Experiment: D-Glucosamine Hydrochloride (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05035 and ABZR86_RS05040 overlap by 4 nucleotides ABZR86_RS05040 and ABZR86_RS05045 are separated by 11 nucleotides ABZR86_RS05045 and ABZR86_RS05050 are separated by 29 nucleotides ABZR86_RS05050 and ABZR86_RS05055 are separated by 10 nucleotides
ABZR86_RS05035: ABZR86_RS05035 - hypothetical protein, at 1,137,195 to 1,137,542
_RS05035
ABZR86_RS05040: ABZR86_RS05040 - hypothetical protein, at 1,137,539 to 1,138,156
_RS05040
ABZR86_RS05045: ABZR86_RS05045 - putative porin, at 1,138,168 to 1,139,913
_RS05045
ABZR86_RS05050: ABZR86_RS05050 - energy transducer TonB, at 1,139,943 to 1,140,605
_RS05050
ABZR86_RS05055: ABZR86_RS05055 - biopolymer transporter ExbD, at 1,140,616 to 1,141,026
_RS05055
Position (kb)
1138
1139
1140 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1137.182 kb on - strand at 1137.182 kb on - strand at 1137.182 kb on - strand at 1137.182 kb on - strand at 1137.182 kb on - strand at 1137.185 kb on + strand at 1137.186 kb on - strand at 1137.186 kb on - strand at 1137.235 kb on + strand, within ABZR86_RS05035 at 1137.235 kb on + strand, within ABZR86_RS05035 at 1137.235 kb on + strand, within ABZR86_RS05035 at 1137.313 kb on + strand, within ABZR86_RS05035 at 1137.314 kb on - strand, within ABZR86_RS05035 at 1137.314 kb on - strand, within ABZR86_RS05035 at 1137.314 kb on - strand, within ABZR86_RS05035 at 1137.424 kb on + strand, within ABZR86_RS05035 at 1137.424 kb on + strand, within ABZR86_RS05035 at 1137.424 kb on + strand, within ABZR86_RS05035 at 1137.424 kb on + strand, within ABZR86_RS05035 at 1137.424 kb on + strand, within ABZR86_RS05035 at 1137.424 kb on + strand, within ABZR86_RS05035 at 1137.425 kb on - strand, within ABZR86_RS05035 at 1137.425 kb on - strand, within ABZR86_RS05035 at 1137.425 kb on - strand, within ABZR86_RS05035 at 1137.425 kb on - strand, within ABZR86_RS05035 at 1137.425 kb on - strand, within ABZR86_RS05035 at 1137.425 kb on - strand, within ABZR86_RS05035 at 1137.453 kb on + strand, within ABZR86_RS05035 at 1137.453 kb on + strand, within ABZR86_RS05035 at 1137.454 kb on - strand, within ABZR86_RS05035 at 1137.454 kb on - strand, within ABZR86_RS05035 at 1137.567 kb on + strand at 1137.568 kb on - strand at 1137.579 kb on + strand at 1137.580 kb on - strand at 1137.580 kb on - strand at 1137.580 kb on - strand at 1137.594 kb on + strand at 1137.676 kb on + strand, within ABZR86_RS05040 at 1137.684 kb on + strand, within ABZR86_RS05040 at 1137.684 kb on + strand, within ABZR86_RS05040 at 1137.684 kb on + strand, within ABZR86_RS05040 at 1137.684 kb on + strand, within ABZR86_RS05040 at 1137.684 kb on + strand, within ABZR86_RS05040 