Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2290 and Shewana3_2291 are separated by 127 nucleotides Shewana3_2291 and Shewana3_2292 are separated by 596 nucleotides Shewana3_2292 and Shewana3_2293 are separated by 81 nucleotides
Shewana3_2290: Shewana3_2290 - hypothetical protein (RefSeq), at 2,754,407 to 2,755,432
_2290
Shewana3_2291: Shewana3_2291 - acylphosphatase (RefSeq), at 2,755,560 to 2,755,832
_2291
Shewana3_2292: Shewana3_2292 - hypothetical protein (RefSeq), at 2,756,429 to 2,756,968
_2292
Shewana3_2293: Shewana3_2293 - beta-hexosaminidase (RefSeq), at 2,757,050 to 2,758,078
_2293
Position (kb)
2756
2757 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2755.613 kb on + strand, within Shewana3_2291 at 2755.641 kb on - strand, within Shewana3_2291 at 2756.335 kb on + strand at 2756.581 kb on - strand, within Shewana3_2292 at 2756.713 kb on - strand, within Shewana3_2292 at 2756.748 kb on + strand, within Shewana3_2292 at 2756.756 kb on - strand, within Shewana3_2292 at 2756.841 kb on + strand, within Shewana3_2292 at 2756.862 kb on + strand, within Shewana3_2292 at 2757.007 kb on + strand at 2757.364 kb on - strand, within Shewana3_2293 at 2757.428 kb on - strand, within Shewana3_2293 at 2757.577 kb on - strand, within Shewana3_2293 at 2757.625 kb on + strand, within Shewana3_2293 at 2757.702 kb on - strand, within Shewana3_2293 at 2757.728 kb on + strand, within Shewana3_2293 at 2757.890 kb on + strand, within Shewana3_2293
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 2,755,613 + Shewana3_2291 0.19 +1.6 2,755,641 - Shewana3_2291 0.30 +0.3 2,756,335 + +0.6 2,756,581 - Shewana3_2292 0.28 -1.4 2,756,713 - Shewana3_2292 0.53 -1.0 2,756,748 + Shewana3_2292 0.59 -1.2 2,756,756 - Shewana3_2292 0.61 -0.7 2,756,841 + Shewana3_2292 0.76 +0.6 2,756,862 + Shewana3_2292 0.80 -0.7 2,757,007 + +1.6 2,757,364 - Shewana3_2293 0.31 -0.7 2,757,428 - Shewana3_2293 0.37 +0.5 2,757,577 - Shewana3_2293 0.51 -0.4 2,757,625 + Shewana3_2293 0.56 +1.6 2,757,702 - Shewana3_2293 0.63 +1.6 2,757,728 + Shewana3_2293 0.66 +3.6 2,757,890 + Shewana3_2293 0.82 +1.6
Or see this region's nucleotide sequence