Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS19670 and ABZR86_RS19675 are separated by 140 nucleotides ABZR86_RS19675 and ABZR86_RS19680 are separated by 81 nucleotides ABZR86_RS19680 and ABZR86_RS19685 are separated by 306 nucleotides
ABZR86_RS19670: ABZR86_RS19670 - M13 family metallopeptidase, at 414,758 to 416,812
_RS19670
ABZR86_RS19675: ABZR86_RS19675 - TetR/AcrR family transcriptional regulator, at 416,953 to 417,555
_RS19675
ABZR86_RS19680: ABZR86_RS19680 - NADP-dependent oxidoreductase, at 417,637 to 418,668
_RS19680
ABZR86_RS19685: ABZR86_RS19685 - serine hydrolase domain-containing protein, at 418,975 to 420,330
_RS19685
Position (kb) 417
418
419 Strain fitness (log2 ratio) -1
0
1 at 416.858 kb on + strand at 416.859 kb on - strand at 417.091 kb on + strand, within ABZR86_RS19675 at 417.091 kb on + strand, within ABZR86_RS19675 at 417.091 kb on + strand, within ABZR86_RS19675 at 417.092 kb on - strand, within ABZR86_RS19675 at 417.092 kb on - strand, within ABZR86_RS19675 at 417.092 kb on - strand, within ABZR86_RS19675 at 417.097 kb on + strand, within ABZR86_RS19675 at 417.097 kb on + strand, within ABZR86_RS19675 at 417.098 kb on - strand, within ABZR86_RS19675 at 417.098 kb on - strand, within ABZR86_RS19675 at 417.142 kb on + strand, within ABZR86_RS19675 at 417.142 kb on + strand, within ABZR86_RS19675 at 417.142 kb on + strand, within ABZR86_RS19675 at 417.142 kb on + strand, within ABZR86_RS19675 at 417.143 kb on - strand, within ABZR86_RS19675 at 417.143 kb on - strand, within ABZR86_RS19675 at 417.154 kb on + strand, within ABZR86_RS19675 at 417.155 kb on - strand, within ABZR86_RS19675 at 417.155 kb on - strand, within ABZR86_RS19675 at 417.166 kb on - strand, within ABZR86_RS19675 at 417.442 kb on + strand, within ABZR86_RS19675 at 417.479 kb on + strand, within ABZR86_RS19675 at 417.595 kb on - strand at 417.775 kb on + strand, within ABZR86_RS19680 at 417.775 kb on + strand, within ABZR86_RS19680 at 417.775 kb on + strand, within ABZR86_RS19680 at 417.775 kb on + strand, within ABZR86_RS19680 at 417.775 kb on + strand, within ABZR86_RS19680 at 417.775 kb on + strand, within ABZR86_RS19680 at 417.775 kb on + strand, within ABZR86_RS19680 at 417.776 kb on - strand, within ABZR86_RS19680 at 417.793 kb on + strand, within ABZR86_RS19680 at 417.793 kb on + strand, within ABZR86_RS19680 at 417.793 kb on + strand, within ABZR86_RS19680 at 417.794 kb on - strand, within ABZR86_RS19680 at 417.815 kb on + strand, within ABZR86_RS19680 at 417.830 kb on - strand, within ABZR86_RS19680 at 417.830 kb on - strand, within ABZR86_RS19680 at 417.830 kb on - strand, within ABZR86_RS19680 at 417.952 kb on + strand, within ABZR86_RS19680 at 417.952 kb on + strand, within ABZR86_RS19680 at 417.953 kb on - strand, within ABZR86_RS19680 at 418.051 kb on + strand, within ABZR86_RS19680 at 418.052 kb on - strand, within ABZR86_RS19680 at 418.201 kb on + strand, within ABZR86_RS19680 at 418.300 kb on + strand, within ABZR86_RS19680 at 418.393 kb on + strand, within ABZR86_RS19680 at 418.446 kb on + strand, within ABZR86_RS19680 at 418.446 kb on + strand, within ABZR86_RS19680 at 418.446 kb on + strand, within ABZR86_RS19680 at 418.446 kb on + strand, within ABZR86_RS19680 at 418.498 kb on + strand, within ABZR86_RS19680 at 418.499 kb on - strand, within ABZR86_RS19680 at 418.499 kb on - strand, within ABZR86_RS19680 at 418.909 kb on + strand at 419.072 kb on + strand at 419.072 kb on + strand at 419.073 kb on - strand at 419.073 