Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS06005 and ABZR86_RS06010 are separated by 18 nucleotides ABZR86_RS06010 and ABZR86_RS06015 are separated by 162 nucleotides ABZR86_RS06015 and ABZR86_RS06020 overlap by 1 nucleotides ABZR86_RS06020 and ABZR86_RS06025 are separated by 146 nucleotides
ABZR86_RS06005: ABZR86_RS06005 - polyribonucleotide nucleotidyltransferase, at 1,348,570 to 1,350,669
_RS06005
ABZR86_RS06010: ABZR86_RS06010 - 30S ribosomal protein S15, at 1,350,688 to 1,350,957
_RS06010
ABZR86_RS06015: ABZR86_RS06015 - tRNA pseudouridine(55) synthase TruB, at 1,351,120 to 1,352,049
_RS06015
ABZR86_RS06020: ABZR86_RS06020 - 30S ribosome-binding factor RbfA, at 1,352,049 to 1,352,447
_RS06020
ABZR86_RS06025: ABZR86_RS06025 - translation initiation factor IF-2, at 1,352,594 to 1,355,401
_RS06025
Position (kb) 1351
1352
1353 Strain fitness (log2 ratio) -2
-1
0
1 at 1351.235 kb on + strand, within ABZR86_RS06015 at 1351.236 kb on - strand, within ABZR86_RS06015 at 1351.517 kb on + strand, within ABZR86_RS06015 at 1351.517 kb on + strand, within ABZR86_RS06015 at 1351.517 kb on + strand, within ABZR86_RS06015 at 1351.517 kb on + strand, within ABZR86_RS06015 at 1351.517 kb on + strand, within ABZR86_RS06015 at 1351.517 kb on + strand, within ABZR86_RS06015 at 1351.517 kb on + strand, within ABZR86_RS06015 at 1351.517 kb on + strand, within ABZR86_RS06015 at 1351.517 kb on + strand, within ABZR86_RS06015 at 1351.518 kb on - strand, within ABZR86_RS06015 at 1351.518 kb on - strand, within ABZR86_RS06015 at 1351.518 kb on - strand, within ABZR86_RS06015 at 1351.518 kb on - strand, within ABZR86_RS06015 at 1351.518 kb on - strand, within ABZR86_RS06015 at 1351.518 kb on - strand, within ABZR86_RS06015 at 1351.643 kb on + strand, within ABZR86_RS06015 at 1351.643 kb on + strand, within ABZR86_RS06015 at 1351.644 kb on - strand, within ABZR86_RS06015 at 1351.644 kb on - strand, within ABZR86_RS06015 at 1351.644 kb on - strand, within ABZR86_RS06015 at 1351.677 kb on - strand, within ABZR86_RS06015 at 1351.677 kb on - strand, within ABZR86_RS06015 at 1351.677 kb on - strand, within ABZR86_RS06015 at 1351.677 kb on - strand, within ABZR86_RS06015 at 1352.514 kb on - strand at 1352.560 kb on + strand at 1352.595 kb on + strand at 1352.595 kb on + strand at 1352.602 kb on + strand at 1352.602 kb on + strand at 1352.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 1,351,235 + ABZR86_RS06015 0.12 +1.7 1,351,236 - ABZR86_RS06015 0.12 -0.4 1,351,517 + ABZR86_RS06015 0.43 +0.5 1,351,517 + ABZR86_RS06015 0.43 -0.2 1,351,517 + ABZR86_RS06015 0.43 +1.0 1,351,517 + ABZR86_RS06015 0.43 +0.3 1,351,517 + ABZR86_RS06015 0.43 +0.4 1,351,517 + ABZR86_RS06015 0.43 -0.2 1,351,517 + ABZR86_RS06015 0.43 +0.2 1,351,517 + ABZR86_RS06015 0.43 -0.3 1,351,517 + ABZR86_RS06015 0.43 -0.5 1,351,518 - ABZR86_RS06015 0.43 -0.7 1,351,518 - ABZR86_RS06015 0.43 -0.4 1,351,518 - ABZR86_RS06015 0.43 -1.1 1,351,518 - ABZR86_RS06015 0.43 +0.1 1,351,518 - ABZR86_RS06015 0.43 +0.3 1,351,518 - ABZR86_RS06015 0.43 +0.1 1,351,643 + ABZR86_RS06015 0.56 -0.1 1,351,643 + ABZR86_RS06015 0.56 +0.4 1,351,644 - ABZR86_RS06015 0.56 -0.5 1,351,644 - ABZR86_RS06015 0.56 -0.0 1,351,644 - ABZR86_RS06015 0.56 -0.2 1,351,677 - ABZR86_RS06015 0.60 +0.6 1,351,677 - ABZR86_RS06015 0.60 +0.6 1,351,677 - ABZR86_RS06015 0.60 -0.3 1,351,677 - ABZR86_RS06015 0.60 +0.4 1,352,514 - +0.2 1,352,560 + -0.7 1,352,595 + +0.5 1,352,595 + -0.9 1,352,602 + -2.0 1,352,602 + -1.8 1,352,603 - -1.0
Or see this region's nucleotide sequence