Experiment: Lomefloxacin 0.001 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00675 and AO353_00680 are separated by 322 nucleotides AO353_00680 and AO353_00685 are separated by 67 nucleotides AO353_00685 and AO353_00690 are separated by 146 nucleotides AO353_00690 and AO353_00695 are separated by 3 nucleotides
AO353_00675: AO353_00675 - recombination protein RecR, at 142,994 to 143,596
_00675
AO353_00680: AO353_00680 - nucleoid-associated protein, at 143,919 to 144,257
_00680
AO353_00685: AO353_00685 - DNA polymerase III subunit gamma/tau, at 144,325 to 146,433
_00685
AO353_00690: AO353_00690 - amino acid ABC transporter substrate-binding protein, at 146,580 to 147,338
_00690
AO353_00695: AO353_00695 - diguanylate cyclase, at 147,342 to 149,042
_00695
Position (kb) 144
145
146
147 Strain fitness (log2 ratio) -2
-1
0
1
2 at 143.354 kb on + strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.354 kb on + strand, within AO353_00675 at 143.355 kb on - strand, within AO353_00675 at 143.355 kb on - strand, within AO353_00675 at 143.355 kb on - strand, within AO353_00675 at 143.355 kb on - strand, within AO353_00675 at 143.515 kb on + strand, within AO353_00675 at 143.516 kb on - strand, within AO353_00675 at 143.614 kb on + strand at 143.614 kb on + strand at 143.614 kb on + strand at 143.614 kb on + strand at 143.615 kb on - strand at 143.615 kb on - strand at 143.615 kb on - strand at 143.632 kb on + strand at 143.633 kb on - strand at 143.633 kb on - strand at 143.634 kb on + strand at 143.634 kb on + strand at 143.748 kb on + strand at 143.748 kb on + strand at 143.749 kb on - strand at 143.780 kb on - strand at 143.896 kb on - strand at 144.141 kb on - strand, within AO353_00680 at 144.276 kb on - strand at 144.276 kb on - strand at 144.276 kb on - strand at 144.276 kb on - strand at 144.324 kb on - strand at 144.324 kb on - strand at 144.324 kb on - strand at 144.324 kb on - strand at 144.326 kb on + strand at 146.512 kb on + strand at 146.521 kb on + strand at 146.529 kb on + strand at 146.530 kb on - strand at 146.579 kb on + strand at 146.721 kb on + strand, within AO353_00690 at 146.721 kb on + strand, within AO353_00690 at 146.721 kb on + strand, within AO353_00690 at 146.836 kb on - strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.874 kb on + strand, within AO353_00690 at 146.875 kb on - strand, within AO353_00690 at 146.875 kb on - strand, within AO353_00690 at 146.984 kb on - strand, within AO353_00690 at 147.092 kb on + strand, within AO353_00690 at 147.100 kb on - strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.204 kb on + strand, within AO353_00690 at 147.205 kb on - strand, within AO353_00690 at 147.205 kb on - strand, within AO353_00690 at 147.212 kb on + strand, within AO353_00690 at 147.301 kb on - strand at 147.301 kb on - strand at 147.337 kb on - strand at 147.337 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.001 mM remove 143,354 + AO353_00675 0.60 -2.6 143,354 + AO353_00675 0.60 -0.1 143,354 + AO353_00675 0.60 -0.1 143,354 + AO353_00675 0.60 -1.5 143,354 + AO353_00675 0.60 -1.5 143,355 - AO353_00675 0.60 -0.4 143,355 - AO353_00675 0.60 +0.1 143,355 - AO353_00675 0.60 +0.0 143,355 - AO353_00675 0.60 -0.3 143,515 + AO353_00675 0.86 -2.2 143,516 - AO353_00675 0.87 -0.9 143,614 + -2.1 143,614 + -1.7 143,614 + -0.1 143,614 + +0.6 143,615 - +0.6 143,615 - -0.8 143,615 - -1.4 143,632 + +0.9 143,633 - +0.9 143,633 - -1.6 143,634 + -2.0 143,634 + +0.8 143,748 + +0.5 143,748 + +0.4 143,749 - +0.9 143,780 - +0.1 143,896 - +0.8 144,141 - AO353_00680 0.65 +0.2 144,276 - +1.8 144,276 - +0.7 144,276 - -1.5 144,276 - +1.0 144,324 - -0.6 144,324 - -0.4 144,324 - +0.4 144,324 - -0.5 144,326 + +1.2 146,512 + +1.0 146,521 + -1.6 146,529 + -2.5 146,530 - -0.1 146,579 + -2.0 146,721 + AO353_00690 0.19 -1.6 146,721 + AO353_00690 0.19 +0.4 146,721 + AO353_00690 0.19 -1.6 146,836 - AO353_00690 0.34 -1.5 146,874 + AO353_00690 0.39 +0.2 146,874 + AO353_00690 0.39 +0.9 146,874 + AO353_00690 0.39 -0.4 146,875 - AO353_00690 0.39 -0.5 146,875 - AO353_00690 0.39 +1.2 146,984 - AO353_00690 0.53 +2.6 147,092 + AO353_00690 0.67 +1.2 147,100 - AO353_00690 0.69 -2.5 147,204 + AO353_00690 0.82 -0.3 147,204 + AO353_00690 0.82 +1.0 147,204 + AO353_00690 0.82 -0.7 147,204 + AO353_00690 0.82 +1.1 147,205 - AO353_00690 0.82 -0.8 147,205 - AO353_00690 0.82 -0.1 147,212 + AO353_00690 0.83 -0.5 147,301 - +0.2 147,301 - +0.6 147,337 - +0.3 147,337 - -0.8
Or see this region's nucleotide sequence