Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08335

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08330 and ABZR86_RS08335 are separated by 480 nucleotidesABZR86_RS08335 and ABZR86_RS08340 are separated by 207 nucleotides ABZR86_RS08330: ABZR86_RS08330 - PIN domain-containing protein, at 1,856,266 to 1,856,832 _RS08330 ABZR86_RS08335: ABZR86_RS08335 - hypothetical protein, at 1,857,313 to 1,857,771 _RS08335 ABZR86_RS08340: ABZR86_RS08340 - adenylosuccinate synthase, at 1,857,979 to 1,859,271 _RS08340 Position (kb) 1857 1858Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1856.523 kb on - strand, within ABZR86_RS08330at 1856.630 kb on - strand, within ABZR86_RS08330at 1856.630 kb on - strand, within ABZR86_RS08330at 1856.766 kb on + strand, within ABZR86_RS08330at 1856.766 kb on + strand, within ABZR86_RS08330at 1856.767 kb on - strand, within ABZR86_RS08330at 1856.767 kb on - strand, within ABZR86_RS08330at 1856.828 kb on + strandat 1856.828 kb on + strandat 1856.829 kb on - strandat 1856.829 kb on - strandat 1856.829 kb on - strandat 1856.829 kb on - strandat 1856.829 kb on - strandat 1856.830 kb on + strandat 1856.830 kb on + strandat 1856.830 kb on + strandat 1856.830 kb on + strandat 1856.830 kb on + strandat 1856.830 kb on + strandat 1856.942 kb on + strandat 1856.942 kb on + strandat 1856.943 kb on - strandat 1856.943 kb on - strandat 1857.091 kb on + strandat 1857.091 kb on + strandat 1857.091 kb on + strandat 1857.092 kb on - strandat 1857.092 kb on - strandat 1857.092 kb on - strandat 1857.092 kb on - strandat 1857.092 kb on - strandat 1857.118 kb on - strandat 1857.165 kb on - strandat 1857.201 kb on + strandat 1857.201 kb on + strandat 1857.201 kb on + strandat 1857.201 kb on + strandat 1857.202 kb on - strandat 1857.302 kb on - strandat 1857.335 kb on + strandat 1857.335 kb on + strandat 1857.335 kb on + strandat 1857.336 kb on - strandat 1857.336 kb on - strandat 1857.339 kb on + strandat 1857.339 kb on + strandat 1857.339 kb on + strandat 1857.339 kb on + strandat 1857.340 kb on - strandat 1857.340 kb on - strandat 1858.080 kb on - strandat 1858.080 kb on - strandat 1858.463 kb on + strand, within ABZR86_RS08340at 1858.464 kb on - strand, within ABZR86_RS08340at 1858.464 kb on - strand, within ABZR86_RS08340at 1858.488 kb on - strand, within ABZR86_RS08340at 1858.565 kb on + strand, within ABZR86_RS08340at 1858.566 kb on - strand, within ABZR86_RS08340at 1858.610 kb on + strand, within ABZR86_RS08340at 1858.610 kb on + strand, within ABZR86_RS08340at 1858.611 kb on - strand, within ABZR86_RS08340

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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1,856,523 - ABZR86_RS08330 0.45 -2.2
1,856,630 - ABZR86_RS08330 0.64 -0.1
1,856,630 - ABZR86_RS08330 0.64 +0.1
1,856,766 + ABZR86_RS08330 0.88 -0.5
1,856,766 + ABZR86_RS08330 0.88 -0.3
1,856,767 - ABZR86_RS08330 0.88 +0.9
1,856,767 - ABZR86_RS08330 0.88 -0.0
1,856,828 + -0.6
1,856,828 + +0.5
1,856,829 - -1.1
1,856,829 - +0.3
1,856,829 - -0.2
1,856,829 - -0.4
1,856,829 - -0.4
1,856,830 + +0.9
1,856,830 + +0.7
1,856,830 + -0.9
1,856,830 + +0.0
1,856,830 + -0.3
1,856,830 + -0.4
1,856,942 + -1.6
1,856,942 + +0.0
1,856,943 - -0.5
1,856,943 - -0.7
1,857,091 + +0.5
1,857,091 + +0.6
1,857,091 + -0.3
1,857,092 - -0.9
1,857,092 - -0.1
1,857,092 - -0.3
1,857,092 - +1.5
1,857,092 - -1.2
1,857,118 - +1.0
1,857,165 - -0.2
1,857,201 + -0.0
1,857,201 + +0.3
1,857,201 + -0.5
1,857,201 + +0.1
1,857,202 - +0.4
1,857,302 - -0.4
1,857,335 + -0.0
1,857,335 + +0.2
1,857,335 + -0.2
1,857,336 - -0.6
1,857,336 - +0.3
1,857,339 + -0.5
1,857,339 + -1.0
1,857,339 + +0.6
1,857,339 + -0.2
1,857,340 - +0.4
1,857,340 - -1.0
1,858,080 - -3.8
1,858,080 - -2.6
1,858,463 + ABZR86_RS08340 0.37 -3.1
1,858,464 - ABZR86_RS08340 0.38 -4.2
1,858,464 - ABZR86_RS08340 0.38 -2.5
1,858,488 - ABZR86_RS08340 0.39 -3.9
1,858,565 + ABZR86_RS08340 0.45 -3.7
1,858,566 - ABZR86_RS08340 0.45 -4.3
1,858,610 + ABZR86_RS08340 0.49 -2.2
1,858,610 + ABZR86_RS08340 0.49 -2.4
1,858,611 - ABZR86_RS08340 0.49 -2.3

Or see this region's nucleotide sequence