Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06370

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06360 and ABZR86_RS06365 are separated by 76 nucleotidesABZR86_RS06365 and ABZR86_RS06370 are separated by 26 nucleotidesABZR86_RS06370 and ABZR86_RS06375 are separated by 137 nucleotidesABZR86_RS06375 and ABZR86_RS06380 are separated by 68 nucleotides ABZR86_RS06360: ABZR86_RS06360 - cell wall hydrolase, at 1,416,882 to 1,417,316 _RS06360 ABZR86_RS06365: ABZR86_RS06365 - glycine zipper 2TM domain-containing protein, at 1,417,393 to 1,417,878 _RS06365 ABZR86_RS06370: ABZR86_RS06370 - glycine zipper 2TM domain-containing protein, at 1,417,905 to 1,418,495 _RS06370 ABZR86_RS06375: ABZR86_RS06375 - TatD family hydrolase, at 1,418,633 to 1,419,400 _RS06375 ABZR86_RS06380: ABZR86_RS06380 - MarR family transcriptional regulator, at 1,419,469 to 1,419,996 _RS06380 Position (kb) 1417 1418 1419Strain fitness (log2 ratio) -2 -1 0 1 2at 1416.963 kb on + strand, within ABZR86_RS06360at 1416.963 kb on + strand, within ABZR86_RS06360at 1416.964 kb on - strand, within ABZR86_RS06360at 1416.964 kb on - strand, within ABZR86_RS06360at 1417.121 kb on - strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.209 kb on + strand, within ABZR86_RS06360at 1417.210 kb on - strand, within ABZR86_RS06360at 1417.210 kb on - strand, within ABZR86_RS06360at 1417.210 kb on - strand, within ABZR86_RS06360at 1417.387 kb on + strandat 1417.388 kb on - strandat 1417.388 kb on - strandat 1417.388 kb on - strandat 1417.389 kb on + strandat 1417.389 kb on + strandat 1417.389 kb on + strandat 1417.389 kb on + strandat 1417.390 kb on - strandat 1417.390 kb on - strandat 1417.403 kb on + strandat 1417.404 kb on - strandat 1417.431 kb on - strandat 1417.758 kb on - strand, within ABZR86_RS06365at 1417.775 kb on + strand, within ABZR86_RS06365at 1417.775 kb on + strand, within ABZR86_RS06365at 1417.775 kb on + strand, within ABZR86_RS06365at 1417.776 kb on - strand, within ABZR86_RS06365at 1417.776 kb on - strand, within ABZR86_RS06365at 1417.776 kb on - strand, within ABZR86_RS06365at 1417.776 kb on - strand, within ABZR86_RS06365at 1417.779 kb on - strand, within ABZR86_RS06365at 1417.869 kb on + strandat 1417.869 kb on + strandat 1417.869 kb on + strandat 1417.870 kb on - strandat 1417.870 kb on - strandat 1418.002 kb on + strand, within ABZR86_RS06370at 1418.002 kb on + strand, within ABZR86_RS06370at 1418.003 kb on - strand, within ABZR86_RS06370at 1418.003 kb on - strand, within ABZR86_RS06370at 1418.003 kb on - strand, within ABZR86_RS06370at 1418.347 kb on + strand, within ABZR86_RS06370at 1418.347 kb on + strand, within ABZR86_RS06370at 1418.348 kb on - strand, within ABZR86_RS06370at 1418.423 kb on + strand, within ABZR86_RS06370at 1418.468 kb on + strandat 1418.468 kb on + strandat 1418.495 kb on + strandat 1418.495 kb on + strandat 1418.495 kb on + strandat 1418.495 kb on + strandat 1418.495 kb on + strandat 1418.496 kb on - strandat 1418.496 kb on - strandat 1418.496 kb on - strandat 1418.496 kb on - strandat 1418.496 kb on - strandat 1418.496 kb on - strandat 1418.496 kb on - strandat 1418.550 kb on + strandat 1418.550 kb on + strandat 1418.551 kb on - strandat 1418.589 kb on + strandat 1418.589 kb on + strandat 1418.589 kb on + strandat 1418.590 kb on - strandat 1418.604 kb on + strandat 1418.609 kb on + strandat 1418.610 kb on - strandat 1418.644 kb on - strandat 1418.784 kb on + strand, within ABZR86_RS06375at 1418.784 kb on + strand, within ABZR86_RS06375at 1418.784 kb on + strand, within ABZR86_RS06375at 1418.785 kb on - strand, within ABZR86_RS06375at 1418.785 kb on - strand, within ABZR86_RS06375at 1418.785 kb on - strand, within ABZR86_RS06375at 1418.785 kb on - strand, within ABZR86_RS06375at 1418.817 kb on - strand, within ABZR86_RS06375at 1418.927 kb on + strand, within ABZR86_RS06375at 1418.927 kb on + strand, within ABZR86_RS06375at 1418.927 kb on + strand, within ABZR86_RS06375at 1418.928 kb on - strand, within ABZR86_RS06375at 1418.928 kb on - strand, within ABZR86_RS06375at 1418.966 kb on + strand, within ABZR86_RS06375at 1418.966 kb on + strand, within ABZR86_RS06375at 1418.967 kb on - strand, within ABZR86_RS06375at 1418.967 kb on - strand, within ABZR86_RS06375at 1418.988 kb on + strand, within ABZR86_RS06375at 1418.988 kb on + strand, within ABZR86_RS06375at 1418.989 kb on - strand, within ABZR86_RS06375at 1418.989 kb on - strand, within ABZR86_RS06375at 1419.057 kb on + strand, within ABZR86_RS06375at 1419.057 kb on + strand, within ABZR86_RS06375at 1419.171 kb on - strand, within ABZR86_RS06375at 1419.171 kb on - strand, within ABZR86_RS06375at 1419.221 kb on + strand, within ABZR86_RS06375at 1419.222 kb on - strand, within ABZR86_RS06375at 1419.350 kb on - strandat 1419.436 kb on + strandat 1419.436 kb on + strandat 1419.436 kb on + strandat 1419.439 kb on + strandat 1419.439 kb on + strandat 1419.440 kb on - strandat 1419.455 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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1,416,963 + ABZR86_RS06360 0.19 -1.4
1,416,963 + ABZR86_RS06360 0.19 -1.3
1,416,964 - ABZR86_RS06360 0.19 -1.7
1,416,964 - ABZR86_RS06360 0.19 +0.0
1,417,121 - ABZR86_RS06360 0.55 -0.5
1,417,209 + ABZR86_RS06360 0.75 -0.4
1,417,209 + ABZR86_RS06360 0.75 -0.3
1,417,209 + ABZR86_RS06360 0.75 -1.3
1,417,209 + ABZR86_RS06360 0.75 -0.9
1,417,209 + ABZR86_RS06360 0.75 -1.4
1,417,209 + ABZR86_RS06360 0.75 -1.0
1,417,209 + ABZR86_RS06360 0.75 -0.0
1,417,209 + ABZR86_RS06360 0.75 -0.6
1,417,209 + ABZR86_RS06360 0.75 -0.6
