Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS04630

Experiment: D-Glucosamine Hydrochloride (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS04620 and ABZR86_RS04625 are separated by 254 nucleotidesABZR86_RS04625 and ABZR86_RS04630 are separated by 154 nucleotidesABZR86_RS04630 and ABZR86_RS04635 are separated by 17 nucleotides ABZR86_RS04620: ABZR86_RS04620 - PAS domain-containing sensor histidine kinase, at 1,034,602 to 1,036,485 _RS04620 ABZR86_RS04625: ABZR86_RS04625 - hypothetical protein, at 1,036,740 to 1,037,093 _RS04625 ABZR86_RS04630: ABZR86_RS04630 - DUF535 family protein, at 1,037,248 to 1,038,267 _RS04630 ABZR86_RS04635: ABZR86_RS04635 - TonB-dependent receptor, at 1,038,285 to 1,040,693 _RS04635 Position (kb) 1037 1038 1039Strain fitness (log2 ratio) -2 -1 0 1 2at 1036.457 kb on + strandat 1036.457 kb on + strandat 1036.457 kb on + strandat 1036.457 kb on + strandat 1036.457 kb on + strandat 1036.457 kb on + strandat 1036.457 kb on + strandat 1036.457 kb on + strandat 1036.457 kb on + strandat 1036.457 kb on + strandat 1036.457 kb on + strandat 1036.457 kb on + strandat 1036.457 kb on + strandat 1036.458 kb on - strandat 1036.458 kb on - strandat 1036.458 kb on - strandat 1036.466 kb on + strandat 1036.466 kb on + strandat 1036.512 kb on + strandat 1036.566 kb on + strandat 1036.566 kb on + strandat 1036.566 kb on + strandat 1036.566 kb on + strandat 1036.566 kb on + strandat 1036.566 kb on + strandat 1036.566 kb on + strandat 1036.566 kb on + strandat 1036.566 kb on + strandat 1036.566 kb on + strandat 1036.566 kb on + strandat 1036.566 kb on + strandat 1036.567 kb on - strandat 1036.567 kb on - strandat 1036.567 kb on - strandat 1036.567 kb on - strandat 1036.567 kb on - strandat 1036.567 kb on - strandat 1036.567 kb on - strandat 1036.567 kb on - strandat 1036.570 kb on + strandat 1036.570 kb on + strandat 1036.571 kb on - strandat 1036.658 kb on + strandat 1036.658 kb on + strandat 1036.658 kb on + strandat 1036.658 kb on + strandat 1036.658 kb on + strandat 1036.658 kb on + strandat 1036.659 kb on - strandat 1036.659 kb on - strandat 1036.659 kb on - strandat 1036.659 kb on - strandat 1036.659 kb on - strandat 1036.659 kb on - strandat 1036.659 kb on - strandat 1036.659 kb on - strandat 1036.659 kb on - strandat 1036.659 kb on - strandat 1036.689 kb on + strandat 1036.689 kb on + strandat 1036.689 kb on + strandat 1036.689 kb on + strandat 1036.689 kb on + strandat 1036.690 kb on - strandat 1036.690 kb on - strandat 1036.690 kb on - strandat 1036.690 kb on - strandat 1036.690 kb on - strandat 1036.825 kb on - strand, within ABZR86_RS04625at 1036.863 kb on + strand, within ABZR86_RS04625at 1036.863 kb on + strand, within ABZR86_RS04625at 1036.863 kb on + strand, within ABZR86_RS04625at 1036.863 kb on + strand, within ABZR86_RS04625at 1036.864 kb on - strand, within ABZR86_RS04625at 1036.864 kb on - strand, within ABZR86_RS04625at 1036.914 kb on + strand, within ABZR86_RS04625at 1036.915 kb on - strand, within ABZR86_RS04625at 1036.915 kb on - strand, within ABZR86_RS04625at 1036.915 kb on - strand, within ABZR86_RS04625at 1036.915 kb on - strand, within ABZR86_RS04625at 1037.399 kb on - strand, within