kb on - strand at 419.093 kb on + strand at 419.093 kb on + strand at 419.096 kb on + strand at 419.096 kb on + strand at 419.096 kb on + strand at 419.097 kb on - strand at 419.097 kb on - strand at 419.097 kb on - strand at 419.101 kb on + strand at 419.101 kb on + strand at 419.101 kb on + strand at 419.102 kb on - strand at 419.184 kb on + strand, within ABZR86_RS19685 at 419.210 kb on + strand, within ABZR86_RS19685 at 419.211 kb on - strand, within ABZR86_RS19685 at 419.271 kb on - strand, within ABZR86_RS19685 at 419.381 kb on + strand, within ABZR86_RS19685 at 419.382 kb on - strand, within ABZR86_RS19685 at 419.387 kb on + strand, within ABZR86_RS19685 at 419.387 kb on + strand, within ABZR86_RS19685 at 419.387 kb on + strand, within ABZR86_RS19685 at 419.388 kb on - strand, within ABZR86_RS19685 at 419.465 kb on + strand, within ABZR86_RS19685
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 416,858 + -0.0 416,859 - -0.3 417,091 + ABZR86_RS19675 0.23 -0.1 417,091 + ABZR86_RS19675 0.23 -1.1 417,091 + ABZR86_RS19675 0.23 -0.4 417,092 - ABZR86_RS19675 0.23 -0.5 417,092 - ABZR86_RS19675 0.23 +0.6 417,092 - ABZR86_RS19675 0.23 +0.6 417,097 + ABZR86_RS19675 0.24 -0.0 417,097 + ABZR86_RS19675 0.24 +0.1 417,098 - ABZR86_RS19675 0.24 +0.0 417,098 - ABZR86_RS19675 0.24 -0.0 417,142 + ABZR86_RS19675 0.31 +0.1 417,142 + ABZR86_RS19675 0.31 -0.3 417,142 + ABZR86_RS19675 0.31 +0.2 417,142 + ABZR86_RS19675 0.31 -1.4 417,143 - ABZR86_RS19675 0.32 -0.2 417,143 - ABZR86_RS19675 0.32 +0.4 417,154 + ABZR86_RS19675 0.33 -0.2 417,155 - ABZR86_RS19675 0.33 -0.0 417,155 - ABZR86_RS19675 0.33 +0.2 417,166 - ABZR86_RS19675 0.35 +0.3 417,442 + ABZR86_RS19675 0.81 -0.3 417,479 + ABZR86_RS19675 0.87 +0.4 417,595 - -0.5 417,775 + ABZR86_RS19680 0.13 +0.7 417,775 + ABZR86_RS19680 0.13 +0.4 417,775 + ABZR86_RS19680 0.13 -0.3 417,775 + ABZR86_RS19680 0.13 +0.7 417,775 + ABZR86_RS19680 0.13 -1.3 417,775 + ABZR86_RS19680 0.13 +0.7 417,775 + ABZR86_RS19680 0.13 +0.1 417,776 - ABZR86_RS19680 0.13 -0.0 417,793 + ABZR86_RS19680 0.15 -0.5 417,793 + ABZR86_RS19680 0.15 +0.5 417,793 + ABZR86_RS19680 0.15 -0.8 417,794 - ABZR86_RS19680 0.15 +0.7 417,815 + ABZR86_RS19680 0.17 +0.2 417,830 - ABZR86_RS19680 0.19 -0.3 417,830 - ABZR86_RS19680 0.19 +1.0 417,830 - ABZR86_RS19680 0.19 -0.1 417,952 + ABZR86_RS19680 0.31 +0.2 417,952 + ABZR86_RS19680 0.31 +1.2 417,953 - ABZR86_RS19680 0.31 -0.1 418,051 + ABZR86_RS19680 0.40 +0.2 418,052 - ABZR86_RS19680 0.40 +0.5 418,201 + ABZR86_RS19680 0.55 -0.0 418,300 + ABZR86_RS19680 0.64 -1.4 418,393 + ABZR86_RS19680 0.73 -0.4 418,446 + ABZR86_RS19680 0.78 +0.3 418,446 + ABZR86_RS19680 0.78 -0.2 418,446 + ABZR86_RS19680 0.78 +1.0 418,446 + ABZR86_RS19680 0.78 +0.3 418,498 + ABZR86_RS19680 0.83 +1.3 418,499 - ABZR86_RS19680 0.84 -0.1 418,499 - ABZR86_RS19680 0.84 +1.4 418,909 + +0.6 419,072 + -0.9 419,072 + -0.2 419,073 - +0.8 419,073 - +0.0 419,093 + +0.2 419,093 + -0.3 419,096 + +0.0 419,096 + +0.6 419,096 + -0.2 419,097 - +0.1 419,097 - -0.4 419,097 - -1.3 419,101 + -0.3 419,101 + +0.3 419,101 + -0.1 419,102 - +0.1 419,184 + ABZR86_RS19685 0.15 -0.5 419,210 + ABZR86_RS19685 0.17 +0.3 419,211 - ABZR86_RS19685 0.17 +0.3 419,271 - ABZR86_RS19685 0.22 -0.3 419,381 + ABZR86_RS19685 0.30 -0.2 419,382 - ABZR86_RS19685 0.30 -0.4 419,387 + ABZR86_RS19685 0.30 -0.4 419,387 + ABZR86_RS19685 0.30 +0.1 419,387 + ABZR86_RS19685 0.30 -0.5 419,388 - ABZR86_RS19685 0.30 -0.5 419,465 + ABZR86_RS19685 0.36 -0.1
Or see this region's nucleotide sequence