Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS11920 and ABZR86_RS11925 overlap by 4 nucleotides ABZR86_RS11925 and ABZR86_RS11930 are separated by 121 nucleotides ABZR86_RS11930 and ABZR86_RS11935 overlap by 1 nucleotides
ABZR86_RS11920: ABZR86_RS11920 - DUF1631 family protein, at 2,671,205 to 2,673,412
_RS11920
ABZR86_RS11925: ABZR86_RS11925 - PilZ domain-containing protein, at 2,673,409 to 2,673,786
_RS11925
ABZR86_RS11930: ABZR86_RS11930 - MFS transporter, at 2,673,908 to 2,675,212
_RS11930
ABZR86_RS11935: ABZR86_RS11935 - D-lactate dehydrogenase, at 2,675,212 to 2,676,924
_RS11935
Position (kb)
2673
2674
2675
2676 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2673.207 kb on - strand at 2673.207 kb on - strand at 2673.207 kb on - strand at 2673.466 kb on + strand, within ABZR86_RS11925 at 2673.467 kb on - strand, within ABZR86_RS11925 at 2673.467 kb on - strand, within ABZR86_RS11925 at 2673.580 kb on + strand, within ABZR86_RS11925 at 2673.580 kb on + strand, within ABZR86_RS11925 at 2673.581 kb on - strand, within ABZR86_RS11925 at 2673.784 kb on + strand at 2673.785 kb on - strand at 2673.790 kb on + strand at 2673.790 kb on + strand at 2673.790 kb on + strand at 2673.791 kb on - strand at 2673.791 kb on - strand at 2673.803 kb on + strand at 2673.804 kb on - strand at 2673.999 kb on - strand at 2674.010 kb on + strand at 2674.011 kb on - strand at 2674.082 kb on + strand, within ABZR86_RS11930 at 2674.083 kb on - strand, within ABZR86_RS11930 at 2674.116 kb on - strand, within ABZR86_RS11930 at 2674.247 kb on + strand, within ABZR86_RS11930 at 2674.247 kb on + strand, within ABZR86_RS11930 at 2674.248 kb on - strand, within ABZR86_RS11930 at 2674.248 kb on - strand, within ABZR86_RS11930 at 2674.248 kb on - strand, within ABZR86_RS11930 at 2674.248 kb on - strand, within ABZR86_RS11930 at 2674.248 kb on - strand, within ABZR86_RS11930 at 2674.308 kb on - strand, within ABZR86_RS11930 at 2674.316 kb on + strand, within ABZR86_RS11930 at 2674.316 kb on + strand, within ABZR86_RS11930 at 2674.316 kb on + strand, within ABZR86_RS11930 at 2674.317 kb on - strand, within ABZR86_RS11930 at 2674.317 kb on - strand, within ABZR86_RS11930 at 2674.317 kb on - strand, within ABZR86_RS11930 at 2674.323 kb on - strand, within ABZR86_RS11930 at 2674.667 kb on + strand, within ABZR86_RS11930 at 2674.667 kb on + strand, within ABZR86_RS11930 at 2674.667 kb on + strand, within ABZR86_RS11930 at 2674.668 kb on - strand, within ABZR86_RS11930 at 2674.706 kb on + strand, within ABZR86_RS11930 at 2674.778 kb on + strand, within ABZR86_RS11930 at 2674.831 kb on + strand, within ABZR86_RS11930 at 2674.887 kb on - strand, within ABZR86_RS11930 at 2675.124 kb on + strand at 2675.486 kb on - strand, within ABZR86_RS11935 at 2675.721 kb on + strand, within ABZR86_RS11935 at 2675.891 kb on - strand, within ABZR86_RS11935 at 2676.046 kb on + strand, within ABZR86_RS11935 at 2676.047 kb on - strand, within ABZR86_RS11935 at 2676.047 kb on - strand, within ABZR86_RS11935 at 2676.133 kb on + strand, within ABZR86_RS11935 at 2676.133 kb on + strand, within ABZR86_RS11935
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 2,673,207 - -0.1 2,673,207 - -0.5 2,673,207 - -0.4 2,673,466 + ABZR86_RS11925 0.15 +0.2 2,673,467 - ABZR86_RS11925 0.15 -0.5 2,673,467 - ABZR86_RS11925 0.15 +0.8 2,673,580 + ABZR86_RS11925 0.45 -0.2 2,673,580 + ABZR86_RS11925 0.45 +0.1 2,673,581 - ABZR86_RS11925 0.46 +0.5 2,673,784 + -0.8 2,673,785 - -0.1 2,673,790 + -0.3 2,673,790 + +2.1 2,673,790 + +0.3 2,673,791 - -0.1 2,673,791 - +0.7 2,673,803 + +0.1 2,673,804 - +0.5 2,673,999 - -0.1 2,674,010 + +0.1 2,674,011 - +0.0 2,674,082 + ABZR86_RS11930 0.13 +0.1 2,674,083 - ABZR86_RS11930 0.13 -1.4 2,674,116 - ABZR86_RS11930 0.16 -1.3 2,674,247 + ABZR86_RS11930 0.26 -0.2 2,674,247 + ABZR86_RS11930 0.26 -0.4 2,674,248 - ABZR86_RS11930 0.26 +0.3 2,674,248 - ABZR86_RS11930 0.26 -0.1 2,674,248 - ABZR86_RS11930 0.26 -0.1 2,674,248 - ABZR86_RS11930 0.26 -0.2 2,674,248 - ABZR86_RS11930 0.26 -0.1 2,674,308 - ABZR86_RS11930 0.31 +0.4 2,674,316 + ABZR86_RS11930 0.31 +0.1 2,674,316 + ABZR86_RS11930 0.31 +0.6 2,674,316 + ABZR86_RS11930 0.31 +0.1 2,674,317 - ABZR86_RS11930 0.31 -0.6 2,674,317 - ABZR86_RS11930 0.31 +0.1 2,674,317 - ABZR86_RS11930 0.31 +0.1 2,674,323 - ABZR86_RS11930 0.32 +0.1 2,674,667 + ABZR86_RS11930 0.58 -1.6 2,674,667 + ABZR86_RS11930 0.58 -0.7 2,674,667 + ABZR86_RS11930 0.58 -0.7 2,674,668 - ABZR86_RS11930 0.58 -0.1 2,674,706 + ABZR86_RS11930 0.61 -0.1 2,674,778 + ABZR86_RS11930 0.67 -0.0 2,674,831 + ABZR86_RS11930 0.71 +0.3 2,674,887 - ABZR86_RS11930 0.75 +0.5 2,675,124 + +0.3 2,675,486 - ABZR86_RS11935 0.16 -2.9 2,675,721 + ABZR86_RS11935 0.30 +0.1 2,675,891 - ABZR86_RS11935 0.40 +0.4 2,676,046 + ABZR86_RS11935 0.49 -0.5 2,676,047 - ABZR86_RS11935 0.49 -0.3 2,676,047 - ABZR86_RS11935 0.49 +0.6 2,676,133 + ABZR86_RS11935 0.54 +0.3 2,676,133 + ABZR86_RS11935 0.54 -0.3
Or see this region's nucleotide sequence