Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2393 and Shewana3_2394 are separated by 377 nucleotides Shewana3_2394 and rbgA are separated by 136 nucleotides
Shewana3_2393: Shewana3_2393 - bifunctional methionine sulfoxide reductase B/A protein (RefSeq), at 2,871,948 to 2,872,853
_2393
Shewana3_2394: Shewana3_2394 - 2OG-Fe(II) oxygenase (RefSeq), at 2,873,231 to 2,874,070
_2394
Shewana3_2395: rbgA - ribosomal biogenesis GTPase (RefSeq), at 2,874,207 to 2,875,148
rbgA
Position (kb)
2873
2874
2875 Strain fitness (log2 ratio)
-1
0
1 at 2872.416 kb on - strand, within Shewana3_2393 at 2872.462 kb on - strand, within Shewana3_2393 at 2872.614 kb on - strand, within Shewana3_2393 at 2872.774 kb on + strand at 2872.929 kb on + strand at 2873.040 kb on + strand at 2873.058 kb on + strand at 2873.129 kb on + strand at 2873.136 kb on - strand at 2873.176 kb on + strand at 2873.269 kb on - strand at 2873.342 kb on - strand, within Shewana3_2394 at 2873.361 kb on - strand, within Shewana3_2394 at 2873.472 kb on + strand, within Shewana3_2394 at 2873.499 kb on - strand, within Shewana3_2394 at 2873.700 kb on - strand, within Shewana3_2394 at 2873.753 kb on + strand, within Shewana3_2394 at 2873.769 kb on - strand, within Shewana3_2394 at 2873.790 kb on + strand, within Shewana3_2394 at 2873.810 kb on + strand, within Shewana3_2394
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 2,872,416 - Shewana3_2393 0.52 +0.3 2,872,462 - Shewana3_2393 0.57 +0.7 2,872,614 - Shewana3_2393 0.74 +0.5 2,872,774 + +0.1 2,872,929 + -0.2 2,873,040 + +0.3 2,873,058 + +0.3 2,873,129 + -1.1 2,873,136 - +0.7 2,873,176 + +0.2 2,873,269 - -1.4 2,873,342 - Shewana3_2394 0.13 +0.8 2,873,361 - Shewana3_2394 0.15 -0.5 2,873,472 + Shewana3_2394 0.29 +0.7 2,873,499 - Shewana3_2394 0.32 +1.2 2,873,700 - Shewana3_2394 0.56 +0.5 2,873,753 + Shewana3_2394 0.62 +1.4 2,873,769 - Shewana3_2394 0.64 +0.3 2,873,790 + Shewana3_2394 0.67 +0.3 2,873,810 + Shewana3_2394 0.69 +0.7
Or see this region's nucleotide sequence