at 1137.685 kb on - strand, within ABZR86_RS05040 at 1137.685 kb on - strand, within ABZR86_RS05040 at 1137.685 kb on - strand, within ABZR86_RS05040 at 1137.714 kb on + strand, within ABZR86_RS05040 at 1137.715 kb on - strand, within ABZR86_RS05040 at 1137.715 kb on - strand, within ABZR86_RS05040 at 1137.715 kb on - strand, within ABZR86_RS05040 at 1138.139 kb on - strand at 1138.139 kb on - strand at 1138.139 kb on - strand at 1138.142 kb on + strand at 1138.245 kb on - strand at 1138.280 kb on + strand at 1138.373 kb on + strand, within ABZR86_RS05045 at 1138.374 kb on - strand, within ABZR86_RS05045 at 1138.374 kb on - strand, within ABZR86_RS05045 at 1138.374 kb on - strand, within ABZR86_RS05045 at 1138.374 kb on - strand, within ABZR86_RS05045 at 1138.470 kb on - strand, within ABZR86_RS05045 at 1138.470 kb on - strand, within ABZR86_RS05045 at 1138.506 kb on - strand, within ABZR86_RS05045 at 1138.506 kb on - strand, within ABZR86_RS05045 at 1138.506 kb on - strand, within ABZR86_RS05045 at 1138.565 kb on + strand, within ABZR86_RS05045 at 1138.565 kb on + strand, within ABZR86_RS05045 at 1138.566 kb on - strand, within ABZR86_RS05045 at 1138.583 kb on + strand, within ABZR86_RS05045 at 1138.608 kb on + strand, within ABZR86_RS05045 at 1138.656 kb on - strand, within ABZR86_RS05045 at 1138.692 kb on - strand, within ABZR86_RS05045 at 1138.761 kb on - strand, within ABZR86_RS05045 at 1138.847 kb on + strand, within ABZR86_RS05045 at 1138.850 kb on + strand, within ABZR86_RS05045 at 1138.850 kb on + strand, within ABZR86_RS05045 at 1138.851 kb on - strand, within ABZR86_RS05045 at 1138.853 kb on + strand, within ABZR86_RS05045 at 1138.857 kb on - strand, within ABZR86_RS05045 at 1138.991 kb on + strand, within ABZR86_RS05045 at 1139.094 kb on - strand, within ABZR86_RS05045 at 1139.442 kb on - strand, within ABZR86_RS05045 at 1139.466 kb on - strand, within ABZR86_RS05045 at 1139.608 kb on + strand, within ABZR86_RS05045 at 1139.608 kb on + strand, within ABZR86_RS05045 at 1139.608 kb on + strand, within ABZR86_RS05045 at 1139.624 kb on + strand, within ABZR86_RS05045 at 1140.187 kb on + strand, within ABZR86_RS05050 at 1140.188 kb on - strand, within ABZR86_RS05050 at 1140.707 kb on + strand, within ABZR86_RS05055 at 1140.708 kb on - strand, within ABZR86_RS05055