ABZR86_RS04630at 1037.504 kb on - strand, within ABZR86_RS04630at 1037.519 kb on + strand, within ABZR86_RS04630at 1037.519 kb on + strand, within ABZR86_RS04630at 1037.519 kb on + strand, within ABZR86_RS04630at 1037.519 kb on + strand, within ABZR86_RS04630at 1037.520 kb on - strand, within ABZR86_RS04630at 1037.520 kb on - strand, within ABZR86_RS04630at 1037.520 kb on - strand, within ABZR86_RS04630at 1037.734 kb on + strand, within ABZR86_RS04630at 1037.734 kb on + strand, within ABZR86_RS04630at 1037.734 kb on + strand, within ABZR86_RS04630at 1037.734 kb on + strand, within ABZR86_RS04630at 1037.735 kb on - strand, within ABZR86_RS04630at 1037.735 kb on - strand, within ABZR86_RS04630at 1037.932 kb on + strand, within ABZR86_RS04630at 1037.932 kb on + strand, within ABZR86_RS04630at 1037.932 kb on + strand, within ABZR86_RS04630at 1037.933 kb on - strand, within ABZR86_RS04630at 1037.933 kb on - strand, within ABZR86_RS04630at 1038.001 kb on + strand, within ABZR86_RS04630at 1038.001 kb on + strand, within ABZR86_RS04630at 1038.002 kb on - strand, within ABZR86_RS04630at 1038.052 kb on + strand, within ABZR86_RS04630at 1038.052 kb on + strand, within ABZR86_RS04630at 1038.052 kb on + strand, within ABZR86_RS04630at 1038.053 kb on - strand, within ABZR86_RS04630at 1038.053 kb on - strand, within ABZR86_RS04630at 1038.053 kb on - strand, within ABZR86_RS04630at 1038.053 kb on - strand, within ABZR86_RS04630at 1038.266 kb on - strandat 1038.266 kb on - strandat 1038.295 kb on + strandat 1038.296 kb on - strandat 1038.296 kb on - strandat 1038.296 kb on - strandat 1038.296 kb on - strandat 1038.296 kb on - strandat 1038.364 kb on + strandat 1038.364 kb on + strandat 1038.365 kb on - strandat 1038.365 kb on - strandat 1038.421 kb on + strandat 1038.421 kb on + strandat 1038.421 kb on + strandat 1038.422 kb on - strandat 1038.422 kb on - strandat 1038.424 kb on + strandat 1038.424 kb on + strandat 1038.424 kb on + strandat 1038.424 kb on + strandat 1038.425 kb on - strandat 1038.425 kb on - strandat 1038.425 kb on - strandat 1038.425 kb on - strandat 1038.425 kb on - strandat 1038.425 kb on - strandat 1038.425 kb on - strandat 1038.425 kb on - strandat 1038.470 kb on - strandat 1038.470 kb on - strandat 1038.563 kb on - strand, within ABZR86_RS04635at 1038.643 kb on + strand, within ABZR86_RS04635at 1038.643 kb on + strand, within ABZR86_RS04635at 1038.643 kb on + strand, within ABZR86_RS04635at 1038.644 kb on - strand, within ABZR86_RS04635at 1038.644 kb on - strand, within ABZR86_RS04635at 1038.736 kb on + strand, within ABZR86_RS04635at 1038.737 kb on - strand, within ABZR86_RS04635at 1038.737 kb on - strand, within ABZR86_RS04635at 1038.757 kb on + strand, within ABZR86_RS04635at 1038.757 kb on + strand, within ABZR86_RS04635at 1038.757 kb on + strand, within ABZR86_RS04635at 1038.757 kb on + strand, within ABZR86_RS04635at 1038.758 kb on - strand, within ABZR86_RS04635at 1038.758 kb on - strand, within ABZR86_RS04635at 1038.758 kb on - strand, within ABZR86_RS04635at 1038.931 kb on + strand, within ABZR86_RS04635at 1038.931 kb on + strand, within ABZR86_RS04635at 1038.931 kb on + strand, within ABZR86_RS04635at 1038.931 kb on + strand, within ABZR86_RS04635at 1038.931 kb on + strand, within ABZR86_RS04635at 1038.931 kb on + strand, within ABZR86_RS04635at 1038.931 kb on + strand, within ABZR86_RS04635at 1038.932 kb on - strand, within ABZR86_RS04635at 1038.932 kb on - strand, within ABZR86_RS04635at 1039.039 kb on + strand, within ABZR86_RS04635at 1039.039 kb on + strand, within ABZR86_RS04635at 1039.039 kb on + strand, within ABZR86_RS04635at 1039.039 kb on + strand, within ABZR86_RS04635at 1039.039 kb on + strand, within ABZR86_RS04635at 1039.039 kb on + strand, within ABZR86_RS04635at 1039.039 kb on + strand, within ABZR86_RS04635at 1039.039 kb on + strand, within ABZR86_RS04635at 1039.040 kb on - strand, within ABZR86_RS04635at 1039.040 kb on - strand, within ABZR86_RS04635at 1039.040 kb on - strand, within ABZR86_RS04635at 1039.040 kb on - strand, within ABZR86_RS04635at 1039.040 kb on - strand, within ABZR86_RS04635at 1039.040 kb on - strand, within ABZR86_RS04635at 1039.040 kb on - strand, within ABZR86_RS04635at 1039.213 kb on + strand, within ABZR86_RS04635at 1039.213 kb on + strand, within ABZR86_RS04635at 1039.213 kb on + strand, within ABZR86_RS04635at 1039.213 kb on + strand, within ABZR86_RS04635at 1039.214 kb on - strand, within ABZR86_RS04635at 1039.214 kb on - strand, within ABZR86_RS04635

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (N)
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1,036,457 + +0.6
1,036,457 + +0.3
1,036,457 + -0.3
1,036,457 + +0.1
1,036,457 + +0.2
1,036,457 + -0.1
1,036,457 + +0.3
1,036,457 + +0.2
1,036,457 + -1.1
1,036,457 + -0.1
1,036,457 + -0.5
1,036,457 + +0.2
1,036,457 + -0.6
1,036,458 - -0.5
1,036,458 - +0.3
1,036,458 - -0.0
1,036,466 + +0.1
1,036,466 + +0.8
1,036,512 + +0.0
1,036,566 + -2.6
1,036,566 + -2.0
1,036,566 + -0.8
1,036,566 + -0.4
1,036,566 + -0.7
1,036,566 + -1.3
1,036,566 + -0.9
1,036,566 + -1.7
1,036,566 + -0.2
1,036,566 + +0.0
1,036,566 + -0.4
1,036,566 + -0.4
1,036,567 - -0.0
1,036,567 - +1.4
1,036,567 - +0.3
1,036,567 - +0.3
1,036,567 - -0.6
1,036,567 - -1.6
1,036,567 - -0.4
1,036,567 - +0.2
1,036,570 + -0.3
1,036,570 + -0.6
1,036,571 - +0.0
1,036,658 + +0.1
1,036,658 + +0.9
1,036,658 + +0.0
1,036,658 + +0.3
1,036,658 + -0.5
1,036,658 + -0.8
1,036,659 - -0.6
1,036,659 - -0.8
1,036,659 - +0.1
1,036,659 - -0.7
1,036,659 - -0.0
1,036,659 - +1.0
1,036,659 - +0.1
1,036,659 - -1.1
1,036,659 - -0.4
1,036,659 - +0.1
1,036,689 + +0.7
1,036,689 + -1.4
1,036,689 + +0.3
1,036,689 + +0.3
1,036,689 + -0.1
1,036,690 - -0.6
1,036,690 - +0.1
1,036,690 - -0.5
1,036,690 - -0.7
1,036,690 - +0.5
1,036,825 - ABZR86_RS04625 0.24 +0.8
1,036,863 + ABZR86_RS04625 0.35 -1.0
1,036,863 + ABZR86_RS04625 0.35 -0.3
1,036,863 + ABZR86_RS04625 0.35 +0.4
1,036,863 + ABZR86_RS04625 0.35 +0.5
1,036,864 - ABZR86_RS04625 0.35 +1.1
1,036,864 - ABZR86_RS04625 0.35 -1.0
1,036,914 + ABZR86_RS04625 0.49 -0.1
1,036,915 - ABZR86_RS04625 0.49 +0.0
1,036,915 - ABZR86_RS04625 0.49 -0.1
1,036,915 - ABZR86_RS04625 0.49 -0.9
1,036,915 - ABZR86_RS04625 0.49 +0.6
1,037,399 - ABZR86_RS04630 0.15 -0.1
1,037,504 - ABZR86_RS04630 0.25 -0.3
1,037,519 + ABZR86_RS04630 0.27 -0.3
1,037,519 + ABZR86_RS04630 0.27 -0.1
1,037,519 + ABZR86_RS04630 0.27 +0.1
