Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS16180

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS16175 and ABZR86_RS16180 are separated by 477 nucleotidesABZR86_RS16180 and ABZR86_RS16185 overlap by 1 nucleotides ABZR86_RS16175: ABZR86_RS16175 - hypothetical protein, at 3,653,885 to 3,654,145 _RS16175 ABZR86_RS16180: ABZR86_RS16180 - Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB, at 3,654,623 to 3,655,900 _RS16180 ABZR86_RS16185: ABZR86_RS16185 - NAD-dependent epimerase, at 3,655,900 to 3,656,910 _RS16185 Position (kb) 3654 3655 3656Strain fitness (log2 ratio) -1 0 1at 3653.648 kb on + strandat 3653.794 kb on + strandat 3653.794 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.845 kb on + strandat 3653.846 kb on - strandat 3653.846 kb on - strandat 3654.233 kb on + strandat 3654.233 kb on + strandat 3654.258 kb on + strandat 3654.258 kb on + strandat 3654.258 kb on + strandat 3654.258 kb on + strandat 3654.259 kb on - strandat 3654.259 kb on - strandat 3654.259 kb on - strandat 3654.259 kb on - strandat 3654.259 kb on - strandat 3654.260 kb on + strandat 3654.260 kb on + strandat 3654.260 kb on + strandat 3654.260 kb on + strandat 3654.260 kb on + strandat 3654.260 kb on + strandat 3654.261 kb on - strandat 3654.261 kb on - strandat 3654.261 kb on - strandat 3654.261 kb on - strandat 3654.320 kb on + strandat 3654.376 kb on + strandat 3654.377 kb on - strandat 3654.377 kb on - strandat 3654.401 kb on + strandat 3654.474 kb on + strandat 3654.475 kb on - strandat 3654.475 kb on - strandat 3654.475 kb on - strandat 3654.475 kb on - strandat 3654.570 kb on + strandat 3654.570 kb on + strandat 3654.620 kb on + strandat 3654.620 kb on + strandat 3654.620 kb on + strandat 3654.620 kb on + strandat 3654.620 kb on + strandat 3654.620 kb on + strandat 3654.620 kb on + strandat 3654.621 kb on - strandat 3654.621 kb on - strandat 3654.669 kb on - strandat 3654.669 kb on - strandat 3654.974 kb on + strand, within ABZR86_RS16180at 3654.974 kb on + strand, within ABZR86_RS16180at 3654.974 kb on + strand, within ABZR86_RS16180at 3654.974 kb on + strand, within ABZR86_RS16180at 3654.974 kb on + strand, within ABZR86_RS16180at 3655.328 kb on - strand, within ABZR86_RS16180at 3655.328 kb on - strand, within ABZR86_RS16180at 3655.425 kb on - strand, within ABZR86_RS16180at 3655.758 kb on - strand, within ABZR86_RS16180at 3655.758 kb on - strand, within ABZR86_RS16180at 3655.758 kb on - strand, within ABZR86_RS16180at 3655.827 kb on - strandat 3655.827 kb on - strandat 3655.851 kb on - strandat 3655.862 kb on + strandat 3656.065 kb on - strand, within ABZR86_RS16185at 3656.065 kb on - strand, within ABZR86_RS16185at 3656.065 kb on - strand, within ABZR86_RS16185at 3656.065 kb on - strand, within ABZR86_RS16185at 3656.065 kb on - strand, within ABZR86_RS16185at 3656.065 kb on - strand, within ABZR86_RS16185at 3656.065 kb on - strand, within ABZR86_RS16185at 3656.124 kb on + strand, within ABZR86_RS16185at 3656.124 kb on + strand, within ABZR86_RS16185at 3656.354 kb on - strand, within ABZR86_RS16185at 3656.395 kb on + strand, within ABZR86_RS16185at 3656.718 kb on + strand, within ABZR86_RS16185at 3656.865 kb on + strandat 3656.866 kb on - strandat 3656.897 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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3,653,648 + -0.0
3,653,794 + -0.3
3,653,794 + -0.1
3,653,845 + +0.7
3,653,845 + +0.8
3,653,845 + +0.8
3,653,845 + -0.8
3,653,845 + -0.2
3,653,845 + +1.0
3,653,845 + -0.1
3,653,845 + +0.4
3,653,845 + +0.4
3,653,845 + +0.4
3,653,846 - -0.1
3,653,846 - -0.2
3,654,233 + -0.1
3,654,233 + -0.4
3,654,258 + +0.8
3,654,258 + +0.5
3,654,258 + +0.2
3,654,258 + -0.2
3,654,259 - +0.4
3,654,259 - -0.4
3,654,259 - +0.6
3,654,259 - -0.1
3,654,259 - +1.0
3,654,260 + -0.2
3,654,260 + +0.5
3,654,260 + +0.0
3,654,260 + -0.8
3,654,260 + +0.6
3,654,260 + -0.4
3,654,261 - +0.7
3,654,261 - -0.3
3,654,261 - +0.1
3,654,261 - +0.6
3,654,320 + -1.6
3,654,376 + -0.9
3,654,377 - +0.1
3,654,377 - +0.2
3,654,401 + +0.0
3,654,474 + -0.1
3,654,475 - -0.2
3,654,475 - -0.3
3,654,475 - +0.3
3,654,475 - +0.2
3,654,570 + -0.2
3,654,570 + -0.1
3,654,620 + +0.1
3,654,620 + +0.5
3,654,620 + -0.2
3,654,620 + -0.5
3,654,620 + -0.6
3,654,620 + +0.9
3,654,620 + -0.3
3,654,621 - -0.3
3,654,621 - -0.5
3,654,669 - +0.2
3,654,669 - +0.1
3,654,974 + ABZR86_RS16180 0.27 -0.1
3,654,974 + ABZR86_RS16180 0.27 -0.3
3,654,974 + ABZR86_RS16180 0.27 +0.5
3,654,974 + ABZR86_RS16180 0.27 -0.0
3,654,974 + ABZR86_RS16180 0.27 +0.1
3,655,328 - ABZR86_RS16180 0.55 +0.0
3,655,328 - ABZR86_RS16180 0.55 +0.2
3,655,425 - ABZR86_RS16180 0.63 +0.4
3,655,758 - ABZR86_RS16180 0.89 -0.1
3,655,758 - ABZR86_RS16180 0.89 +0.1
3,655,758 - ABZR86_RS16180 0.89 +0.3
3,655,827 - +0.7
3,655,827 - +0.3
3,655,851 - -0.6
3,655,862 + -0.5
3,656,065 - ABZR86_RS16185 0.16 +0.4
3,656,065 - ABZR86_RS16185 0.16 +0.0
3,656,065 - ABZR86_RS16185 0.16 +1.1
3,656,065 - ABZR86_RS16185 0.16 -0.3
3,656,065 - ABZR86_RS16185 0.16 +0.0
3,656,065 - ABZR86_RS16185 0.16 +0.3
3,656,065 - ABZR86_RS16185 0.16 +0.0
3,656,124 + ABZR86_RS16185 0.22 -0.2
3,656,124 + ABZR86_RS16185 0.22 +0.5
3,656,354 - ABZR86_RS16185 0.45 -0.4
3,656,395 + ABZR86_RS16185 0.49 +0.6
3,656,718 + ABZR86_RS16185 0.81 -0.2
3,656,865 + -0.8
3,656,866 - -0.1
3,656,897 - +0.3

Or see this region's nucleotide sequence