Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS09720 and ABZR86_RS09725 are separated by 2 nucleotides ABZR86_RS09725 and ABZR86_RS09730 are separated by 9 nucleotides ABZR86_RS09730 and ABZR86_RS09735 overlap by 4 nucleotides ABZR86_RS09735 and ABZR86_RS09740 are separated by 15 nucleotides ABZR86_RS09740 and ABZR86_RS09745 are separated by 246 nucleotides ABZR86_RS09745 and ABZR86_RS09750 are separated by 76 nucleotides
ABZR86_RS09720: ABZR86_RS09720 - flagellar basal body rod protein FlgC, at 2,163,137 to 2,163,535
_RS09720
ABZR86_RS09725: ABZR86_RS09725 - flagellar hook capping FlgD N-terminal domain-containing protein, at 2,163,538 to 2,164,236
_RS09725
ABZR86_RS09730: ABZR86_RS09730 - flagellar hook-basal body complex protein, at 2,164,246 to 2,165,061
_RS09730
ABZR86_RS09735: ABZR86_RS09735 - hypothetical protein, at 2,165,058 to 2,165,291
_RS09735
ABZR86_RS09740: ABZR86_RS09740 - flagellar hook-basal body complex protein FliE, at 2,165,307 to 2,165,624
_RS09740
ABZR86_RS09745: ABZR86_RS09745 - tRNA-Val, at 2,165,871 to 2,165,945
_RS09745
ABZR86_RS09750: ABZR86_RS09750 - excinuclease ABC subunit UvrB, at 2,166,022 to 2,168,043
_RS09750
Position (kb)
2164
2165
2166 Strain fitness (log2 ratio)
-2
-1
0
1 at 2163.928 kb on - strand, within ABZR86_RS09725 at 2163.928 kb on - strand, within ABZR86_RS09725 at 2163.938 kb on + strand, within ABZR86_RS09725 at 2163.938 kb on + strand, within ABZR86_RS09725 at 2163.938 kb on + strand, within ABZR86_RS09725 at 2163.939 kb on - strand, within ABZR86_RS09725 at 2164.048 kb on + strand, within ABZR86_RS09725 at 2164.048 kb on + strand, within ABZR86_RS09725 at 2164.048 kb on + strand, within ABZR86_RS09725 at 2164.049 kb on - strand, within ABZR86_RS09725 at 2164.049 kb on - strand, within ABZR86_RS09725 at 2164.049 kb on - strand, within ABZR86_RS09725 at 2164.049 kb on - strand, within ABZR86_RS09725 at 2164.142 kb on + strand, within ABZR86_RS09725 at 2164.142 kb on + strand, within ABZR86_RS09725 at 2164.142 kb on + strand, within ABZR86_RS09725 at 2164.142 kb on + strand, within ABZR86_RS09725 at 2164.143 kb on - strand, within ABZR86_RS09725 at 2164.234 kb on + strand at 2164.235 kb on - strand at 2164.372 kb on + strand, within ABZR86_RS09730 at 2164.373 kb on - strand, within ABZR86_RS09730 at 2164.373 kb on - strand, within ABZR86_RS09730 at 2164.399 kb on + strand, within ABZR86_RS09730 at 2164.399 kb on + strand, within ABZR86_RS09730 at 2164.399 kb on + strand, within ABZR86_RS09730 at 2164.399 kb on + strand, within ABZR86_RS09730 at 2164.399 kb on + strand, within ABZR86_RS09730 at 2164.400 kb on - strand, within ABZR86_RS09730 at 2164.400 kb on - strand, within ABZR86_RS09730 at 2164.400 kb on - strand, within ABZR86_RS09730 at 2164.400 kb on - strand, within ABZR86_RS09730 at 2164.400 kb on - strand, within ABZR86_RS09730 at 2164.400 kb on - strand, within ABZR86_RS09730 at 2164.525 kb on + strand, within ABZR86_RS09730 at 2164.525 kb on + strand, within ABZR86_RS09730 at 2164.525 kb on + strand, within ABZR86_RS09730 at 2164.525 kb on + strand, within ABZR86_RS09730 at 2164.526 kb on - strand, within ABZR86_RS09730 at 2164.526 kb on - strand, within ABZR86_RS09730 at 2164.601 kb on - strand, within ABZR86_RS09730 at 2164.601 kb on - strand, within ABZR86_RS09730 at 2164.620 kb on + strand, within ABZR86_RS09730 at 2164.756 kb on + strand, within ABZR86_RS09730 at 2164.756 kb on + strand, within ABZR86_RS09730 at 2164.756 kb on + strand, within ABZR86_RS09730 at 2164.756 kb on + strand, within ABZR86_RS09730 at 2164.757 kb on - strand, within ABZR86_RS09730 at 2164.757 kb on - strand, within ABZR86_RS09730 at 2164.757 kb on - strand, within ABZR86_RS09730 at 2164.757 kb on - strand, within ABZR86_RS09730 at 2164.758 kb on + strand, within ABZR86_RS09730 at 2164.759 kb on - strand, within ABZR86_RS09730 at 2164.858 kb on + strand, within ABZR86_RS09730 at 2164.858 kb