Experiment: Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2216 and Shewana3_2217 are separated by 5 nucleotides Shewana3_2217 and Shewana3_2218 are separated by 14 nucleotides
Shewana3_2216: Shewana3_2216 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,662,258 to 2,664,231
_2216
Shewana3_2217: Shewana3_2217 - CheW protein (RefSeq), at 2,664,237 to 2,664,749
_2217
Shewana3_2218: Shewana3_2218 - CheA signal transduction histidine kinases (RefSeq), at 2,664,764 to 2,666,878
_2218
Position (kb)
2664
2665 Strain fitness (log2 ratio)
-1
0
1 at 2663.237 kb on + strand, within Shewana3_2216 at 2663.490 kb on - strand, within Shewana3_2216 at 2663.779 kb on - strand, within Shewana3_2216 at 2663.951 kb on - strand, within Shewana3_2216 at 2664.059 kb on - strand at 2664.134 kb on - strand at 2664.141 kb on - strand at 2664.288 kb on + strand at 2664.518 kb on - strand, within Shewana3_2217 at 2664.548 kb on + strand, within Shewana3_2217 at 2664.669 kb on + strand, within Shewana3_2217 at 2664.709 kb on + strand at 2664.717 kb on - strand at 2664.889 kb on - strand at 2665.320 kb on + strand, within Shewana3_2218 at 2665.379 kb on - strand, within Shewana3_2218 at 2665.441 kb on - strand, within Shewana3_2218 at 2665.464 kb on - strand, within Shewana3_2218 at 2665.560 kb on - strand, within Shewana3_2218
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2.5 mM remove 2,663,237 + Shewana3_2216 0.50 +0.0 2,663,490 - Shewana3_2216 0.62 +0.6 2,663,779 - Shewana3_2216 0.77 -0.6 2,663,951 - Shewana3_2216 0.86 +1.0 2,664,059 - +0.3 2,664,134 - +0.0 2,664,141 - +0.2 2,664,288 + -0.9 2,664,518 - Shewana3_2217 0.55 -1.7 2,664,548 + Shewana3_2217 0.61 +1.3 2,664,669 + Shewana3_2217 0.84 +0.9 2,664,709 + +0.0 2,664,717 - +0.6 2,664,889 - +0.6 2,665,320 + Shewana3_2218 0.26 +1.6 2,665,379 - Shewana3_2218 0.29 +0.9 2,665,441 - Shewana3_2218 0.32 +0.6 2,665,464 - Shewana3_2218 0.33 +0.2 2,665,560 - Shewana3_2218 0.38 +0.6
Or see this region's nucleotide sequence