Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2251

Experiment: Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2250 and Shewana3_2251 are separated by 119 nucleotidesShewana3_2251 and Shewana3_2252 are separated by 104 nucleotides Shewana3_2250: Shewana3_2250 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 2,711,588 to 2,712,895 _2250 Shewana3_2251: Shewana3_2251 - DNA polymerase III, epsilon subunit (RefSeq), at 2,713,015 to 2,713,704 _2251 Shewana3_2252: Shewana3_2252 - LacI family transcription regulator (RefSeq), at 2,713,809 to 2,714,849 _2252 Position (kb) 2713 2714Strain fitness (log2 ratio) -1 0 1 2at 2712.294 kb on - strand, within Shewana3_2250at 2712.682 kb on - strand, within Shewana3_2250at 2712.762 kb on + strand, within Shewana3_2250at 2713.259 kb on + strand, within Shewana3_2251at 2713.301 kb on + strand, within Shewana3_2251at 2713.568 kb on + strand, within Shewana3_2251at 2713.709 kb on + strandat 2714.166 kb on - strand, within Shewana3_2252at 2714.454 kb on + strand, within Shewana3_2252at 2714.651 kb on - strand, within Shewana3_2252

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2.5 mM
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2,712,294 - Shewana3_2250 0.54 +0.6
2,712,682 - Shewana3_2250 0.84 -1.4
2,712,762 + Shewana3_2250 0.90 +0.0
2,713,259 + Shewana3_2251 0.35 +0.0
2,713,301 + Shewana3_2251 0.41 -1.2
2,713,568 + Shewana3_2251 0.80 -0.7
2,713,709 + -1.3
2,714,166 - Shewana3_2252 0.34 +2.0
2,714,454 + Shewana3_2252 0.62 +0.6
2,714,651 - Shewana3_2252 0.81 -0.8

Or see this region's nucleotide sequence