on + strand, within ABZR86_RS09730 at 2164.858 kb on + strand, within ABZR86_RS09730 at 2164.859 kb on - strand, within ABZR86_RS09730 at 2164.859 kb on - strand, within ABZR86_RS09730 at 2164.859 kb on - strand, within ABZR86_RS09730 at 2164.890 kb on + strand, within ABZR86_RS09730 at 2164.891 kb on - strand, within ABZR86_RS09730 at 2164.891 kb on - strand, within ABZR86_RS09730 at 2165.017 kb on + strand at 2165.017 kb on + strand at 2165.017 kb on + strand at 2165.017 kb on + strand at 2165.017 kb on + strand at 2165.017 kb on + strand at 2165.017 kb on + strand at 2165.017 kb on + strand at 2165.018 kb on - strand at 2165.018 kb on - strand at 2165.018 kb on - strand at 2165.018 kb on - strand at 2165.018 kb on - strand at 2165.018 kb on - strand at 2165.018 kb on - strand at 2165.018 kb on - strand at 2165.018 kb on - strand at 2165.018 kb on - strand at 2165.018 kb on - strand at 2165.018 kb on - strand at 2165.737 kb on - strand at 2165.824 kb on - strand at 2165.824 kb on - strand at 2165.867 kb on + strand at 2165.867 kb on + strand at 2165.867 kb on + strand at 2165.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 2,163,928 - ABZR86_RS09725 0.56 -0.1 2,163,928 - ABZR86_RS09725 0.56 -0.1 2,163,938 + ABZR86_RS09725 0.57 +0.4 2,163,938 + ABZR86_RS09725 0.57 +0.0 2,163,938 + ABZR86_RS09725 0.57 +0.5 2,163,939 - ABZR86_RS09725 0.57 +0.4 2,164,048 + ABZR86_RS09725 0.73 -0.2 2,164,048 + ABZR86_RS09725 0.73 +0.7 2,164,048 + ABZR86_RS09725 0.73 -0.2 2,164,049 - ABZR86_RS09725 0.73 -0.4 2,164,049 - ABZR86_RS09725 0.73 -1.1 2,164,049 - ABZR86_RS09725 0.73 -0.0 2,164,049 - ABZR86_RS09725 0.73 +0.1 2,164,142 + ABZR86_RS09725 0.86 +0.2 2,164,142 + ABZR86_RS09725 0.86 -0.5 2,164,142 + ABZR86_RS09725 0.86 +0.4 2,164,142 + ABZR86_RS09725 0.86 +0.8 2,164,143 - ABZR86_RS09725 0.87 -0.0 2,164,234 + +0.4 2,164,235 - +1.2 2,164,372 + ABZR86_RS09730 0.15 +0.2 2,164,373 - ABZR86_RS09730 0.16 +0.3 2,164,373 - ABZR86_RS09730 0.16 -0.2 2,164,399 + ABZR86_RS09730 0.19 +0.1 2,164,399 + ABZR86_RS09730 0.19 +0.4 2,164,399 + ABZR86_RS09730 0.19 -0.1 2,164,399 + ABZR86_RS09730 0.19 -0.1 2,164,399 + ABZR86_RS09730 0.19 -0.2 2,164,400 - ABZR86_RS09730 0.19 -2.7 2,164,400 - ABZR86_RS09730 0.19 +0.0 2,164,400 - ABZR86_RS09730 0.19 -0.0 2,164,400 - ABZR86_RS09730 0.19 +1.5 2,164,400 - ABZR86_RS09730 0.19 +0.4 2,164,400 - ABZR86_RS09730 0.19 +0.7 2,164,525 + ABZR86_RS09730 0.34 -0.3 2,164,525 + ABZR86_RS09730 0.34 -0.3 2,164,525 + ABZR86_RS09730 0.34 +0.8 2,164,525 + ABZR86_RS09730 0.34 -0.3 2,164,526 - ABZR86_RS09730 0.34 +0.5 2,164,526 - ABZR86_RS09730 0.34 +0.0 2,164,601 - ABZR86_RS09730 0.44 -0.5 2,164,601 - ABZR86_RS09730 0.44 -0.1 2,164,620 + ABZR86_RS09730 0.46 -0.4 2,164,756 + ABZR86_RS09730 0.62 -0.4 2,164,756 + ABZR86_RS09730 0.62 -0.5 2,164,756 + ABZR86_RS09730 0.62 +0.1 2,164,756 + ABZR86_RS09730 0.62 -0.1 2,164,757 - ABZR86_RS09730 0.63 +0.3 2,164,757 - ABZR86_RS09730 0.63 +0.3 2,164,757 - ABZR86_RS09730 0.63 -0.2 2,164,757 - ABZR86_RS09730 0.63 -0.2 2,164,758 + ABZR86_RS09730 0.63 -0.8 2,164,759 - ABZR86_RS09730 0.63 +0.3 2,164,858 + ABZR86_RS09730 0.75 +0.0 2,164,858 + ABZR86_RS09730 0.75 +0.4 2,164,858 + ABZR86_RS09730 0.75 +0.6 2,164,859 - ABZR86_RS09730 0.75 -0.0 2,164,859 - ABZR86_RS09730 0.75 -0.3 2,164,859 - ABZR86_RS09730 0.75 +0.1 2,164,890 + ABZR86_RS09730 0.79 -0.5 2,164,891 - ABZR86_RS09730 0.79 -0.1 2,164,891 - ABZR86_RS09730 0.79 +0.4 2,165,017 + +0.9 2,165,017 + +0.8 2,165,017 + +0.1 2,165,017 + -1.8 2,165,017 + -0.8 2,165,017 + +0.2 2,165,017 + -1.1 2,165,017 + +0.0 2,165,018 - +0.3 2,165,018 - +0.0 2,165,018 - -0.7 2,165,018 - -0.5 2,165,018 - +0.0 2,165,018 - +0.5 2,165,018 - +0.2 2,165,018 - -0.2 2,165,018 - -0.1 2,165,018 - -0.2 2,165,018 - +0.4 2,165,018 - -0.3 2,165,737 - +0.0 2,165,824 - +0.1 2,165,824 - +0.5 2,165,867 + -0.1 2,165,867 + +0.1 2,165,867 + +0.2 2,165,868 - -0.6
Or see this region's nucleotide sequence