 150,011 + -1.3 150,012 - -0.2 150,044 + AO353_00705 0.16 +0.4 150,044 + AO353_00705 0.16 +0.4 150,044 + AO353_00705 0.16 +0.2 150,044 + AO353_00705 0.16 -1.4 150,044 + AO353_00705 0.16 -1.1 150,044 + AO353_00705 0.16 -0.8 150,044 + AO353_00705 0.16 +0.0 150,044 + AO353_00705 0.16 -0.1 150,045 - AO353_00705 0.17 +0.0 150,045 - AO353_00705 0.17 -0.1 150,079 - AO353_00705 0.26 +2.2 150,079 - AO353_00705 0.26 -1.7 150,117 + AO353_00705 0.36 -2.0 150,117 + AO353_00705 0.36 +0.8 150,118 - AO353_00705 0.36 +1.6 150,118 - AO353_00705 0.36 -3.1 150,227 + AO353_00705 0.66 +1.2 150,227 + AO353_00705 0.66 +0.3 150,227 + AO353_00705 0.66 -0.8 150,227 + AO353_00705 0.66 +0.2 150,227 + AO353_00705 0.66 +0.9 150,227 + AO353_00705 0.66 -0.6 150,228 - AO353_00705 0.66 -0.6 150,228 - AO353_00705 0.66 -1.4 150,228 - AO353_00705 0.66 -0.8 150,228 - AO353_00705 0.66 -2.2 150,228 - AO353_00705 0.66 -2.5 150,651 - +0.9 150,658 - +0.4 150,704 + +1.4 150,716 + -1.4 150,716 + +0.7 150,717 - -0.9 150,724 + +0.2 150,724 + -0.2 150,724 + +0.9 150,724 + -1.8 150,724 + +1.2 150,724 + -0.4 150,724 + -0.7 150,724 + -0.1 150,724 + +0.4 150,724 + -0.6 150,724 + -1.3 150,724 + +1.1 150,724 + +1.9 150,724 + -0.1 150,724 + -0.4 150,724 + -1.3 150,725 - -1.5 150,725 - -0.4 150,725 - -1.0 150,725 - -1.1 150,725 - -0.1 150,725 - +1.4 150,725 - -0.1 150,725 - +0.5 150,725 - -1.1 150,725 - -0.6 150,725 - +0.6 150,725 - -0.9 150,725 - -1.1 150,725 - -1.7 150,725 - +0.5 150,725 - -1.1 150,725 - +1.4 150,725 - -2.6 150,725 - +1.9 150,725 - +0.9 150,725 - -1.7 150,725 - -0.4 150,725 - +0.9 150,725 - -0.4 150,725 - -2.3 150,725 - +0.6 153,140 + -0.1 153,180 - +1.5 153,190 - +1.5 153,310 + -1.1 153,310 + -1.9 153,311 - +0.1
Or see this region's nucleotide sequence