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N) remove 1,137,182 - -1.6 1,137,182 - +0.3 1,137,182 - +0.3 1,137,182 - -0.1 1,137,182 - -0.6 1,137,185 + +0.1 1,137,186 - -1.1 1,137,186 - -0.7 1,137,235 + ABZR86_RS05035 0.11 +0.1 1,137,235 + ABZR86_RS05035 0.11 +0.5 1,137,235 + ABZR86_RS05035 0.11 +0.1 1,137,313 + ABZR86_RS05035 0.34 -0.3 1,137,314 - ABZR86_RS05035 0.34 +0.0 1,137,314 - ABZR86_RS05035 0.34 -0.0 1,137,314 - ABZR86_RS05035 0.34 -0.1 1,137,424 + ABZR86_RS05035 0.66 +0.1 1,137,424 + ABZR86_RS05035 0.66 -0.2 1,137,424 + ABZR86_RS05035 0.66 +0.4 1,137,424 + ABZR86_RS05035 0.66 +0.6 1,137,424 + ABZR86_RS05035 0.66 -0.0 1,137,424 + ABZR86_RS05035 0.66 +0.1 1,137,425 - ABZR86_RS05035 0.66 -0.5 1,137,425 - ABZR86_RS05035 0.66 +0.1 1,137,425 - ABZR86_RS05035 0.66 -0.1 1,137,425 - ABZR86_RS05035 0.66 -0.2 1,137,425 - ABZR86_RS05035 0.66 -0.2 1,137,425 - ABZR86_RS05035 0.66 -0.9 1,137,453 + ABZR86_RS05035 0.74 -0.7 1,137,453 + ABZR86_RS05035 0.74 -0.4 1,137,454 - ABZR86_RS05035 0.74 -0.1 1,137,454 - ABZR86_RS05035 0.74 -0.7 1,137,567 + +0.7 1,137,568 - -0.3 1,137,579 + -0.1 1,137,580 - +0.1 1,137,580 - -0.5 1,137,580 - +0.0 1,137,594 + -0.2 1,137,676 + ABZR86_RS05040 0.22 +0.2 1,137,684 + ABZR86_RS05040 0.23 +0.2 1,137,684 + ABZR86_RS05040 0.23 -0.8 1,137,684 + ABZR86_RS05040 0.23 -0.8 1,137,684 + ABZR86_RS05040 0.23 -0.2 1,137,684 + ABZR86_RS05040 0.23 -1.6 1,137,685 - ABZR86_RS05040 0.24 -0.2 1,137,685 - ABZR86_RS05040 0.24 -0.6 1,137,685 - ABZR86_RS05040 0.24 +0.3 1,137,714 + ABZR86_RS05040 0.28 +0.3 1,137,715 - ABZR86_RS05040 0.28 +0.1 1,137,715 - ABZR86_RS05040 0.28 -1.0 1,137,715 - ABZR86_RS05040 0.28 -1.8 1,138,139 - -0.0 1,138,139 - +0.2 1,138,139 - -0.1 1,138,142 + +0.0 1,138,245 - -0.2 1,138,280 + -0.2 1,138,373 + ABZR86_RS05045 0.12 -1.5 1,138,374 - ABZR86_RS05045 0.12 -0.3 1,138,374 - ABZR86_RS05045 0.12 -0.6 1,138,374 - ABZR86_RS05045 0.12 -1.0 1,138,374 - ABZR86_RS05045 0.12 -0.4 1,138,470 - ABZR86_RS05045 0.17 +0.5 1,138,470 - ABZR86_RS05045 0.17 -0.1 1,138,506 - ABZR86_RS05045 0.19 -1.3 1,138,506 - ABZR86_RS05045 0.19 +0.4 1,138,506 - ABZR86_RS05045 0.19 -0.7 1,138,565 + ABZR86_RS05045 0.23 +1.3 1,138,565 + ABZR86_RS05045 0.23 +0.5 1,138,566 - ABZR86_RS05045 0.23 -0.4 1,138,583 + ABZR86_RS05045 0.24 +2.1 1,138,608 + ABZR86_RS05045 0.25 +0.4 1,138,656 - ABZR86_RS05045 0.28 +2.0 1,138,692 - ABZR86_RS05045 0.30 -0.2 1,138,761 - ABZR86_RS05045 0.34 -0.1 1,138,847 + ABZR86_RS05045 0.39 +0.2 1,138,850 + ABZR86_RS05045 0.39 -0.1 1,138,850 + ABZR86_RS05045 0.39 -0.6 1,138,851 - ABZR86_RS05045 0.39 +0.3 1,138,853 + ABZR86_RS05045 0.39 -0.2 1,138,857 - ABZR86_RS05045 0.39 +0.2 1,138,991 + ABZR86_RS05045 0.47 -0.8 1,139,094 - ABZR86_RS05045 0.53 -0.0 1,139,442 - ABZR86_RS05045 0.73 +0.1 1,139,466 - ABZR86_RS05045 0.74 +0.2 1,139,608 + ABZR86_RS05045 0.82 +0.1 1,139,608 + ABZR86_RS05045 0.82 -0.1 1,139,608 + ABZR86_RS05045 0.82 +0.7 1,139,624 + ABZR86_RS05045 0.83 +0.3 1,140,187 + ABZR86_RS05050 0.37 -0.3 1,140,188 - ABZR86_RS05050 0.37 +0.1 1,140,707 + ABZR86_RS05055 0.22 +0.5 1,140,708 - ABZR86_RS05055 0.22 -1.5
Or see this region's nucleotide sequence