1,037,519 + ABZR86_RS04630 0.27 +0.4
1,037,520 - ABZR86_RS04630 0.27 +0.5
1,037,520 - ABZR86_RS04630 0.27 +0.4
1,037,520 - ABZR86_RS04630 0.27 -0.0
1,037,734 + ABZR86_RS04630 0.48 +0.4
1,037,734 + ABZR86_RS04630 0.48 +0.1
1,037,734 + ABZR86_RS04630 0.48 -0.2
1,037,734 + ABZR86_RS04630 0.48 +0.5
1,037,735 - ABZR86_RS04630 0.48 +0.3
1,037,735 - ABZR86_RS04630 0.48 -0.8
1,037,932 + ABZR86_RS04630 0.67 -0.4
1,037,932 + ABZR86_RS04630 0.67 +0.8
1,037,932 + ABZR86_RS04630 0.67 +0.6
1,037,933 - ABZR86_RS04630 0.67 -0.3
1,037,933 - ABZR86_RS04630 0.67 +0.2
1,038,001 + ABZR86_RS04630 0.74 -0.0
1,038,001 + ABZR86_RS04630 0.74 +0.1
1,038,002 - ABZR86_RS04630 0.74 +0.3
1,038,052 + ABZR86_RS04630 0.79 +0.5
1,038,052 + ABZR86_RS04630 0.79 +0.7
1,038,052 + ABZR86_RS04630 0.79 -0.3
1,038,053 - ABZR86_RS04630 0.79 +0.7
1,038,053 - ABZR86_RS04630 0.79 +0.1
1,038,053 - ABZR86_RS04630 0.79 +0.1
1,038,053 - ABZR86_RS04630 0.79 -0.4
1,038,266 - -0.4
1,038,266 - +0.2
1,038,295 + -0.4
1,038,296 - -1.5
1,038,296 - +0.1
1,038,296 - +0.5
1,038,296 - -0.1
1,038,296 - -0.8
1,038,364 + -0.2
1,038,364 + -0.6
1,038,365 - +0.6
1,038,365 - +0.4
1,038,421 + -1.0
1,038,421 + +0.4
1,038,421 + +0.7
1,038,422 - +0.3
1,038,422 - -0.0
1,038,424 + +0.2
1,038,424 + -0.6
1,038,424 + -0.1
1,038,424 + -0.3
1,038,425 - -0.3
1,038,425 - +0.6
1,038,425 - +0.1
1,038,425 - +0.3
1,038,425 - +0.1
1,038,425 - -0.1
1,038,425 - -0.4
1,038,425 - -0.0
1,038,470 - +0.4
1,038,470 - +0.1
1,038,563 - ABZR86_RS04635 0.12 +0.6
1,038,643 + ABZR86_RS04635 0.15 -0.6
1,038,643 + ABZR86_RS04635 0.15 +0.6
1,038,643 + ABZR86_RS04635 0.15 +0.0
1,038,644 - ABZR86_RS04635 0.15 +1.0
1,038,644 - ABZR86_RS04635 0.15 +0.1
1,038,736 + ABZR86_RS04635 0.19 -0.8
1,038,737 - ABZR86_RS04635 0.19 +0.4
1,038,737 - ABZR86_RS04635 0.19 -0.5
1,038,757 + ABZR86_RS04635 0.20 +0.1
1,038,757 + ABZR86_RS04635 0.20 -0.1
1,038,757 + ABZR86_RS04635 0.20 +0.5
1,038,757 + ABZR86_RS04635 0.20 -2.2
1,038,758 - ABZR86_RS04635 0.20 -0.2
1,038,758 - ABZR86_RS04635 0.20 +0.6
1,038,758 - ABZR86_RS04635 0.20 -1.4
1,038,931 + ABZR86_RS04635 0.27 +0.0
1,038,931 + ABZR86_RS04635 0.27 +1.0
1,038,931 + ABZR86_RS04635 0.27 -0.0
1,038,931 + ABZR86_RS04635 0.27 -0.3
1,038,931 + ABZR86_RS04635 0.27 -0.3
1,038,931 + ABZR86_RS04635 0.27 +2.1
1,038,931 + ABZR86_RS04635 0.27 -0.9
1,038,932 - ABZR86_RS04635 0.27 -0.3
1,038,932 - ABZR86_RS04635 0.27 -2.1
1,039,039 + ABZR86_RS04635 0.31 +0.3
1,039,039 + ABZR86_RS04635 0.31 +0.1
1,039,039 + ABZR86_RS04635 0.31 -0.2
1,039,039 + ABZR86_RS04635 0.31 -1.4
1,039,039 + ABZR86_RS04635 0.31 +0.3
1,039,039 + ABZR86_RS04635 0.31 -0.1
1,039,039 + ABZR86_RS04635 0.31 -0.2
1,039,039 + ABZR86_RS04635 0.31 -0.3
1,039,040 - ABZR86_RS04635 0.31 -0.2
1,039,040 - ABZR86_RS04635 0.31 -0.1
1,039,040 - ABZR86_RS04635 0.31 -0.3
1,039,040 - ABZR86_RS04635 0.31 +0.1
1,039,040 - ABZR86_RS04635 0.31 -0.0
1,039,040 - ABZR86_RS04635 0.31 +0.1
1,039,040 - ABZR86_RS04635 0.31 -1.8
1,039,213 + ABZR86_RS04635 0.39 +0.1
1,039,213 + ABZR86_RS04635 0.39 +0.4
1,039,213 + ABZR86_RS04635 0.39 -0.0
1,039,213 + ABZR86_RS04635 0.39 -0.0
1,039,214 - ABZR86_RS04635 0.39 -0.3
1,039,214 - ABZR86_RS04635 0.39 -0.3

Or see this region's nucleotide sequence