1,417,209 + ABZR86_RS06360 0.75 -2.4
1,417,209 + ABZR86_RS06360 0.75 -1.2
1,417,209 + ABZR86_RS06360 0.75 -1.5
1,417,210 - ABZR86_RS06360 0.75 +0.7
1,417,210 - ABZR86_RS06360 0.75 -0.9
1,417,210 - ABZR86_RS06360 0.75 -0.6
1,417,387 + -0.0
1,417,388 - -1.2
1,417,388 - +0.1
1,417,388 - +0.0
1,417,389 + -0.3
1,417,389 + +0.6
1,417,389 + -0.0
1,417,389 + -0.7
1,417,390 - +0.0
1,417,390 - +0.2
1,417,403 + +0.7
1,417,404 - +0.2
1,417,431 - +0.2
1,417,758 - ABZR86_RS06365 0.75 +0.5
1,417,775 + ABZR86_RS06365 0.79 +0.2
1,417,775 + ABZR86_RS06365 0.79 -0.4
1,417,775 + ABZR86_RS06365 0.79 -0.7
1,417,776 - ABZR86_RS06365 0.79 -0.0
1,417,776 - ABZR86_RS06365 0.79 +0.3
1,417,776 - ABZR86_RS06365 0.79 -1.0
1,417,776 - ABZR86_RS06365 0.79 -0.5
1,417,779 - ABZR86_RS06365 0.79 -0.5
1,417,869 + +0.4
1,417,869 + +0.2
1,417,869 + +0.4
1,417,870 - -0.2
1,417,870 - +0.5
1,418,002 + ABZR86_RS06370 0.16 +2.0
1,418,002 + ABZR86_RS06370 0.16 -0.5
1,418,003 - ABZR86_RS06370 0.17 +0.5
1,418,003 - ABZR86_RS06370 0.17 +0.1
1,418,003 - ABZR86_RS06370 0.17 -0.7
1,418,347 + ABZR86_RS06370 0.75 +0.2
1,418,347 + ABZR86_RS06370 0.75 +0.0
1,418,348 - ABZR86_RS06370 0.75 +1.0
1,418,423 + ABZR86_RS06370 0.88 +0.7
1,418,468 + -0.3
1,418,468 + +0.9
1,418,495 + -0.5
1,418,495 + +0.3
1,418,495 + -0.4
1,418,495 + +0.1
1,418,495 + -1.1
1,418,496 - -0.2
1,418,496 - -0.0
1,418,496 - -0.4
1,418,496 - +0.3
1,418,496 - -0.3
1,418,496 - -1.2
1,418,496 - -1.6
1,418,550 + -0.1
1,418,550 + +0.1
1,418,551 - -0.8
1,418,589 + -1.4
1,418,589 + -0.7
1,418,589 + -1.0
1,418,590 - -1.0
1,418,604 + +0.6
1,418,609 + -0.3
1,418,610 - -1.4
1,418,644 - -0.4
1,418,784 + ABZR86_RS06375 0.20 -0.1
1,418,784 + ABZR86_RS06375 0.20 +0.4
1,418,784 + ABZR86_RS06375 0.20 +0.7
1,418,785 - ABZR86_RS06375 0.20 -1.8
1,418,785 - ABZR86_RS06375 0.20 -0.6
1,418,785 - ABZR86_RS06375 0.20 +0.1
1,418,785 - ABZR86_RS06375 0.20 +0.3
1,418,817 - ABZR86_RS06375 0.24 +0.0
1,418,927 + ABZR86_RS06375 0.38 +0.1
1,418,927 + ABZR86_RS06375 0.38 +0.6
1,418,927 + ABZR86_RS06375 0.38 +1.7
1,418,928 - ABZR86_RS06375 0.38 -0.0
1,418,928 - ABZR86_RS06375 0.38 +0.2
1,418,966 + ABZR86_RS06375 0.43 +0.6
1,418,966 + ABZR86_RS06375 0.43 +0.2
1,418,967 - ABZR86_RS06375 0.43 -0.2
1,418,967 - ABZR86_RS06375 0.43 +0.9
1,418,988 + ABZR86_RS06375 0.46 -0.2
1,418,988 + ABZR86_RS06375 0.46 +0.2
1,418,989 - ABZR86_RS06375 0.46 -0.6
1,418,989 - ABZR86_RS06375 0.46 -0.1
1,419,057 + ABZR86_RS06375 0.55 -0.3
1,419,057 + ABZR86_RS06375 0.55 +0.0
1,419,171 - ABZR86_RS06375 0.70 -0.7
1,419,171 - ABZR86_RS06375 0.70 -0.8
1,419,221 + ABZR86_RS06375 0.77 +1.0
1,419,222 - ABZR86_RS06375 0.77 -0.8
1,419,350 - +0.1
1,419,436 + -1.0
1,419,436 + -0.3
1,419,436 + -2.1
1,419,439 + -0.3
1,419,439 + -0.7
1,419,440 - -0.1
1,419,455 + -0.0

Or see this region's nucleotide sequence