Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2845

Experiment: Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2844 and Shewana3_2845 are separated by 171 nucleotidesShewana3_2845 and Shewana3_2846 are separated by 608 nucleotides Shewana3_2844: Shewana3_2844 - hypothetical protein (RefSeq), at 3,404,957 to 3,405,271 _2844 Shewana3_2845: Shewana3_2845 - hypothetical protein (RefSeq), at 3,405,443 to 3,405,871 _2845 Shewana3_2846: Shewana3_2846 - IS4 family transposase (RefSeq), at 3,406,480 to 3,408,093 _2846 Position (kb) 3405 3406Strain fitness (log2 ratio) -2 -1 0 1at 3404.515 kb on + strandat 3404.536 kb on - strandat 3404.536 kb on - strandat 3404.536 kb on - strandat 3404.576 kb on + strandat 3404.747 kb on - strandat 3404.831 kb on - strandat 3405.059 kb on + strand, within Shewana3_2844at 3405.067 kb on - strand, within Shewana3_2844at 3405.113 kb on - strand, within Shewana3_2844at 3405.118 kb on + strand, within Shewana3_2844at 3405.205 kb on - strand, within Shewana3_2844at 3405.279 kb on + strandat 3405.522 kb on + strand, within Shewana3_2845at 3405.830 kb on - strandat 3405.879 kb on + strandat 3405.887 kb on - strandat 3406.231 kb on + strandat 3406.240 kb on - strandat 3406.308 kb on - strandat 3406.308 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2.5 mM
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3,404,515 + -0.1
3,404,536 - -0.1
3,404,536 - +0.4
3,404,536 - +0.3
3,404,576 + -2.3
3,404,747 - +0.1
3,404,831 - +0.4
3,405,059 + Shewana3_2844 0.32 -0.2
3,405,067 - Shewana3_2844 0.35 -0.9
3,405,113 - Shewana3_2844 0.50 -2.4
3,405,118 + Shewana3_2844 0.51 +0.4
3,405,205 - Shewana3_2844 0.79 -0.3
3,405,279 + -0.5
3,405,522 + Shewana3_2845 0.18 -1.1
3,405,830 - -0.5
3,405,879 + -0.5
3,405,887 - +0.6
3,406,231 + -0.4
3,406,240 - +0.6
3,406,308 - -0.4
3,406,308 - +0.8

Or see this region's nucleotide sequence